RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 DMXL2Q8TDJ6 3036 aa3.56□□□□□ -1.84
CSMD1-201ENST00000335551 TNP1P09430 55 aa3.55□□□□□ -1.84
CSMD1-201ENST00000335551 P0C880 135 aa3.55□□□□□ -1.84
CSMD1-201ENST00000335551 VWFP04275 2813 aa3.55□□□□□ -1.84
CSMD1-201ENST00000335551 WDFY4Q6ZS81 3184 aa3.55□□□□□ -1.84
CSMD1-201ENST00000335551 NOTCH2NLQ7Z3S9 236 aa3.52□□□□□ -1.85
CSMD1-201ENST00000335551 RANBP2P49792 3224 aaKnown RBP3.51□□□□□ -1.85
CSMD1-201ENST00000335551 UTRNP46939 3433 aa3.51□□□□□ -1.85
CSMD1-201ENST00000335551 KRTAP1-5Q9BYS1 174 aa3.5□□□□□ -1.85
CSMD1-201ENST00000335551 LAMA1P25391 3075 aa3.49□□□□□ -1.85
CSMD1-201ENST00000335551 PKD1L1Q8TDX9 2849 aa3.49□□□□□ -1.85
CSMD1-201ENST00000335551 FBN2P35556 2912 aa3.48□□□□□ -1.85
CSMD1-201ENST00000335551 KRTAP10-1P60331 282 aa3.47□□□□□ -1.85
CSMD1-201ENST00000335551 REV3LO60673 3130 aa3.47□□□□□ -1.85
CSMD1-201ENST00000335551 KRTAP21-3Q3LHN1 58 aa3.46□□□□□ -1.86
CSMD1-201ENST00000335551 PRO2289Q9P1D8 64 aa3.45□□□□□ -1.86
CSMD1-201ENST00000335551 MXRA5Q9NR99 2828 aa3.44□□□□□ -1.86
CSMD1-201ENST00000335551 TENM2Q9NT68 2774 aa3.44□□□□□ -1.86
CSMD1-201ENST00000335551 HTTP42858 3142 aa3.43□□□□□ -1.86
CSMD1-201ENST00000335551 KRTAP10-2P60368 255 aa3.42□□□□□ -1.86
CSMD1-201ENST00000335551 ATMQ13315 3056 aa3.41□□□□□ -1.86
CSMD1-201ENST00000335551 FREM2Q5SZK8 3169 aa3.4□□□□□ -1.86
CSMD1-201ENST00000335551 Q6ZRN7 208 aaPredicted RBP3.4□□□□□ -1.86
CSMD1-201ENST00000335551 H0YAA0 97 aa3.4□□□□□ -1.86
CSMD1-201ENST00000335551 CELSR1Q9NYQ6 3014 aa3.39□□□□□ -1.87
CSMD1-201ENST00000335551 BOD1L1Q8NFC6 3051 aa3.39□□□□□ -1.87
CSMD1-201ENST00000335551 COL7A1Q02388 2944 aa3.37□□□□□ -1.87
CSMD1-201ENST00000335551 KRTAP13-1Q8IUC0 172 aa3.37□□□□□ -1.87
CSMD1-201ENST00000335551 DMXL1Q9Y485 3027 aa3.37□□□□□ -1.87
CSMD1-201ENST00000335551 MKI67P46013 3256 aaKnown RBP3.36□□□□□ -1.87
CSMD1-201ENST00000335551 ADGRG4Q8IZF6 3080 aa3.36□□□□□ -1.87
CSMD1-201ENST00000335551 HRNRQ86YZ3 2850 aaPredicted RBP3.36□□□□□ -1.87
CSMD1-201ENST00000335551 KRTAP13-2Q52LG2 175 aa3.35□□□□□ -1.87
CSMD1-201ENST00000335551 LAMA3Q16787 3333 aa3.32□□□□□ -1.88
CSMD1-201ENST00000335551 XIRP2A4UGR9 3374 aa3.31□□□□□ -1.88
CSMD1-201ENST00000335551 KRTAP10-8P60410 259 aa3.3□□□□□ -1.88
CSMD1-201ENST00000335551 COL6A3P12111 3177 aa3.29□□□□□ -1.88
CSMD1-201ENST00000335551 KRTAP7-1Q8IUC3 87 aa3.29□□□□□ -1.88
CSMD1-201ENST00000335551 USP34Q70CQ2 3546 aa3.27□□□□□ -1.89
CSMD1-201ENST00000335551 CELSR3Q9NYQ7 3312 aa3.26□□□□□ -1.89
CSMD1-201ENST00000335551 MEGF8Q7Z7M0 2845 aa3.25□□□□□ -1.89
CSMD1-201ENST00000335551 BRCA2P51587 3418 aa3.23□□□□□ -1.89
CSMD1-201ENST00000335551 ZFHX3Q15911 3703 aa3.22□□□□□ -1.89
CSMD1-201ENST00000335551 XP32Q5T750 250 aa3.21□□□□□ -1.9
CSMD1-201ENST00000335551 FBN1P35555 2871 aaKnown RBP3.2□□□□□ -1.9
CSMD1-201ENST00000335551 KRTAP10-10P60014 251 aa3.2□□□□□ -1.9
CSMD1-201ENST00000335551 CFAP47Q6ZTR5 3102 aa3.2□□□□□ -1.9
CSMD1-201ENST00000335551 EYSQ5T1H1 3165 aa3.19□□□□□ -1.9
CSMD1-201ENST00000335551 INE1O15225 51 aa3.18□□□□□ -1.9
CSMD1-201ENST00000335551 KRTAP13-4Q3LI77 160 aa3.17□□□□□ -1.9
CSMD1-201ENST00000335551 FBN3Q75N90 2809 aa3.17□□□□□ -1.9
CSMD1-201ENST00000335551 TPRXLQ17RH7 258 aa3.16□□□□□ -1.9
CSMD1-201ENST00000335551 SPTBN5Q9NRC6 3674 aaKnown RBP3.15□□□□□ -1.9
CSMD1-201ENST00000335551 VCANP13611 3396 aa3.15□□□□□ -1.9
CSMD1-201ENST00000335551 AKAP9Q99996 3911 aa3.15□□□□□ -1.91
CSMD1-201ENST00000335551 NBPF19A0A087WUL8 3843 aa3.14□□□□□ -1.91
CSMD1-201ENST00000335551 KRTAP12-2P59991 146 aa3.14□□□□□ -1.91
CSMD1-201ENST00000335551 OTOGQ6ZRI0 2925 aa3.13□□□□□ -1.91
CSMD1-201ENST00000335551 UNC80Q8N2C7 3258 aa3.12□□□□□ -1.91
CSMD1-201ENST00000335551 KRTAP1-4P0C5Y4 121 aa3.12□□□□□ -1.91
CSMD1-201ENST00000335551 DNAH14Q0VDD8 3507 aa3.11□□□□□ -1.91
CSMD1-201ENST00000335551 SZT2Q5T011 3432 aa3.1□□□□□ -1.91
CSMD1-201ENST00000335551 SPEGQ15772 3267 aa3.09□□□□□ -1.91
CSMD1-201ENST00000335551 A0A1B0GVY2 172 aa3.08□□□□□ -1.92
CSMD1-201ENST00000335551 KRTAP13-3Q3SY46 172 aa3.08□□□□□ -1.92
CSMD1-201ENST00000335551 TRRAPQ9Y4A5 3859 aa3.07□□□□□ -1.92
CSMD1-201ENST00000335551 CDH23Q9H251 3354 aa3.06□□□□□ -1.92
CSMD1-201ENST00000335551 KRTAP12-1P59990 96 aa3.06□□□□□ -1.92
CSMD1-201ENST00000335551 KRTAP15-1Q3LI76 137 aa3.05□□□□□ -1.92
CSMD1-201ENST00000335551 DNAH1Q9P2D7 4330 aa3.04□□□□□ -1.92
CSMD1-201ENST00000335551 ALMS1Q8TCU4 4167 aa3.03□□□□□ -1.93
CSMD1-201ENST00000335551 MYO15AQ9UKN7 3530 aa3.02□□□□□ -1.93
CSMD1-201ENST00000335551 DMDP11532 3685 aa2.97□□□□□ -1.93
CSMD1-201ENST00000335551 LOC400499M0QZD8 3231 aa2.96□□□□□ -1.94
CSMD1-201ENST00000335551 DCHS1Q96JQ0 3298 aa2.94□□□□□ -1.94
CSMD1-201ENST00000335551 VPS13CQ709C8 3753 aa2.92□□□□□ -1.94
CSMD1-201ENST00000335551 SPENQ96T58 3664 aaKnown RBP2.92□□□□□ -1.94
CSMD1-201ENST00000335551 DNAH7Q8WXX0 4024 aa2.9□□□□□ -1.94
CSMD1-201ENST00000335551 ZFHX4Q86UP3 3567 aa2.9□□□□□ -1.94
CSMD1-201ENST00000335551 HUWE1Q7Z6Z7 4374 aaKnown RBP2.9□□□□□ -1.95
CSMD1-201ENST00000335551 ANK3Q12955 4377 aaKnown RBP2.89□□□□□ -1.95
CSMD1-201ENST00000335551 CMYA5Q8N3K9 4069 aa2.89□□□□□ -1.95
CSMD1-201ENST00000335551 KRTAP10-6P60371 365 aaPredicted RBP2.87□□□□□ -1.95
CSMD1-201ENST00000335551 LAMA5O15230 3695 aa2.87□□□□□ -1.95
CSMD1-201ENST00000335551 KRTAP23-1A1A580 65 aa2.87□□□□□ -1.95
CSMD1-201ENST00000335551 SMG1Q96Q15 3661 aaKnown RBP2.86□□□□□ -1.95
CSMD1-201ENST00000335551 WDFY3Q8IZQ1 3526 aa2.86□□□□□ -1.95
CSMD1-201ENST00000335551 DNAH3Q8TD57 4116 aa2.85□□□□□ -1.95
CSMD1-201ENST00000335551 KRTAP3-1Q9BYR8 98 aa2.85□□□□□ -1.95
CSMD1-201ENST00000335551 KRTAP10-12P60413 245 aa2.84□□□□□ -1.96
CSMD1-201ENST00000335551 BSNQ9UPA5 3926 aa2.84□□□□□ -1.96
CSMD1-201ENST00000335551 DNAH6Q9C0G6 4158 aa2.83□□□□□ -1.96
CSMD1-201ENST00000335551 ANK2Q01484 3957 aa2.82□□□□□ -1.96
CSMD1-201ENST00000335551 LYSTQ99698 3801 aa2.82□□□□□ -1.96
CSMD1-201ENST00000335551 HECTD4Q9Y4D8 3996 aa2.81□□□□□ -1.96
CSMD1-201ENST00000335551 ZNF469Q96JG9 3925 aaPredicted RBP2.79□□□□□ -1.96
CSMD1-201ENST00000335551 DNAH2Q9P225 4427 aa2.78□□□□□ -1.96
CSMD1-201ENST00000335551 KRTAP12-3P60328 96 aa2.76□□□□□ -1.97
CSMD1-201ENST00000335551 ASPMQ8IZT6 3477 aa2.75□□□□□ -1.97
CSMD1-201ENST00000335551 FRAS1Q86XX4 4008 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms