RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 Q6ZSA8 131 aa8.58□□□□□ -1.04
TPM3-206ENST00000330188 PKD1P98161 4303 aa8.57□□□□□ -1.04
TPM3-206ENST00000330188 KRTAP10-1P60331 282 aa8.57□□□□□ -1.04
TPM3-206ENST00000330188 TP53AIP1Q9HCN2 124 aa8.56□□□□□ -1.04
TPM3-206ENST00000330188 FAT2Q9NYQ8 4349 aa8.55□□□□□ -1.04
TPM3-206ENST00000330188 A0A087X002 238 aa8.55□□□□□ -1.04
TPM3-206ENST00000330188 CD164Q04900 197 aa8.55□□□□□ -1.04
TPM3-206ENST00000330188 SSBP3-AS1Q7Z2R9 100 aa8.55□□□□□ -1.04
TPM3-206ENST00000330188 NOTCH2NLQ7Z3S9 236 aa8.55□□□□□ -1.04
TPM3-206ENST00000330188 SPANXA2-OT1Q8N9U9 137 aa8.55□□□□□ -1.04
TPM3-206ENST00000330188 MPLKIPQ8TAP9 179 aa8.54□□□□□ -1.04
TPM3-206ENST00000330188 MRPL34Q9BQ48 92 aaKnown RBP8.53□□□□□ -1.04
TPM3-206ENST00000330188 SPINK6Q6UWN8 80 aa8.52□□□□□ -1.05
TPM3-206ENST00000330188 LRP1BQ9NZR2 4599 aa8.51□□□□□ -1.05
TPM3-206ENST00000330188 NDUFS5O43920 106 aa8.51□□□□□ -1.05
TPM3-206ENST00000330188 KRTAP13-2Q52LG2 175 aa8.49□□□□□ -1.05
TPM3-206ENST00000330188 LINC00336Q6ZUF6 198 aa8.47□□□□□ -1.05
TPM3-206ENST00000330188 IGLV7-46A0A075B6I9 117 aa8.44□□□□□ -1.06
TPM3-206ENST00000330188 Q1T7F1 81 aa8.44□□□□□ -1.06
TPM3-206ENST00000330188 PCOTHQ58A44 107 aa8.44□□□□□ -1.06
TPM3-206ENST00000330188 KRTAP1-4P0C5Y4 121 aa8.42□□□□□ -1.06
TPM3-206ENST00000330188 C8orf87E5RJ46 101 aa8.41□□□□□ -1.06
TPM3-206ENST00000330188 VPS13BQ7Z7G8 4022 aa8.39□□□□□ -1.07
TPM3-206ENST00000330188 KRTAP13-3Q3SY46 172 aa8.39□□□□□ -1.07
TPM3-206ENST00000330188 C1orf195Q5TG92 126 aa8.39□□□□□ -1.07
TPM3-206ENST00000330188 Q5W150 140 aa8.39□□□□□ -1.07
TPM3-206ENST00000330188 SACSQ9NZJ4 4579 aa8.36□□□□□ -1.07
TPM3-206ENST00000330188 COA5Q86WW8 74 aa8.35□□□□□ -1.07
TPM3-206ENST00000330188 PRO0628Q9UI54 55 aa8.35□□□□□ -1.07
TPM3-206ENST00000330188 LOC101927531A0A1B0GV80 90 aa8.35□□□□□ -1.07
TPM3-206ENST00000330188 LINC00313P59037 77 aa8.35□□□□□ -1.07
TPM3-206ENST00000330188 Q8N9P0 234 aaPredicted RBP8.33□□□□□ -1.08
TPM3-206ENST00000330188 LIMD2Q9BT23 127 aa8.32□□□□□ -1.08
TPM3-206ENST00000330188 V9GYY9 64 aa8.32□□□□□ -1.08
TPM3-206ENST00000330188 BRK1Q8WUW1 75 aa8.32□□□□□ -1.08
TPM3-206ENST00000330188 PSPHP1O15172 72 aa8.31□□□□□ -1.08
TPM3-206ENST00000330188 PLA2G1BP04054 148 aaKnown RBP8.31□□□□□ -1.08
TPM3-206ENST00000330188 TYMSOSQ8TAI1 123 aa8.29□□□□□ -1.08
TPM3-206ENST00000330188 PKHD1P08F94 4074 aa8.28□□□□□ -1.08
TPM3-206ENST00000330188 KRTAP16-1A8MUX0 517 aa8.28□□□□□ -1.08
TPM3-206ENST00000330188 A8MUN3 132 aa8.27□□□□□ -1.09
TPM3-206ENST00000330188 FAM229AH3BQW9 127 aa8.26□□□□□ -1.09
TPM3-206ENST00000330188 DYNC1H1Q14204 4646 aaKnown RBP8.25□□□□□ -1.09
TPM3-206ENST00000330188 HRES1P13985 223 aa8.25□□□□□ -1.09
TPM3-206ENST00000330188 SPINK1P00995 79 aa8.24□□□□□ -1.09
TPM3-206ENST00000330188 Q5VV11 94 aa8.23□□□□□ -1.09
TPM3-206ENST00000330188 RETNLBQ9BQ08 111 aa8.23□□□□□ -1.09
TPM3-206ENST00000330188 A0A1B0GVY2 172 aa8.2□□□□□ -1.1
TPM3-206ENST00000330188 PRR26Q8N8Z3 221 aa8.2□□□□□ -1.1
TPM3-206ENST00000330188 IGKV2-30P06310 120 aa8.2□□□□□ -1.1
TPM3-206ENST00000330188 SMR3BP02814 79 aaPredicted RBP8.19□□□□□ -1.1
TPM3-206ENST00000330188 PRR15LQ9BU68 103 aa8.18□□□□□ -1.1
TPM3-206ENST00000330188 LINC00304Q8N9R0 145 aa8.17□□□□□ -1.1
TPM3-206ENST00000330188 RPS29P62273 56 aaKnown RBP8.16□□□□□ -1.1
TPM3-206ENST00000330188 APOBP04114 4563 aaKnown RBP8.15□□□□□ -1.1
TPM3-206ENST00000330188 SPAG11AQ6PDA7 123 aa8.15□□□□□ -1.11
TPM3-206ENST00000330188 LINC01558Q9Y6Z2 57 aa8.15□□□□□ -1.11
TPM3-206ENST00000330188 ACYP2P14621 99 aa8.14□□□□□ -1.11
TPM3-206ENST00000330188 DMAC1Q96GE9 116 aa8.14□□□□□ -1.11
TPM3-206ENST00000330188 KRTAP10-4P60372 401 aaPredicted RBP8.13□□□□□ -1.11
TPM3-206ENST00000330188 CHKB-CPT1BH3BT56 60 aa8.12□□□□□ -1.11
TPM3-206ENST00000330188 Q75L30 129 aa8.12□□□□□ -1.11
TPM3-206ENST00000330188 FAT1Q14517 4588 aa8.11□□□□□ -1.11
TPM3-206ENST00000330188 LCE2BO14633 110 aa8.1□□□□□ -1.11
TPM3-206ENST00000330188 RYR2Q92736 4967 aa8.09□□□□□ -1.11
TPM3-206ENST00000330188 PKHD1L1Q86WI1 4243 aa8.08□□□□□ -1.12
TPM3-206ENST00000330188 IGKV2D-30A0A075B6S6 120 aa8.08□□□□□ -1.12
TPM3-206ENST00000330188 A8MU10 97 aa8.06□□□□□ -1.12
TPM3-206ENST00000330188 A6NED7 52 aa8.02□□□□□ -1.13
TPM3-206ENST00000330188 LCA10Q71F78 164 aa7.99□□□□□ -1.13
TPM3-206ENST00000330188 KMT2CQ8NEZ4 4911 aaKnown RBP7.98□□□□□ -1.13
TPM3-206ENST00000330188 C7orf65Q6ZTY9 151 aa7.97□□□□□ -1.13
TPM3-206ENST00000330188 C9orf92A6NGG3 77 aa7.97□□□□□ -1.13
TPM3-206ENST00000330188 SPINK7P58062 85 aa7.95□□□□□ -1.14
TPM3-206ENST00000330188 C20orf166-AS1Q96NR2 134 aa7.95□□□□□ -1.14
TPM3-206ENST00000330188 A8MUU9 505 aa7.94□□□□□ -1.14
TPM3-206ENST00000330188 CDC42SE1Q9NRR8 79 aa7.94□□□□□ -1.14
TPM3-206ENST00000330188 LCE2CQ5TA81 110 aa7.88□□□□□ -1.15
TPM3-206ENST00000330188 ATP11AUNQ6ZP68 121 aa7.88□□□□□ -1.15
TPM3-206ENST00000330188 Q8N1X5 172 aa7.87□□□□□ -1.15
TPM3-206ENST00000330188 SPTSSBQ8NFR3 76 aa7.87□□□□□ -1.15
TPM3-206ENST00000330188 A0A1B0GU69 56 aa7.86□□□□□ -1.15
TPM3-206ENST00000330188 PMAIP1Q13794 54 aa7.85□□□□□ -1.15
TPM3-206ENST00000330188 FLG2Q5D862 2391 aaPredicted RBP7.84□□□□□ -1.15
TPM3-206ENST00000330188 FAT3Q8TDW7 4589 aa7.83□□□□□ -1.16
TPM3-206ENST00000330188 TNXBP22105 4242 aa7.82□□□□□ -1.16
TPM3-206ENST00000330188 HSPG2P98160 4391 aa7.81□□□□□ -1.16
TPM3-206ENST00000330188 H3BS24 57 aa7.81□□□□□ -1.16
TPM3-206ENST00000330188 LRP1Q07954 4544 aaKnown RBP7.81□□□□□ -1.16
TPM3-206ENST00000330188 KRTAP10-8P60410 259 aa7.8□□□□□ -1.16
TPM3-206ENST00000330188 Q5VSD8 79 aa7.8□□□□□ -1.16
TPM3-206ENST00000330188 RYR3Q15413 4870 aa7.76□□□□□ -1.17
TPM3-206ENST00000330188 A6NN06 94 aa7.76□□□□□ -1.17
TPM3-206ENST00000330188 KRTAP3-1Q9BYR8 98 aa7.76□□□□□ -1.17
TPM3-206ENST00000330188 RYR1P21817 5038 aa7.74□□□□□ -1.17
TPM3-206ENST00000330188 LCE2AQ5TA79 106 aaPredicted RBP7.73□□□□□ -1.17
TPM3-206ENST00000330188 SPATA8Q6RVD6 105 aa7.71□□□□□ -1.18
TPM3-206ENST00000330188 UQCR11O14957 56 aa7.7□□□□□ -1.18
TPM3-206ENST00000330188 KRTAP17-1Q9BYP8 105 aa7.7□□□□□ -1.18
TPM3-206ENST00000330188 MIR22HGQ0VDD5 57 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms