RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 DSCR8Q96T75 97 aa8.45□□□□□ -1.06
HDDC2-201ENST00000318787 BATFQ16520 125 aa8.44□□□□□ -1.06
HDDC2-201ENST00000318787 MT1HP80294 61 aa8.43□□□□□ -1.06
HDDC2-201ENST00000318787 ATXN8Q156A1 80 aa8.42□□□□□ -1.06
HDDC2-201ENST00000318787 TSTD3H0UI37 97 aa8.41□□□□□ -1.06
HDDC2-201ENST00000318787 LINC00313P59037 77 aa8.41□□□□□ -1.06
HDDC2-201ENST00000318787 M0R2T5 61 aa8.4□□□□□ -1.06
HDDC2-201ENST00000318787 C20orf166-AS1Q96NR2 134 aa8.4□□□□□ -1.06
HDDC2-201ENST00000318787 IGHV6-1A0A0B4J1U7 121 aa8.39□□□□□ -1.07
HDDC2-201ENST00000318787 C9JAW5 83 aa8.39□□□□□ -1.07
HDDC2-201ENST00000318787 A8MUU9 505 aa8.38□□□□□ -1.07
HDDC2-201ENST00000318787 LINC00472Q9H8W2 130 aa8.37□□□□□ -1.07
HDDC2-201ENST00000318787 KRTAP4-9Q9BYQ8 210 aa8.36□□□□□ -1.07
HDDC2-201ENST00000318787 LYRM7Q5U5X0 104 aa8.35□□□□□ -1.07
HDDC2-201ENST00000318787 NOTCH2NLQ7Z3S9 236 aa8.35□□□□□ -1.07
HDDC2-201ENST00000318787 JMJD7-PLA2G4BH0Y9G9 81 aa8.32□□□□□ -1.08
HDDC2-201ENST00000318787 KRTAP16-1A8MUX0 517 aa8.31□□□□□ -1.08
HDDC2-201ENST00000318787 LCE4AQ5TA78 99 aa8.31□□□□□ -1.08
HDDC2-201ENST00000318787 TRBV20-1A0A075B6N2 111 aa8.3□□□□□ -1.08
HDDC2-201ENST00000318787 LOC105371267A0A1B0GV96 52 aa8.3□□□□□ -1.08
HDDC2-201ENST00000318787 C14orf132Q9NPU4 83 aa8.3□□□□□ -1.08
HDDC2-201ENST00000318787 A0A1B0GVX0 72 aa8.29□□□□□ -1.08
HDDC2-201ENST00000318787 Q6ZQT0 140 aa8.29□□□□□ -1.08
HDDC2-201ENST00000318787 C21orf62-AS1Q17RA5 79 aa8.28□□□□□ -1.08
HDDC2-201ENST00000318787 FSIP2Q5CZC0 6907 aa8.26□□□□□ -1.09
HDDC2-201ENST00000318787 C8orf87E5RJ46 101 aa8.26□□□□□ -1.09
HDDC2-201ENST00000318787 J3KT08 172 aa8.26□□□□□ -1.09
HDDC2-201ENST00000318787 KRTAP10-6P60371 365 aaPredicted RBP8.26□□□□□ -1.09
HDDC2-201ENST00000318787 LOC110117498A0A087WWA1 95 aa8.25□□□□□ -1.09
HDDC2-201ENST00000318787 NDUFB1O75438 58 aa8.24□□□□□ -1.09
HDDC2-201ENST00000318787 MTURNQ8N3F0 131 aa8.24□□□□□ -1.09
HDDC2-201ENST00000318787 FLGP20930 4061 aaPredicted RBP8.24□□□□□ -1.09
HDDC2-201ENST00000318787 C9orf118A6NHY6 69 aa8.23□□□□□ -1.09
HDDC2-201ENST00000318787 PDE6GP18545 87 aa8.22□□□□□ -1.09
HDDC2-201ENST00000318787 FAM236DA0A1B0GTK5 79 aa8.22□□□□□ -1.09
HDDC2-201ENST00000318787 FAM236CP0DP71 79 aa8.22□□□□□ -1.09
HDDC2-201ENST00000318787 TAX1BP3O14907 124 aa8.21□□□□□ -1.1
HDDC2-201ENST00000318787 A0A1W2PPM0 123 aa8.2□□□□□ -1.1
HDDC2-201ENST00000318787 KRTAP4-2Q9BYR5 136 aa8.2□□□□□ -1.1
HDDC2-201ENST00000318787 KRTAP9-7A8MTY7 169 aa8.18□□□□□ -1.1
HDDC2-201ENST00000318787 NREPQ16612 68 aa8.18□□□□□ -1.1
HDDC2-201ENST00000318787 A0A1B0GW54 56 aa8.17□□□□□ -1.1
HDDC2-201ENST00000318787 A8MWP4 228 aa8.17□□□□□ -1.1
HDDC2-201ENST00000318787 CRCT1Q9UGL9 99 aa8.17□□□□□ -1.1
HDDC2-201ENST00000318787 H3BT86 120 aa8.16□□□□□ -1.1
HDDC2-201ENST00000318787 C8orf17Q9NRJ1 99 aa8.16□□□□□ -1.1
HDDC2-201ENST00000318787 RBM12B-AS1Q9P1G2 102 aa8.15□□□□□ -1.1
HDDC2-201ENST00000318787 IGKV3D-7A0A0C4DH55 119 aa8.14□□□□□ -1.11
HDDC2-201ENST00000318787 ZCCHC13Q8WW36 166 aaKnown RBP8.14□□□□□ -1.11
HDDC2-201ENST00000318787 SPCS1Q9Y6A9 102 aa8.12□□□□□ -1.11
HDDC2-201ENST00000318787 HRES1P13985 223 aa8.1□□□□□ -1.11
HDDC2-201ENST00000318787 Q6ZVQ6 151 aa8.1□□□□□ -1.11
HDDC2-201ENST00000318787 PRR15Q8IV56 129 aa8.09□□□□□ -1.12
HDDC2-201ENST00000318787 Q8N9P0 234 aaPredicted RBP8.08□□□□□ -1.12
HDDC2-201ENST00000318787 SPINK7P58062 85 aa8.06□□□□□ -1.12
HDDC2-201ENST00000318787 KRTAP4-11Q9BYQ6 195 aa8.06□□□□□ -1.12
HDDC2-201ENST00000318787 K7EQZ3 153 aa8.05□□□□□ -1.12
HDDC2-201ENST00000318787 NDUFS5O43920 106 aa8.05□□□□□ -1.12
HDDC2-201ENST00000318787 COL5A1-AS1Q5SY13 56 aa8.05□□□□□ -1.12
HDDC2-201ENST00000318787 MMP24-AS1A0A0U1RRL7 71 aa8.04□□□□□ -1.12
HDDC2-201ENST00000318787 BPY2O14599 106 aa8.03□□□□□ -1.12
HDDC2-201ENST00000318787 MPLKIPQ8TAP9 179 aa8.03□□□□□ -1.12
HDDC2-201ENST00000318787 MRPL34Q9BQ48 92 aaKnown RBP8.02□□□□□ -1.13
HDDC2-201ENST00000318787 hDV103S1A0JD37 113 aa8.01□□□□□ -1.13
HDDC2-201ENST00000318787 TMEM254Q8TBM7 123 aa8.01□□□□□ -1.13
HDDC2-201ENST00000318787 WFDC13Q8IUB5 93 aa7.98□□□□□ -1.13
HDDC2-201ENST00000318787 PCP4L1A6NKN8 68 aa7.97□□□□□ -1.13
HDDC2-201ENST00000318787 Q8N9L7 120 aa7.97□□□□□ -1.13
HDDC2-201ENST00000318787 K7EP34 96 aa7.96□□□□□ -1.14
HDDC2-201ENST00000318787 LCE5AQ5TCM9 118 aa7.95□□□□□ -1.14
HDDC2-201ENST00000318787 KRTAP9-8Q9BYQ0 159 aa7.95□□□□□ -1.14
HDDC2-201ENST00000318787 PRO0461Q9UI25 63 aa7.92□□□□□ -1.14
HDDC2-201ENST00000318787 CASC2Q6XLA1 102 aa7.91□□□□□ -1.14
HDDC2-201ENST00000318787 UBL5Q9BZL1 73 aa7.91□□□□□ -1.14
HDDC2-201ENST00000318787 KRTAP9-3Q9BYQ3 159 aa7.9□□□□□ -1.14
HDDC2-201ENST00000318787 IGKV2D-30A0A075B6S6 120 aa7.89□□□□□ -1.15
HDDC2-201ENST00000318787 IGKV2-30P06310 120 aa7.89□□□□□ -1.15
HDDC2-201ENST00000318787 GTF2H5Q6ZYL4 71 aa7.89□□□□□ -1.15
HDDC2-201ENST00000318787 LINC00846Q9NV44 126 aa7.89□□□□□ -1.15
HDDC2-201ENST00000318787 HCG22E2RYF7 251 aa7.88□□□□□ -1.15
HDDC2-201ENST00000318787 MT2AP02795 61 aa7.87□□□□□ -1.15
HDDC2-201ENST00000318787 KRTAP10-10P60014 251 aa7.84□□□□□ -1.15
HDDC2-201ENST00000318787 Q5W150 140 aa7.84□□□□□ -1.15
HDDC2-201ENST00000318787 MT1FP04733 61 aa7.83□□□□□ -1.16
HDDC2-201ENST00000318787 C7orf65Q6ZTY9 151 aa7.83□□□□□ -1.16
HDDC2-201ENST00000318787 USH2AO75445 5202 aa7.82□□□□□ -1.16
HDDC2-201ENST00000318787 F8W1H4 67 aa7.8□□□□□ -1.16
HDDC2-201ENST00000318787 ETDBQ3ZM63 59 aa7.8□□□□□ -1.16
HDDC2-201ENST00000318787 CXCL6P80162 114 aa7.77□□□□□ -1.17
HDDC2-201ENST00000318787 SSPOA2VEC9 5147 aa7.77□□□□□ -1.17
HDDC2-201ENST00000318787 H1FX-AS1Q4G0G2 97 aa7.76□□□□□ -1.17
HDDC2-201ENST00000318787 C4orf26Q17RF5 130 aa7.72□□□□□ -1.17
HDDC2-201ENST00000318787 TP53AIP1Q9HCN2 124 aa7.63□□□□□ -1.19
HDDC2-201ENST00000318787 FCGBPQ9Y6R7 5405 aaPredicted RBP7.6□□□□□ -1.19
HDDC2-201ENST00000318787 ACYP1P07311 99 aa7.59□□□□□ -1.2
HDDC2-201ENST00000318787 HIST1H4AP62805 103 aaKnown RBP7.58□□□□□ -1.2
HDDC2-201ENST00000318787 C5orf47Q569G3 176 aa7.58□□□□□ -1.2
HDDC2-201ENST00000318787 C1orf64Q8NEQ6 169 aa7.57□□□□□ -1.2
HDDC2-201ENST00000318787 KRTAP3-1Q9BYR8 98 aa7.56□□□□□ -1.2
HDDC2-201ENST00000318787 S4R3F8 94 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms