RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.69□□□□□ -1.5
HOXA1-201ENST00000343060 PLA2G1BP04054 148 aaKnown RBP5.69□□□□□ -1.5
HOXA1-201ENST00000343060 DNAH8Q96JB1 4490 aa5.67□□□□□ -1.5
HOXA1-201ENST00000343060 IGLV5-52A0A0A0MRZ9 124 aa5.67□□□□□ -1.5
HOXA1-201ENST00000343060 C8orf87E5RJ46 101 aa5.67□□□□□ -1.5
HOXA1-201ENST00000343060 SPATA8Q6RVD6 105 aa5.67□□□□□ -1.5
HOXA1-201ENST00000343060 NOTCH1P46531 2555 aa5.66□□□□□ -1.5
HOXA1-201ENST00000343060 NBDYA0A0U1RRE5 68 aa5.65□□□□□ -1.5
HOXA1-201ENST00000343060 RTL8CO15255 209 aa5.65□□□□□ -1.51
HOXA1-201ENST00000343060 ZNF861PO60384 105 aa5.65□□□□□ -1.51
HOXA1-201ENST00000343060 PRAC1Q96KF2 57 aa5.65□□□□□ -1.51
HOXA1-201ENST00000343060 PSORS1C2Q9UIG4 136 aa5.65□□□□□ -1.51
HOXA1-201ENST00000343060 NBEAL1Q6ZS30 2694 aa5.64□□□□□ -1.51
HOXA1-201ENST00000343060 CSMD3Q7Z407 3707 aa5.64□□□□□ -1.51
HOXA1-201ENST00000343060 FBN1P35555 2871 aaKnown RBP5.64□□□□□ -1.51
HOXA1-201ENST00000343060 STAB1Q9NY15 2570 aa5.64□□□□□ -1.51
HOXA1-201ENST00000343060 ANAPC11Q9NYG5 84 aa5.63□□□□□ -1.51
HOXA1-201ENST00000343060 A0A1B0GU69 56 aa5.63□□□□□ -1.51
HOXA1-201ENST00000343060 FAM229AH3BQW9 127 aa5.62□□□□□ -1.51
HOXA1-201ENST00000343060 IGKV2-30P06310 120 aa5.61□□□□□ -1.51
HOXA1-201ENST00000343060 SPINK6Q6UWN8 80 aa5.6□□□□□ -1.51
HOXA1-201ENST00000343060 ADM2Q7Z4H4 148 aa5.6□□□□□ -1.51
HOXA1-201ENST00000343060 FRAS1Q86XX4 4008 aa5.6□□□□□ -1.51
HOXA1-201ENST00000343060 DNAH7Q8WXX0 4024 aa5.6□□□□□ -1.51
HOXA1-201ENST00000343060 PLECQ15149 4684 aaKnown RBP5.59□□□□□ -1.51
HOXA1-201ENST00000343060 COL6A5A8TX70 2615 aa5.59□□□□□ -1.51
HOXA1-201ENST00000343060 STAB2Q8WWQ8 2551 aa5.59□□□□□ -1.51
HOXA1-201ENST00000343060 COL7A1Q02388 2944 aa5.59□□□□□ -1.52
HOXA1-201ENST00000343060 LINC01554Q52M75 96 aa5.58□□□□□ -1.52
HOXA1-201ENST00000343060 DNAH17Q9UFH2 4485 aa5.58□□□□□ -1.52
HOXA1-201ENST00000343060 HECTD4Q9Y4D8 3996 aa5.58□□□□□ -1.52
HOXA1-201ENST00000343060 MIR22HGQ0VDD5 57 aa5.58□□□□□ -1.52
HOXA1-201ENST00000343060 A0A087WTM6 91 aa5.57□□□□□ -1.52
HOXA1-201ENST00000343060 UQCR11O14957 56 aa5.57□□□□□ -1.52
HOXA1-201ENST00000343060 VPS13DQ5THJ4 4388 aa5.57□□□□□ -1.52
HOXA1-201ENST00000343060 SSBP3-AS1Q7Z2R9 100 aa5.56□□□□□ -1.52
HOXA1-201ENST00000343060 CIRBP-AS1Q8TBR5 109 aa5.54□□□□□ -1.52
HOXA1-201ENST00000343060 KRTAP16-1A8MUX0 517 aa5.54□□□□□ -1.52
HOXA1-201ENST00000343060 IGLV7-43P04211 117 aa5.54□□□□□ -1.52
HOXA1-201ENST00000343060 NUPR2A6NF83 97 aa5.52□□□□□ -1.53
HOXA1-201ENST00000343060 IGKV2D-30A0A075B6S6 120 aa5.49□□□□□ -1.53
HOXA1-201ENST00000343060 C4orf48Q5BLP8 95 aa5.49□□□□□ -1.53
HOXA1-201ENST00000343060 RETNLBQ9BQ08 111 aa5.49□□□□□ -1.53
HOXA1-201ENST00000343060 PRKDCP78527 4128 aaKnown RBP5.47□□□□□ -1.53
HOXA1-201ENST00000343060 CSAG1Q6PB30 78 aa5.46□□□□□ -1.54
HOXA1-201ENST00000343060 STARD9Q9P2P6 4700 aa5.45□□□□□ -1.54
HOXA1-201ENST00000343060 DNAH2Q9P225 4427 aa5.45□□□□□ -1.54
HOXA1-201ENST00000343060 KRTAP13-2Q52LG2 175 aa5.44□□□□□ -1.54
HOXA1-201ENST00000343060 DNAH11Q96DT5 4516 aa5.43□□□□□ -1.54
HOXA1-201ENST00000343060 MGAM2Q2M2H8 2515 aa5.43□□□□□ -1.54
HOXA1-201ENST00000343060 LY6G6CO95867 125 aa5.4□□□□□ -1.55
HOXA1-201ENST00000343060 KMT2AQ03164 3969 aa5.38□□□□□ -1.55
HOXA1-201ENST00000343060 A8MUU9 505 aa5.37□□□□□ -1.55
HOXA1-201ENST00000343060 FBN3Q75N90 2809 aa5.37□□□□□ -1.55
HOXA1-201ENST00000343060 DNAH5Q8TE73 4624 aa5.36□□□□□ -1.55
HOXA1-201ENST00000343060 H0YAA0 97 aa5.36□□□□□ -1.55
HOXA1-201ENST00000343060 H3BS24 57 aa5.36□□□□□ -1.55
HOXA1-201ENST00000343060 KRTAP21-3Q3LHN1 58 aa5.36□□□□□ -1.55
HOXA1-201ENST00000343060 DNAH6Q9C0G6 4158 aa5.35□□□□□ -1.55
HOXA1-201ENST00000343060 KRTAP1-4P0C5Y4 121 aa5.35□□□□□ -1.55
HOXA1-201ENST00000343060 Q6ZSA8 131 aa5.35□□□□□ -1.55
HOXA1-201ENST00000343060 C1orf134Q5TEV5 83 aa5.34□□□□□ -1.55
HOXA1-201ENST00000343060 MEGF8Q7Z7M0 2845 aa5.33□□□□□ -1.56
HOXA1-201ENST00000343060 SPINK1P00995 79 aa5.33□□□□□ -1.56
HOXA1-201ENST00000343060 Q8N1X5 172 aa5.33□□□□□ -1.56
HOXA1-201ENST00000343060 KRTAP25-1Q3LHN0 102 aa5.32□□□□□ -1.56
HOXA1-201ENST00000343060 TGP01266 2768 aa5.32□□□□□ -1.56
HOXA1-201ENST00000343060 LINC00304Q8N9R0 145 aa5.3□□□□□ -1.56
HOXA1-201ENST00000343060 TYMSOSQ8TAI1 123 aa5.29□□□□□ -1.56
HOXA1-201ENST00000343060 LRP1BQ9NZR2 4599 aa5.28□□□□□ -1.56
HOXA1-201ENST00000343060 KRTAP10-2P60368 255 aa5.28□□□□□ -1.56
HOXA1-201ENST00000343060 A0A1B0GU33 70 aa5.26□□□□□ -1.57
HOXA1-201ENST00000343060 H1FX-AS1Q4G0G2 97 aa5.26□□□□□ -1.57
HOXA1-201ENST00000343060 RPS29P62273 56 aaKnown RBP5.25□□□□□ -1.57
HOXA1-201ENST00000343060 DNHD1Q96M86 4753 aa5.25□□□□□ -1.57
HOXA1-201ENST00000343060 ROMO1P60602 79 aa5.24□□□□□ -1.57
HOXA1-201ENST00000343060 KRTAP3-1Q9BYR8 98 aa5.24□□□□□ -1.57
HOXA1-201ENST00000343060 SACSQ9NZJ4 4579 aa5.23□□□□□ -1.57
HOXA1-201ENST00000343060 KRTAP10-1P60331 282 aa5.23□□□□□ -1.57
HOXA1-201ENST00000343060 VPS13BQ7Z7G8 4022 aa5.22□□□□□ -1.57
HOXA1-201ENST00000343060 C20orf166-AS1Q96NR2 134 aa5.21□□□□□ -1.58
HOXA1-201ENST00000343060 PKD1P98161 4303 aa5.2□□□□□ -1.58
HOXA1-201ENST00000343060 FAT2Q9NYQ8 4349 aa5.17□□□□□ -1.58
HOXA1-201ENST00000343060 K7ERS5 55 aa5.15□□□□□ -1.59
HOXA1-201ENST00000343060 COX6B2Q6YFQ2 88 aa5.15□□□□□ -1.59
HOXA1-201ENST00000343060 PKHD1L1Q86WI1 4243 aa5.14□□□□□ -1.59
HOXA1-201ENST00000343060 LCE2DQ5TA82 110 aaPredicted RBP5.12□□□□□ -1.59
HOXA1-201ENST00000343060 C9orf92A6NGG3 77 aa5.09□□□□□ -1.59
HOXA1-201ENST00000343060 P0C880 135 aa5.09□□□□□ -1.59
HOXA1-201ENST00000343060 CRIPTQ9P021 101 aa5.06□□□□□ -1.6
HOXA1-201ENST00000343060 FLG2Q5D862 2391 aaPredicted RBP5.05□□□□□ -1.6
HOXA1-201ENST00000343060 KRTAP10-6P60371 365 aaPredicted RBP5.05□□□□□ -1.6
HOXA1-201ENST00000343060 RPL37P61927 97 aaKnown RBP5.05□□□□□ -1.6
HOXA1-201ENST00000343060 PKHD1P08F94 4074 aa5.03□□□□□ -1.6
HOXA1-201ENST00000343060 HYDINQ4G0P3 5121 aa5.02□□□□□ -1.61
HOXA1-201ENST00000343060 APOBP04114 4563 aaKnown RBP5.02□□□□□ -1.61
HOXA1-201ENST00000343060 KRTAP13-4Q3LI77 160 aa5.01□□□□□ -1.61
HOXA1-201ENST00000343060 KRTAP3-3Q9BYR6 98 aa5.01□□□□□ -1.61
HOXA1-201ENST00000343060 TPRXLQ17RH7 258 aa5□□□□□ -1.61
HOXA1-201ENST00000343060 KRTAP3-2Q9BYR7 98 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms