RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 PLAC8Q9NZF1 115 aa7.72□□□□□ -1.17
HIF3A-204ENST00000300862 PRR15LQ9BU68 103 aa7.71□□□□□ -1.17
HIF3A-204ENST00000300862 CHKB-CPT1BH3BT56 60 aa7.71□□□□□ -1.18
HIF3A-204ENST00000300862 ZNF861PO60384 105 aa7.71□□□□□ -1.18
HIF3A-204ENST00000300862 LIMD2Q9BT23 127 aa7.71□□□□□ -1.18
HIF3A-204ENST00000300862 IGHV6-1A0A0B4J1U7 121 aa7.7□□□□□ -1.18
HIF3A-204ENST00000300862 LCA10Q71F78 164 aa7.7□□□□□ -1.18
HIF3A-204ENST00000300862 ZNF706Q9Y5V0 76 aaPredicted RBP7.7□□□□□ -1.18
HIF3A-204ENST00000300862 C1orf134Q5TEV5 83 aa7.69□□□□□ -1.18
HIF3A-204ENST00000300862 DNAH6Q9C0G6 4158 aa7.69□□□□□ -1.18
HIF3A-204ENST00000300862 LY6G6CO95867 125 aa7.69□□□□□ -1.18
HIF3A-204ENST00000300862 COA5Q86WW8 74 aa7.68□□□□□ -1.18
HIF3A-204ENST00000300862 A0A087X002 238 aa7.67□□□□□ -1.18
HIF3A-204ENST00000300862 NOTCH2NLQ7Z3S9 236 aa7.67□□□□□ -1.18
HIF3A-204ENST00000300862 C8orf17Q9NRJ1 99 aa7.67□□□□□ -1.18
HIF3A-204ENST00000300862 IGLV7-46A0A075B6I9 117 aa7.65□□□□□ -1.18
HIF3A-204ENST00000300862 PCOTHQ58A44 107 aa7.65□□□□□ -1.18
HIF3A-204ENST00000300862 SPINK6Q6UWN8 80 aa7.65□□□□□ -1.18
HIF3A-204ENST00000300862 C7orf65Q6ZTY9 151 aa7.65□□□□□ -1.18
HIF3A-204ENST00000300862 A0A1B0GVX0 72 aa7.65□□□□□ -1.19
HIF3A-204ENST00000300862 Q75L30 129 aa7.65□□□□□ -1.19
HIF3A-204ENST00000300862 LOC101927531A0A1B0GV80 90 aa7.64□□□□□ -1.19
HIF3A-204ENST00000300862 A6NN06 94 aa7.64□□□□□ -1.19
HIF3A-204ENST00000300862 CDK2AP2O75956 126 aa7.64□□□□□ -1.19
HIF3A-204ENST00000300862 IGLV7-43P04211 117 aa7.64□□□□□ -1.19
HIF3A-204ENST00000300862 ASB16-AS1Q495Z4 193 aa7.64□□□□□ -1.19
HIF3A-204ENST00000300862 CIRBP-AS1Q8TBR5 109 aa7.64□□□□□ -1.19
HIF3A-204ENST00000300862 ATP11AUNQ6ZP68 121 aa7.63□□□□□ -1.19
HIF3A-204ENST00000300862 DNAH11Q96DT5 4516 aa7.62□□□□□ -1.19
HIF3A-204ENST00000300862 KRTAP10-2P60368 255 aa7.62□□□□□ -1.19
HIF3A-204ENST00000300862 A6NED7 52 aa7.6□□□□□ -1.19
HIF3A-204ENST00000300862 SPTSSBQ8NFR3 76 aa7.6□□□□□ -1.19
HIF3A-204ENST00000300862 ALMS1Q8TCU4 4167 aa7.6□□□□□ -1.19
HIF3A-204ENST00000300862 DNAH5Q8TE73 4624 aa7.59□□□□□ -1.19
HIF3A-204ENST00000300862 MRPL34Q9BQ48 92 aaKnown RBP7.58□□□□□ -1.2
HIF3A-204ENST00000300862 TP53AIP1Q9HCN2 124 aa7.58□□□□□ -1.2
HIF3A-204ENST00000300862 SPAG11AQ6PDA7 123 aa7.56□□□□□ -1.2
HIF3A-204ENST00000300862 HYDINQ4G0P3 5121 aa7.55□□□□□ -1.2
HIF3A-204ENST00000300862 LINC01558Q9Y6Z2 57 aa7.55□□□□□ -1.2
HIF3A-204ENST00000300862 CDC42SE1Q9NRR8 79 aa7.54□□□□□ -1.2
HIF3A-204ENST00000300862 LRP1BQ9NZR2 4599 aa7.53□□□□□ -1.2
HIF3A-204ENST00000300862 LINC00313P59037 77 aa7.53□□□□□ -1.2
HIF3A-204ENST00000300862 HRES1P13985 223 aa7.53□□□□□ -1.2
HIF3A-204ENST00000300862 Q5W150 140 aa7.52□□□□□ -1.21
HIF3A-204ENST00000300862 KRTAP10-1P60331 282 aa7.51□□□□□ -1.21
HIF3A-204ENST00000300862 LINC01554Q52M75 96 aa7.51□□□□□ -1.21
HIF3A-204ENST00000300862 SPINK7P58062 85 aa7.49□□□□□ -1.21
HIF3A-204ENST00000300862 SSBP3-AS1Q7Z2R9 100 aa7.48□□□□□ -1.21
HIF3A-204ENST00000300862 KRTAP13-2Q52LG2 175 aa7.48□□□□□ -1.21
HIF3A-204ENST00000300862 PKD1P98161 4303 aa7.46□□□□□ -1.21
HIF3A-204ENST00000300862 RETNLBQ9BQ08 111 aa7.46□□□□□ -1.22
HIF3A-204ENST00000300862 FAT2Q9NYQ8 4349 aa7.45□□□□□ -1.22
HIF3A-204ENST00000300862 A0A0A0MQY5 61 aa7.44□□□□□ -1.22
HIF3A-204ENST00000300862 VPS13BQ7Z7G8 4022 aa7.44□□□□□ -1.22
HIF3A-204ENST00000300862 Q6ZSA8 131 aa7.43□□□□□ -1.22
HIF3A-204ENST00000300862 KRTAP13-3Q3SY46 172 aa7.43□□□□□ -1.22
HIF3A-204ENST00000300862 KRTAP1-4P0C5Y4 121 aa7.38□□□□□ -1.23
HIF3A-204ENST00000300862 PKHD1P08F94 4074 aa7.37□□□□□ -1.23
HIF3A-204ENST00000300862 PLA2G1BP04054 148 aaKnown RBP7.34□□□□□ -1.23
HIF3A-204ENST00000300862 FAM229AH3BQW9 127 aa7.31□□□□□ -1.24
HIF3A-204ENST00000300862 KRTAP16-1A8MUX0 517 aa7.3□□□□□ -1.24
HIF3A-204ENST00000300862 ACYP2P14621 99 aa7.3□□□□□ -1.24
HIF3A-204ENST00000300862 TYMSOSQ8TAI1 123 aa7.29□□□□□ -1.24
HIF3A-204ENST00000300862 DMAC1Q96GE9 116 aa7.28□□□□□ -1.24
HIF3A-204ENST00000300862 IGKV2-30P06310 120 aa7.27□□□□□ -1.25
HIF3A-204ENST00000300862 PRAC1Q96KF2 57 aa7.27□□□□□ -1.25
HIF3A-204ENST00000300862 IGKV2D-30A0A075B6S6 120 aa7.26□□□□□ -1.25
HIF3A-204ENST00000300862 SMR3BP02814 79 aaPredicted RBP7.25□□□□□ -1.25
HIF3A-204ENST00000300862 SACSQ9NZJ4 4579 aa7.24□□□□□ -1.25
HIF3A-204ENST00000300862 ADM2Q7Z4H4 148 aa7.22□□□□□ -1.25
HIF3A-204ENST00000300862 SPINK1P00995 79 aa7.21□□□□□ -1.26
HIF3A-204ENST00000300862 A0A1B0GU69 56 aa7.2□□□□□ -1.26
HIF3A-204ENST00000300862 FAT1Q14517 4588 aa7.2□□□□□ -1.26
HIF3A-204ENST00000300862 DYNC1H1Q14204 4646 aaKnown RBP7.19□□□□□ -1.26
HIF3A-204ENST00000300862 SPATA8Q6RVD6 105 aa7.17□□□□□ -1.26
HIF3A-204ENST00000300862 LINC00304Q8N9R0 145 aa7.17□□□□□ -1.26
HIF3A-204ENST00000300862 MIR22HGQ0VDD5 57 aa7.12□□□□□ -1.27
HIF3A-204ENST00000300862 C9orf92A6NGG3 77 aa7.11□□□□□ -1.27
HIF3A-204ENST00000300862 Q8N1X5 172 aa7.1□□□□□ -1.27
HIF3A-204ENST00000300862 UQCR11O14957 56 aa7.1□□□□□ -1.27
HIF3A-204ENST00000300862 APOBP04114 4563 aaKnown RBP7.08□□□□□ -1.28
HIF3A-204ENST00000300862 A0A1B0GVY2 172 aa7.05□□□□□ -1.28
HIF3A-204ENST00000300862 KRTAP10-4P60372 401 aaPredicted RBP7.04□□□□□ -1.28
HIF3A-204ENST00000300862 RPS29P62273 56 aaKnown RBP7.04□□□□□ -1.28
HIF3A-204ENST00000300862 KMT2CQ8NEZ4 4911 aaKnown RBP7.01□□□□□ -1.29
HIF3A-204ENST00000300862 PKHD1L1Q86WI1 4243 aa7.01□□□□□ -1.29
HIF3A-204ENST00000300862 RYR2Q92736 4967 aa7□□□□□ -1.29
HIF3A-204ENST00000300862 ROMO1P60602 79 aa6.98□□□□□ -1.29
HIF3A-204ENST00000300862 CSAG1Q6PB30 78 aa6.98□□□□□ -1.29
HIF3A-204ENST00000300862 FLG2Q5D862 2391 aaPredicted RBP6.96□□□□□ -1.29
HIF3A-204ENST00000300862 A8MUU9 505 aa6.96□□□□□ -1.29
HIF3A-204ENST00000300862 C20orf166-AS1Q96NR2 134 aa6.96□□□□□ -1.3
HIF3A-204ENST00000300862 LRP1Q07954 4544 aaKnown RBP6.94□□□□□ -1.3
HIF3A-204ENST00000300862 KRTAP3-1Q9BYR8 98 aa6.91□□□□□ -1.3
HIF3A-204ENST00000300862 DMBT1Q9UGM3 2413 aaPredicted RBP6.9□□□□□ -1.31
HIF3A-204ENST00000300862 H0YAA0 97 aa6.88□□□□□ -1.31
HIF3A-204ENST00000300862 TNXBP22105 4242 aa6.82□□□□□ -1.32
HIF3A-204ENST00000300862 FAT3Q8TDW7 4589 aa6.82□□□□□ -1.32
HIF3A-204ENST00000300862 MYCBP2O75592 4640 aa6.82□□□□□ -1.32
HIF3A-204ENST00000300862 HSPG2P98160 4391 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms