RNA–Protein interactions for RNA: ENST00000320578.2

RAB39A-201, Transcript of RAB39A, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB39A, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB39A-201ENST00000320578 PKHD1L1Q86WI1 4243 aa10.22□□□□□ -0.77
RAB39A-201ENST00000320578 IGHV6-1A0A0B4J1U7 121 aa10.21□□□□□ -0.77
RAB39A-201ENST00000320578 Q5VSD8 79 aa10.21□□□□□ -0.77
RAB39A-201ENST00000320578 C8orf87E5RJ46 101 aa10.21□□□□□ -0.78
RAB39A-201ENST00000320578 KLKP1Q107X0 134 aa10.21□□□□□ -0.78
RAB39A-201ENST00000320578 C20orf197Q8N268 126 aa10.2□□□□□ -0.78
RAB39A-201ENST00000320578 HSPG2P98160 4391 aa10.18□□□□□ -0.78
RAB39A-201ENST00000320578 C5orf47Q569G3 176 aa10.18□□□□□ -0.78
RAB39A-201ENST00000320578 TMEM254Q8TBM7 123 aa10.18□□□□□ -0.78
RAB39A-201ENST00000320578 RYR1P21817 5038 aa10.17□□□□□ -0.78
RAB39A-201ENST00000320578 TP53AIP1Q9HCN2 124 aa10.14□□□□□ -0.79
RAB39A-201ENST00000320578 MRPL34Q9BQ48 92 aaKnown RBP10.14□□□□□ -0.79
RAB39A-201ENST00000320578 A0A0U1RQV1 116 aa10.13□□□□□ -0.79
RAB39A-201ENST00000320578 NDUFC1O43677 76 aa10.12□□□□□ -0.79
RAB39A-201ENST00000320578 NOTCH2NLQ7Z3S9 236 aa10.12□□□□□ -0.79
RAB39A-201ENST00000320578 CYSTM1Q9H1C7 97 aa10.12□□□□□ -0.79
RAB39A-201ENST00000320578 Q8N1X5 172 aa10.11□□□□□ -0.79
RAB39A-201ENST00000320578 LINC00313P59037 77 aa10.1□□□□□ -0.79
RAB39A-201ENST00000320578 KRTAP10-8P60410 259 aa10.09□□□□□ -0.79
RAB39A-201ENST00000320578 H3BPC8 53 aa10.08□□□□□ -0.8
RAB39A-201ENST00000320578 SNURFQ9Y675 71 aa10.08□□□□□ -0.8
RAB39A-201ENST00000320578 TMEM258P61165 79 aa10.07□□□□□ -0.8
RAB39A-201ENST00000320578 MP68P56378 58 aa10.07□□□□□ -0.8
RAB39A-201ENST00000320578 H7BZZ5 65 aa10.05□□□□□ -0.8
RAB39A-201ENST00000320578 ZCCHC13Q8WW36 166 aaKnown RBP10.05□□□□□ -0.8
RAB39A-201ENST00000320578 KRTAP17-1Q9BYP8 105 aa10.04□□□□□ -0.8
RAB39A-201ENST00000320578 TRAV22A0A0B4J277 110 aa10.02□□□□□ -0.81
RAB39A-201ENST00000320578 H0Y9P7 68 aa10.02□□□□□ -0.81
RAB39A-201ENST00000320578 Q8N9P0 234 aaPredicted RBP10.01□□□□□ -0.81
RAB39A-201ENST00000320578 KRTAP16-1A8MUX0 517 aa10□□□□□ -0.81
RAB39A-201ENST00000320578 NDUFS5O43920 106 aa10□□□□□ -0.81
RAB39A-201ENST00000320578 KIAA1109Q2LD37 5005 aa9.98□□□□□ -0.81
RAB39A-201ENST00000320578 EPPK1P58107 5090 aaKnown RBP9.96□□□□□ -0.81
RAB39A-201ENST00000320578 LINC00208Q96KT6 92 aa9.96□□□□□ -0.82
RAB39A-201ENST00000320578 ATP5EP56381 51 aaPredicted RBP9.93□□□□□ -0.82
RAB39A-201ENST00000320578 C1orf64Q8NEQ6 169 aa9.93□□□□□ -0.82
RAB39A-201ENST00000320578 TNXBP22105 4242 aa9.92□□□□□ -0.82
RAB39A-201ENST00000320578 KRTAP13-3Q3SY46 172 aa9.91□□□□□ -0.82
RAB39A-201ENST00000320578 FAM236DA0A1B0GTK5 79 aa9.91□□□□□ -0.82
RAB39A-201ENST00000320578 FAM236CP0DP71 79 aa9.91□□□□□ -0.82
RAB39A-201ENST00000320578 FLG2Q5D862 2391 aaPredicted RBP9.9□□□□□ -0.82
RAB39A-201ENST00000320578 FAT3Q8TDW7 4589 aa9.89□□□□□ -0.83
RAB39A-201ENST00000320578 OXTP01178 125 aa9.88□□□□□ -0.83
RAB39A-201ENST00000320578 LRP1Q07954 4544 aaKnown RBP9.87□□□□□ -0.83
RAB39A-201ENST00000320578 MT1HL1P0DM35 61 aa9.87□□□□□ -0.83
RAB39A-201ENST00000320578 Q5W150 140 aa9.86□□□□□ -0.83
RAB39A-201ENST00000320578 FP248Q71RG6 208 aaPredicted RBP9.86□□□□□ -0.83
RAB39A-201ENST00000320578 LOC101927531A0A1B0GV80 90 aa9.85□□□□□ -0.83
RAB39A-201ENST00000320578 RPS28P62857 69 aaKnown RBP9.84□□□□□ -0.83
RAB39A-201ENST00000320578 SPANXA2-OT1Q8N9U9 137 aa9.82□□□□□ -0.84
RAB39A-201ENST00000320578 RETNLBQ9BQ08 111 aa9.82□□□□□ -0.84
RAB39A-201ENST00000320578 C20orf166-AS1Q96NR2 134 aa9.79□□□□□ -0.84
RAB39A-201ENST00000320578 A8MUU9 505 aa9.79□□□□□ -0.84
RAB39A-201ENST00000320578 CYP4F30PQ9H0H9 118 aa9.77□□□□□ -0.85
RAB39A-201ENST00000320578 SERP1Q9Y6X1 66 aa9.76□□□□□ -0.85
RAB39A-201ENST00000320578 C9orf92A6NGG3 77 aa9.74□□□□□ -0.85
RAB39A-201ENST00000320578 KRTAP4-5Q9BYR2 181 aa9.74□□□□□ -0.85
RAB39A-201ENST00000320578 IGLV7-46A0A075B6I9 117 aa9.72□□□□□ -0.85
RAB39A-201ENST00000320578 IGKV2-30P06310 120 aa9.72□□□□□ -0.85
RAB39A-201ENST00000320578 DMBT1Q9UGM3 2413 aaPredicted RBP9.71□□□□□ -0.86
RAB39A-201ENST00000320578 Q75L30 129 aa9.7□□□□□ -0.86
RAB39A-201ENST00000320578 PCOTHQ58A44 107 aa9.69□□□□□ -0.86
RAB39A-201ENST00000320578 MYCBP2O75592 4640 aa9.69□□□□□ -0.86
RAB39A-201ENST00000320578 BIRC6Q9NR09 4857 aa9.67□□□□□ -0.86
RAB39A-201ENST00000320578 PRR4Q16378 134 aa9.6□□□□□ -0.87
RAB39A-201ENST00000320578 C7orf65Q6ZTY9 151 aa9.59□□□□□ -0.87
RAB39A-201ENST00000320578 HERC2O95714 4834 aa9.59□□□□□ -0.87
RAB39A-201ENST00000320578 IGKV2D-30A0A075B6S6 120 aa9.58□□□□□ -0.88
RAB39A-201ENST00000320578 HRES1P13985 223 aa9.57□□□□□ -0.88
RAB39A-201ENST00000320578 RPL37P61927 97 aaKnown RBP9.55□□□□□ -0.88
RAB39A-201ENST00000320578 XP32Q5T750 250 aa9.54□□□□□ -0.88
RAB39A-201ENST00000320578 TPRXLQ17RH7 258 aa9.54□□□□□ -0.88
RAB39A-201ENST00000320578 SMIM26A0A096LP01 95 aa9.52□□□□□ -0.89
RAB39A-201ENST00000320578 ATP11AUNQ6ZP68 121 aa9.51□□□□□ -0.89
RAB39A-201ENST00000320578 DMAC1Q96GE9 116 aa9.49□□□□□ -0.89
RAB39A-201ENST00000320578 J3QL48 77 aa9.49□□□□□ -0.89
RAB39A-201ENST00000320578 ABCA13Q86UQ4 5058 aa9.48□□□□□ -0.89
RAB39A-201ENST00000320578 ACYP2P14621 99 aa9.46□□□□□ -0.9
RAB39A-201ENST00000320578 COA5Q86WW8 74 aa9.46□□□□□ -0.9
RAB39A-201ENST00000320578 SPINK7P58062 85 aa9.45□□□□□ -0.9
RAB39A-201ENST00000320578 A8MUN3 132 aa9.4□□□□□ -0.91
RAB39A-201ENST00000320578 Q1T7F1 81 aa9.33□□□□□ -0.92
RAB39A-201ENST00000320578 C4orf26Q17RF5 130 aa9.32□□□□□ -0.92
RAB39A-201ENST00000320578 V9GYY9 64 aa9.31□□□□□ -0.92
RAB39A-201ENST00000320578 CHKB-CPT1BH3BT56 60 aa9.26□□□□□ -0.93
RAB39A-201ENST00000320578 COX6B2Q6YFQ2 88 aa9.26□□□□□ -0.93
RAB39A-201ENST00000320578 MPLKIPQ8TAP9 179 aa9.25□□□□□ -0.93
RAB39A-201ENST00000320578 KRTAP3-1Q9BYR8 98 aa9.24□□□□□ -0.93
RAB39A-201ENST00000320578 SEC61BP60468 96 aaKnown RBP9.19□□□□□ -0.94
RAB39A-201ENST00000320578 LINC01558Q9Y6Z2 57 aa9.17□□□□□ -0.94
RAB39A-201ENST00000320578 LRP2P98164 4655 aa9.16□□□□□ -0.94
RAB39A-201ENST00000320578 LPAP08519 4548 aa9.12□□□□□ -0.95
RAB39A-201ENST00000320578 SPTSSBQ8NFR3 76 aa9.12□□□□□ -0.95
RAB39A-201ENST00000320578 PCLOQ9Y6V0 5065 aa9.08□□□□□ -0.96
RAB39A-201ENST00000320578 PSPHP1O15172 72 aa9.05□□□□□ -0.96
RAB39A-201ENST00000320578 PRR15LQ9BU68 103 aa9.04□□□□□ -0.96
RAB39A-201ENST00000320578 RBM12B-AS1Q9P1G2 102 aa9.03□□□□□ -0.96
RAB39A-201ENST00000320578 Q5VV11 94 aa9.03□□□□□ -0.96
RAB39A-201ENST00000320578 H1FX-AS1Q4G0G2 97 aa9□□□□□ -0.97
RAB39A-201ENST00000320578 MUC17Q685J3 4493 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms