RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 DNAH6Q9C0G6 4158 aa10.29□□□□□ -0.76
COL9A1-201ENST00000320755 TP53AIP1Q9HCN2 124 aa10.29□□□□□ -0.76
COL9A1-201ENST00000320755 A8MUN3 132 aa10.28□□□□□ -0.76
COL9A1-201ENST00000320755 ASB16-AS1Q495Z4 193 aa10.28□□□□□ -0.76
COL9A1-201ENST00000320755 MRPL34Q9BQ48 92 aaKnown RBP10.28□□□□□ -0.76
COL9A1-201ENST00000320755 CD164Q04900 197 aa10.27□□□□□ -0.77
COL9A1-201ENST00000320755 DNAH11Q96DT5 4516 aa10.24□□□□□ -0.77
COL9A1-201ENST00000320755 COA5Q86WW8 74 aa10.23□□□□□ -0.77
COL9A1-201ENST00000320755 IGLV7-46A0A075B6I9 117 aa10.22□□□□□ -0.77
COL9A1-201ENST00000320755 Q5W150 140 aa10.18□□□□□ -0.78
COL9A1-201ENST00000320755 Q8N9P0 234 aaPredicted RBP10.18□□□□□ -0.78
COL9A1-201ENST00000320755 PRR15LQ9BU68 103 aa10.17□□□□□ -0.78
COL9A1-201ENST00000320755 RETNLBQ9BQ08 111 aa10.16□□□□□ -0.78
COL9A1-201ENST00000320755 V9GYY9 64 aa10.16□□□□□ -0.78
COL9A1-201ENST00000320755 KRTAP10-1P60331 282 aa10.15□□□□□ -0.79
COL9A1-201ENST00000320755 DNAH5Q8TE73 4624 aa10.14□□□□□ -0.79
COL9A1-201ENST00000320755 ALMS1Q8TCU4 4167 aa10.14□□□□□ -0.79
COL9A1-201ENST00000320755 SSBP3-AS1Q7Z2R9 100 aa10.14□□□□□ -0.79
COL9A1-201ENST00000320755 CHKB-CPT1BH3BT56 60 aa10.13□□□□□ -0.79
COL9A1-201ENST00000320755 Q5VV11 94 aa10.13□□□□□ -0.79
COL9A1-201ENST00000320755 A8MU10 97 aa10.13□□□□□ -0.79
COL9A1-201ENST00000320755 LRP1BQ9NZR2 4599 aa10.11□□□□□ -0.79
COL9A1-201ENST00000320755 SPAG11AQ6PDA7 123 aa10.11□□□□□ -0.79
COL9A1-201ENST00000320755 KRTAP13-2Q52LG2 175 aa10.1□□□□□ -0.79
COL9A1-201ENST00000320755 LIMD2Q9BT23 127 aa10.1□□□□□ -0.79
COL9A1-201ENST00000320755 HRES1P13985 223 aa10.07□□□□□ -0.8
COL9A1-201ENST00000320755 LINC00313P59037 77 aa10.07□□□□□ -0.8
COL9A1-201ENST00000320755 C1orf195Q5TG92 126 aa10.06□□□□□ -0.8
COL9A1-201ENST00000320755 LOC101927531A0A1B0GV80 90 aa10.05□□□□□ -0.8
COL9A1-201ENST00000320755 HYDINQ4G0P3 5121 aa10.04□□□□□ -0.8
COL9A1-201ENST00000320755 C8orf87E5RJ46 101 aa10.01□□□□□ -0.81
COL9A1-201ENST00000320755 KRTAP13-3Q3SY46 172 aa10.01□□□□□ -0.81
COL9A1-201ENST00000320755 PRR26Q8N8Z3 221 aa10□□□□□ -0.81
COL9A1-201ENST00000320755 Q6ZSA8 131 aa10□□□□□ -0.81
COL9A1-201ENST00000320755 A6NED7 52 aa9.99□□□□□ -0.81
COL9A1-201ENST00000320755 PKD1P98161 4303 aa9.97□□□□□ -0.81
COL9A1-201ENST00000320755 PLA2G1BP04054 148 aaKnown RBP9.97□□□□□ -0.81
COL9A1-201ENST00000320755 KRTAP1-4P0C5Y4 121 aa9.95□□□□□ -0.82
COL9A1-201ENST00000320755 SPTSSBQ8NFR3 76 aa9.95□□□□□ -0.82
COL9A1-201ENST00000320755 VPS13BQ7Z7G8 4022 aa9.95□□□□□ -0.82
COL9A1-201ENST00000320755 FAT2Q9NYQ8 4349 aa9.94□□□□□ -0.82
COL9A1-201ENST00000320755 C4orf48Q5BLP8 95 aa9.93□□□□□ -0.82
COL9A1-201ENST00000320755 FAM229AH3BQW9 127 aa9.92□□□□□ -0.82
COL9A1-201ENST00000320755 SEC61GP60059 68 aa9.92□□□□□ -0.82
COL9A1-201ENST00000320755 Q75L30 129 aa9.92□□□□□ -0.82
COL9A1-201ENST00000320755 TYMSOSQ8TAI1 123 aa9.91□□□□□ -0.82
COL9A1-201ENST00000320755 LINC01558Q9Y6Z2 57 aa9.91□□□□□ -0.82
COL9A1-201ENST00000320755 LCA10Q71F78 164 aa9.9□□□□□ -0.82
COL9A1-201ENST00000320755 IGKV2D-30A0A075B6S6 120 aa9.89□□□□□ -0.83
COL9A1-201ENST00000320755 IGKV2-30P06310 120 aa9.89□□□□□ -0.83
COL9A1-201ENST00000320755 ACYP2P14621 99 aa9.89□□□□□ -0.83
COL9A1-201ENST00000320755 PMAIP1Q13794 54 aa9.89□□□□□ -0.83
COL9A1-201ENST00000320755 SMR3BP02814 79 aaPredicted RBP9.86□□□□□ -0.83
COL9A1-201ENST00000320755 KRTAP16-1A8MUX0 517 aa9.85□□□□□ -0.83
COL9A1-201ENST00000320755 PKHD1P08F94 4074 aa9.84□□□□□ -0.83
COL9A1-201ENST00000320755 SPINK7P58062 85 aa9.84□□□□□ -0.83
COL9A1-201ENST00000320755 DMAC1Q96GE9 116 aa9.8□□□□□ -0.84
COL9A1-201ENST00000320755 SPINK1P00995 79 aa9.77□□□□□ -0.85
COL9A1-201ENST00000320755 CDC42SE1Q9NRR8 79 aa9.75□□□□□ -0.85
COL9A1-201ENST00000320755 LINC00304Q8N9R0 145 aa9.74□□□□□ -0.85
COL9A1-201ENST00000320755 ATP11AUNQ6ZP68 121 aa9.72□□□□□ -0.85
COL9A1-201ENST00000320755 C7orf65Q6ZTY9 151 aa9.71□□□□□ -0.85
COL9A1-201ENST00000320755 FAT1Q14517 4588 aa9.68□□□□□ -0.86
COL9A1-201ENST00000320755 C9orf92A6NGG3 77 aa9.67□□□□□ -0.86
COL9A1-201ENST00000320755 A0A1B0GU69 56 aa9.67□□□□□ -0.86
COL9A1-201ENST00000320755 SACSQ9NZJ4 4579 aa9.66□□□□□ -0.86
COL9A1-201ENST00000320755 Q8N1X5 172 aa9.66□□□□□ -0.86
COL9A1-201ENST00000320755 DYNC1H1Q14204 4646 aaKnown RBP9.63□□□□□ -0.87
COL9A1-201ENST00000320755 A6NN06 94 aa9.58□□□□□ -0.88
COL9A1-201ENST00000320755 KTN1-AS1Q86SY8 53 aa9.54□□□□□ -0.88
COL9A1-201ENST00000320755 RPS29P62273 56 aaKnown RBP9.49□□□□□ -0.89
COL9A1-201ENST00000320755 A0A1B0GVY2 172 aa9.47□□□□□ -0.89
COL9A1-201ENST00000320755 APOBP04114 4563 aaKnown RBP9.45□□□□□ -0.9
COL9A1-201ENST00000320755 KRTAP10-4P60372 401 aaPredicted RBP9.45□□□□□ -0.9
COL9A1-201ENST00000320755 KRTAP21-3Q3LHN1 58 aa9.45□□□□□ -0.9
COL9A1-201ENST00000320755 UQCR11O14957 56 aa9.44□□□□□ -0.9
COL9A1-201ENST00000320755 MIR22HGQ0VDD5 57 aa9.44□□□□□ -0.9
COL9A1-201ENST00000320755 DMBT1Q9UGM3 2413 aaPredicted RBP9.41□□□□□ -0.9
COL9A1-201ENST00000320755 FLG2Q5D862 2391 aaPredicted RBP9.41□□□□□ -0.9
COL9A1-201ENST00000320755 A8MUU9 505 aa9.4□□□□□ -0.9
COL9A1-201ENST00000320755 SPATA8Q6RVD6 105 aa9.4□□□□□ -0.91
COL9A1-201ENST00000320755 C20orf166-AS1Q96NR2 134 aa9.4□□□□□ -0.91
COL9A1-201ENST00000320755 KMT2CQ8NEZ4 4911 aaKnown RBP9.36□□□□□ -0.91
COL9A1-201ENST00000320755 RBM12B-AS1Q9P1G2 102 aa9.35□□□□□ -0.91
COL9A1-201ENST00000320755 KRTAP3-1Q9BYR8 98 aa9.33□□□□□ -0.92
COL9A1-201ENST00000320755 LRP1Q07954 4544 aaKnown RBP9.33□□□□□ -0.92
COL9A1-201ENST00000320755 PRAC1Q96KF2 57 aa9.32□□□□□ -0.92
COL9A1-201ENST00000320755 ADM2Q7Z4H4 148 aa9.31□□□□□ -0.92
COL9A1-201ENST00000320755 PKHD1L1Q86WI1 4243 aa9.31□□□□□ -0.92
COL9A1-201ENST00000320755 RYR2Q92736 4967 aa9.29□□□□□ -0.92
COL9A1-201ENST00000320755 MYCBP2O75592 4640 aa9.2□□□□□ -0.94
COL9A1-201ENST00000320755 Q5VSD8 79 aa9.18□□□□□ -0.94
COL9A1-201ENST00000320755 COX6B2Q6YFQ2 88 aa9.15□□□□□ -0.94
COL9A1-201ENST00000320755 H0YAA0 97 aa9.15□□□□□ -0.95
COL9A1-201ENST00000320755 A0A1B0GU33 70 aa9.14□□□□□ -0.95
COL9A1-201ENST00000320755 FAT3Q8TDW7 4589 aa9.14□□□□□ -0.95
COL9A1-201ENST00000320755 KRTAP10-8P60410 259 aa9.11□□□□□ -0.95
COL9A1-201ENST00000320755 HSPG2P98160 4391 aa9.11□□□□□ -0.95
COL9A1-201ENST00000320755 TNXBP22105 4242 aa9.09□□□□□ -0.95
COL9A1-201ENST00000320755 H1FX-AS1Q4G0G2 97 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms