RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 DNAH6Q9C0G6 4158 aa11.82□□□□□ -0.52
CRLF3-201ENST00000324238 IGLV7-46A0A075B6I9 117 aa11.81□□□□□ -0.52
CRLF3-201ENST00000324238 IGLV5-52A0A0A0MRZ9 124 aa11.8□□□□□ -0.52
CRLF3-201ENST00000324238 CIRBP-AS1Q8TBR5 109 aa11.79□□□□□ -0.52
CRLF3-201ENST00000324238 SPTSSBQ8NFR3 76 aa11.78□□□□□ -0.52
CRLF3-201ENST00000324238 V9GYY9 64 aa11.78□□□□□ -0.52
CRLF3-201ENST00000324238 LINC00483Q53H64 154 aa11.77□□□□□ -0.52
CRLF3-201ENST00000324238 ASB16-AS1Q495Z4 193 aa11.76□□□□□ -0.53
CRLF3-201ENST00000324238 ZNF861PO60384 105 aa11.75□□□□□ -0.53
CRLF3-201ENST00000324238 RETNLBQ9BQ08 111 aa11.75□□□□□ -0.53
CRLF3-201ENST00000324238 MRPL34Q9BQ48 92 aaKnown RBP11.75□□□□□ -0.53
CRLF3-201ENST00000324238 Q5W150 140 aa11.75□□□□□ -0.53
CRLF3-201ENST00000324238 LIMD2Q9BT23 127 aa11.73□□□□□ -0.53
CRLF3-201ENST00000324238 A6NED7 52 aa11.73□□□□□ -0.53
CRLF3-201ENST00000324238 TP53AIP1Q9HCN2 124 aa11.73□□□□□ -0.53
CRLF3-201ENST00000324238 DNAH11Q96DT5 4516 aa11.72□□□□□ -0.53
CRLF3-201ENST00000324238 PMAIP1Q13794 54 aa11.72□□□□□ -0.53
CRLF3-201ENST00000324238 C1orf134Q5TEV5 83 aa11.71□□□□□ -0.54
CRLF3-201ENST00000324238 Q6ZR54 194 aa11.7□□□□□ -0.54
CRLF3-201ENST00000324238 HRES1P13985 223 aa11.7□□□□□ -0.54
CRLF3-201ENST00000324238 LCA10Q71F78 164 aa11.7□□□□□ -0.54
CRLF3-201ENST00000324238 ZNF706Q9Y5V0 76 aaPredicted RBP11.7□□□□□ -0.54
CRLF3-201ENST00000324238 PRR26Q8N8Z3 221 aa11.67□□□□□ -0.54
CRLF3-201ENST00000324238 PLAC8Q9NZF1 115 aa11.66□□□□□ -0.54
CRLF3-201ENST00000324238 KRTAP10-2P60368 255 aa11.65□□□□□ -0.54
CRLF3-201ENST00000324238 IGLV7-43P04211 117 aa11.61□□□□□ -0.55
CRLF3-201ENST00000324238 HYDINQ4G0P3 5121 aa11.59□□□□□ -0.55
CRLF3-201ENST00000324238 ALMS1Q8TCU4 4167 aa11.59□□□□□ -0.55
CRLF3-201ENST00000324238 Q75L30 129 aa11.58□□□□□ -0.55
CRLF3-201ENST00000324238 SPINK7P58062 85 aa11.58□□□□□ -0.56
CRLF3-201ENST00000324238 LOC101927531A0A1B0GV80 90 aa11.57□□□□□ -0.56
CRLF3-201ENST00000324238 LRP1BQ9NZR2 4599 aa11.56□□□□□ -0.56
CRLF3-201ENST00000324238 DNAH5Q8TE73 4624 aa11.55□□□□□ -0.56
CRLF3-201ENST00000324238 SEC61GP60059 68 aa11.54□□□□□ -0.56
CRLF3-201ENST00000324238 LINC01558Q9Y6Z2 57 aa11.52□□□□□ -0.57
CRLF3-201ENST00000324238 KRTAP13-3Q3SY46 172 aa11.49□□□□□ -0.57
CRLF3-201ENST00000324238 KRTAP10-1P60331 282 aa11.45□□□□□ -0.58
CRLF3-201ENST00000324238 LINC00313P59037 77 aa11.44□□□□□ -0.58
CRLF3-201ENST00000324238 KRTAP13-2Q52LG2 175 aa11.43□□□□□ -0.58
CRLF3-201ENST00000324238 CDC42SE1Q9NRR8 79 aa11.42□□□□□ -0.58
CRLF3-201ENST00000324238 ATP11AUNQ6ZP68 121 aa11.41□□□□□ -0.58
CRLF3-201ENST00000324238 VPS13BQ7Z7G8 4022 aa11.37□□□□□ -0.59
CRLF3-201ENST00000324238 SSBP3-AS1Q7Z2R9 100 aa11.37□□□□□ -0.59
CRLF3-201ENST00000324238 FAT2Q9NYQ8 4349 aa11.36□□□□□ -0.59
CRLF3-201ENST00000324238 ACYP2P14621 99 aa11.35□□□□□ -0.59
CRLF3-201ENST00000324238 IGKV2D-30A0A075B6S6 120 aa11.35□□□□□ -0.59
CRLF3-201ENST00000324238 IGKV2-30P06310 120 aa11.35□□□□□ -0.59
CRLF3-201ENST00000324238 A6NN06 94 aa11.34□□□□□ -0.59
CRLF3-201ENST00000324238 PKHD1P08F94 4074 aa11.32□□□□□ -0.6
CRLF3-201ENST00000324238 KTN1-AS1Q86SY8 53 aa11.32□□□□□ -0.6
CRLF3-201ENST00000324238 PKD1P98161 4303 aa11.31□□□□□ -0.6
CRLF3-201ENST00000324238 C8orf87E5RJ46 101 aa11.3□□□□□ -0.6
CRLF3-201ENST00000324238 FAM229AH3BQW9 127 aa11.27□□□□□ -0.61
CRLF3-201ENST00000324238 DMAC1Q96GE9 116 aa11.26□□□□□ -0.61
CRLF3-201ENST00000324238 SMR3BP02814 79 aaPredicted RBP11.24□□□□□ -0.61
CRLF3-201ENST00000324238 PLA2G1BP04054 148 aaKnown RBP11.24□□□□□ -0.61
CRLF3-201ENST00000324238 KRTAP16-1A8MUX0 517 aa11.22□□□□□ -0.61
CRLF3-201ENST00000324238 RBM12B-AS1Q9P1G2 102 aa11.22□□□□□ -0.61
CRLF3-201ENST00000324238 A0A1B0GU69 56 aa11.2□□□□□ -0.62
CRLF3-201ENST00000324238 KRTAP1-4P0C5Y4 121 aa11.2□□□□□ -0.62
CRLF3-201ENST00000324238 SPINK1P00995 79 aa11.2□□□□□ -0.62
CRLF3-201ENST00000324238 Q6ZSA8 131 aa11.16□□□□□ -0.62
CRLF3-201ENST00000324238 C4orf48Q5BLP8 95 aa11.15□□□□□ -0.62
CRLF3-201ENST00000324238 C7orf65Q6ZTY9 151 aa11.15□□□□□ -0.62
CRLF3-201ENST00000324238 PRAC1Q96KF2 57 aa11.15□□□□□ -0.62
CRLF3-201ENST00000324238 Q8N1X5 172 aa11.14□□□□□ -0.63
CRLF3-201ENST00000324238 TYMSOSQ8TAI1 123 aa11.14□□□□□ -0.63
CRLF3-201ENST00000324238 ADM2Q7Z4H4 148 aa11.14□□□□□ -0.63
CRLF3-201ENST00000324238 FAT1Q14517 4588 aa11.14□□□□□ -0.63
CRLF3-201ENST00000324238 SACSQ9NZJ4 4579 aa11.01□□□□□ -0.65
CRLF3-201ENST00000324238 C9orf92A6NGG3 77 aa11.01□□□□□ -0.65
CRLF3-201ENST00000324238 MIR22HGQ0VDD5 57 aa11□□□□□ -0.65
CRLF3-201ENST00000324238 DYNC1H1Q14204 4646 aaKnown RBP10.99□□□□□ -0.65
CRLF3-201ENST00000324238 UQCR11O14957 56 aa10.94□□□□□ -0.66
CRLF3-201ENST00000324238 SPATA8Q6RVD6 105 aa10.94□□□□□ -0.66
CRLF3-201ENST00000324238 LINC00304Q8N9R0 145 aa10.93□□□□□ -0.66
CRLF3-201ENST00000324238 KMT2CQ8NEZ4 4911 aaKnown RBP10.83□□□□□ -0.68
CRLF3-201ENST00000324238 DMBT1Q9UGM3 2413 aaPredicted RBP10.8□□□□□ -0.68
CRLF3-201ENST00000324238 FLG2Q5D862 2391 aaPredicted RBP10.8□□□□□ -0.68
CRLF3-201ENST00000324238 LRP1Q07954 4544 aaKnown RBP10.74□□□□□ -0.69
CRLF3-201ENST00000324238 APOBP04114 4563 aaKnown RBP10.74□□□□□ -0.69
CRLF3-201ENST00000324238 KRTAP3-1Q9BYR8 98 aa10.73□□□□□ -0.69
CRLF3-201ENST00000324238 CSAG1Q6PB30 78 aa10.69□□□□□ -0.7
CRLF3-201ENST00000324238 MYCBP2O75592 4640 aa10.67□□□□□ -0.7
CRLF3-201ENST00000324238 H0YAA0 97 aa10.66□□□□□ -0.7
CRLF3-201ENST00000324238 RYR2Q92736 4967 aa10.62□□□□□ -0.71
CRLF3-201ENST00000324238 A8MUU9 505 aa10.6□□□□□ -0.71
CRLF3-201ENST00000324238 A0A1B0GVY2 172 aa10.59□□□□□ -0.71
CRLF3-201ENST00000324238 KRTAP10-4P60372 401 aaPredicted RBP10.59□□□□□ -0.71
CRLF3-201ENST00000324238 C20orf166-AS1Q96NR2 134 aa10.59□□□□□ -0.71
CRLF3-201ENST00000324238 LINC01554Q52M75 96 aa10.56□□□□□ -0.72
CRLF3-201ENST00000324238 PKHD1L1Q86WI1 4243 aa10.56□□□□□ -0.72
CRLF3-201ENST00000324238 A0A1B0GU33 70 aa10.55□□□□□ -0.72
CRLF3-201ENST00000324238 RPS29P62273 56 aaKnown RBP10.53□□□□□ -0.72
CRLF3-201ENST00000324238 CRIPTQ9P021 101 aa10.51□□□□□ -0.73
CRLF3-201ENST00000324238 H1FX-AS1Q4G0G2 97 aa10.46□□□□□ -0.74
CRLF3-201ENST00000324238 HSPG2P98160 4391 aa10.45□□□□□ -0.74
CRLF3-201ENST00000324238 RYR3Q15413 4870 aa10.4□□□□□ -0.74
CRLF3-201ENST00000324238 COX6B2Q6YFQ2 88 aa10.38□□□□□ -0.75
CRLF3-201ENST00000324238 KIAA1109Q2LD37 5005 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms