RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PRLHP81277 87 aa6.31□□□□□ -1.4
UPF3B-201ENST00000276201 PLAC8Q9NZF1 115 aa6.31□□□□□ -1.4
UPF3B-201ENST00000276201 CHKB-CPT1BH3BT56 60 aa6.3□□□□□ -1.4
UPF3B-201ENST00000276201 DNAH5Q8TE73 4624 aa6.3□□□□□ -1.4
UPF3B-201ENST00000276201 MOBPQ13875 183 aa6.3□□□□□ -1.4
UPF3B-201ENST00000276201 COA5Q86WW8 74 aa6.3□□□□□ -1.4
UPF3B-201ENST00000276201 LRP1BQ9NZR2 4599 aa6.29□□□□□ -1.4
UPF3B-201ENST00000276201 IGLV5-52A0A0A0MRZ9 124 aa6.29□□□□□ -1.4
UPF3B-201ENST00000276201 KRTAP10-1P60331 282 aa6.29□□□□□ -1.4
UPF3B-201ENST00000276201 PRR15LQ9BU68 103 aa6.29□□□□□ -1.4
UPF3B-201ENST00000276201 LINC01558Q9Y6Z2 57 aa6.29□□□□□ -1.4
UPF3B-201ENST00000276201 HERC2O95714 4834 aa6.29□□□□□ -1.4
UPF3B-201ENST00000276201 C14orf177Q52M58 125 aa6.29□□□□□ -1.4
UPF3B-201ENST00000276201 CDK2AP2O75956 126 aa6.28□□□□□ -1.4
UPF3B-201ENST00000276201 KTN1-AS1Q86SY8 53 aa6.28□□□□□ -1.4
UPF3B-201ENST00000276201 NDUFS5O43920 106 aa6.28□□□□□ -1.4
UPF3B-201ENST00000276201 CDC42SE1Q9NRR8 79 aa6.27□□□□□ -1.41
UPF3B-201ENST00000276201 RYR1P21817 5038 aa6.27□□□□□ -1.41
UPF3B-201ENST00000276201 LCA10Q71F78 164 aa6.25□□□□□ -1.41
UPF3B-201ENST00000276201 PHF5AQ7RTV0 110 aaKnown RBP6.25□□□□□ -1.41
UPF3B-201ENST00000276201 KRTAP13-1Q8IUC0 172 aa6.25□□□□□ -1.41
UPF3B-201ENST00000276201 Q96NJ1 140 aa6.25□□□□□ -1.41
UPF3B-201ENST00000276201 KRTAP17-1Q9BYP8 105 aa6.25□□□□□ -1.41
UPF3B-201ENST00000276201 A6NN06 94 aa6.24□□□□□ -1.41
UPF3B-201ENST00000276201 APOBP04114 4563 aaKnown RBP6.23□□□□□ -1.41
UPF3B-201ENST00000276201 HSPG2P98160 4391 aa6.23□□□□□ -1.41
UPF3B-201ENST00000276201 A8MU10 97 aa6.23□□□□□ -1.41
UPF3B-201ENST00000276201 IGKV2-24A0A0C4DH68 120 aa6.22□□□□□ -1.41
UPF3B-201ENST00000276201 KRTAP11-1Q8IUC1 163 aa6.22□□□□□ -1.41
UPF3B-201ENST00000276201 C8orf17Q9NRJ1 99 aa6.22□□□□□ -1.41
UPF3B-201ENST00000276201 A6NED7 52 aa6.21□□□□□ -1.42
UPF3B-201ENST00000276201 LINC00483Q53H64 154 aa6.21□□□□□ -1.42
UPF3B-201ENST00000276201 Q6ZSA8 131 aa6.21□□□□□ -1.42
UPF3B-201ENST00000276201 KRTAP4-5Q9BYR2 181 aa6.19□□□□□ -1.42
UPF3B-201ENST00000276201 A0A1B0GVX0 72 aa6.18□□□□□ -1.42
UPF3B-201ENST00000276201 Q8N1X5 172 aa6.18□□□□□ -1.42
UPF3B-201ENST00000276201 HRES1P13985 223 aa6.16□□□□□ -1.42
UPF3B-201ENST00000276201 MRPL34Q9BQ48 92 aaKnown RBP6.16□□□□□ -1.42
UPF3B-201ENST00000276201 DNAH8Q96JB1 4490 aa6.16□□□□□ -1.42
UPF3B-201ENST00000276201 SMR3BP02814 79 aaPredicted RBP6.16□□□□□ -1.42
UPF3B-201ENST00000276201 PCOTHQ58A44 107 aa6.15□□□□□ -1.42
UPF3B-201ENST00000276201 ZNF706Q9Y5V0 76 aaPredicted RBP6.15□□□□□ -1.42
UPF3B-201ENST00000276201 PANO1I0J062 215 aa6.15□□□□□ -1.43
UPF3B-201ENST00000276201 J3QL48 77 aa6.15□□□□□ -1.43
UPF3B-201ENST00000276201 CHTF8P0CG12 524 aa6.15□□□□□ -1.43
UPF3B-201ENST00000276201 C7orf65Q6ZTY9 151 aa6.15□□□□□ -1.43
UPF3B-201ENST00000276201 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.15□□□□□ -1.43
UPF3B-201ENST00000276201 SPTSSBQ8NFR3 76 aa6.14□□□□□ -1.43
UPF3B-201ENST00000276201 RBM12B-AS1Q9P1G2 102 aa6.14□□□□□ -1.43
UPF3B-201ENST00000276201 CIRBP-AS1Q8TBR5 109 aa6.14□□□□□ -1.43
UPF3B-201ENST00000276201 PCLOQ9Y6V0 5065 aa6.13□□□□□ -1.43
UPF3B-201ENST00000276201 ABCA13Q86UQ4 5058 aa6.13□□□□□ -1.43
UPF3B-201ENST00000276201 Q5VSD8 79 aa6.13□□□□□ -1.43
UPF3B-201ENST00000276201 SPAG11AQ6PDA7 123 aa6.12□□□□□ -1.43
UPF3B-201ENST00000276201 KRTAP13-3Q3SY46 172 aa6.11□□□□□ -1.43
UPF3B-201ENST00000276201 A0A087X002 238 aa6.1□□□□□ -1.43
UPF3B-201ENST00000276201 SPACA4Q8TDM5 124 aa6.1□□□□□ -1.43
UPF3B-201ENST00000276201 VPS13BQ7Z7G8 4022 aa6.09□□□□□ -1.43
UPF3B-201ENST00000276201 FAM229AH3BQW9 127 aa6.09□□□□□ -1.43
UPF3B-201ENST00000276201 FAT1Q14517 4588 aa6.09□□□□□ -1.43
UPF3B-201ENST00000276201 IGHV6-1A0A0B4J1U7 121 aa6.08□□□□□ -1.44
UPF3B-201ENST00000276201 SPINK7P58062 85 aa6.08□□□□□ -1.44
UPF3B-201ENST00000276201 SRRM2Q9UQ35 2752 aaKnown RBP6.08□□□□□ -1.44
UPF3B-201ENST00000276201 IGLV9-49A0A0B4J1Y8 123 aa6.07□□□□□ -1.44
UPF3B-201ENST00000276201 ACYP2P14621 99 aa6.06□□□□□ -1.44
UPF3B-201ENST00000276201 C8orf87E5RJ46 101 aa6.06□□□□□ -1.44
UPF3B-201ENST00000276201 KRTAP10-4P60372 401 aaPredicted RBP6.06□□□□□ -1.44
UPF3B-201ENST00000276201 PLA2G1BP04054 148 aaKnown RBP6.05□□□□□ -1.44
UPF3B-201ENST00000276201 DMAC1Q96GE9 116 aa6.04□□□□□ -1.44
UPF3B-201ENST00000276201 FLG2Q5D862 2391 aaPredicted RBP6.03□□□□□ -1.44
UPF3B-201ENST00000276201 PRR26Q8N8Z3 221 aa6.02□□□□□ -1.45
UPF3B-201ENST00000276201 NOTCH2NLQ7Z3S9 236 aa6.02□□□□□ -1.45
UPF3B-201ENST00000276201 ZNF861PO60384 105 aa6.01□□□□□ -1.45
UPF3B-201ENST00000276201 Q5W150 140 aa6.01□□□□□ -1.45
UPF3B-201ENST00000276201 LCE2DQ5TA82 110 aaPredicted RBP6□□□□□ -1.45
UPF3B-201ENST00000276201 SPATA8Q6RVD6 105 aa5.98□□□□□ -1.45
UPF3B-201ENST00000276201 PSORS1C2Q9UIG4 136 aa5.98□□□□□ -1.45
UPF3B-201ENST00000276201 MYCBP2O75592 4640 aa5.97□□□□□ -1.45
UPF3B-201ENST00000276201 SSBP3-AS1Q7Z2R9 100 aa5.96□□□□□ -1.45
UPF3B-201ENST00000276201 IGKV2-30P06310 120 aa5.94□□□□□ -1.46
UPF3B-201ENST00000276201 PKHD1L1Q86WI1 4243 aa5.94□□□□□ -1.46
UPF3B-201ENST00000276201 DMBT1Q9UGM3 2413 aaPredicted RBP5.94□□□□□ -1.46
UPF3B-201ENST00000276201 LINC00313P59037 77 aa5.93□□□□□ -1.46
UPF3B-201ENST00000276201 KRTAP3-3Q9BYR6 98 aa5.93□□□□□ -1.46
UPF3B-201ENST00000276201 KRTAP3-2Q9BYR7 98 aa5.93□□□□□ -1.46
UPF3B-201ENST00000276201 A0A1B0GU69 56 aa5.92□□□□□ -1.46
UPF3B-201ENST00000276201 IGLV7-43P04211 117 aa5.9□□□□□ -1.46
UPF3B-201ENST00000276201 ANAPC11Q9NYG5 84 aa5.88□□□□□ -1.47
UPF3B-201ENST00000276201 LRP1Q07954 4544 aaKnown RBP5.88□□□□□ -1.47
UPF3B-201ENST00000276201 UQCR11O14957 56 aa5.88□□□□□ -1.47
UPF3B-201ENST00000276201 SPINK6Q6UWN8 80 aa5.88□□□□□ -1.47
UPF3B-201ENST00000276201 MIR22HGQ0VDD5 57 aa5.86□□□□□ -1.47
UPF3B-201ENST00000276201 KRTAP16-1A8MUX0 517 aa5.86□□□□□ -1.47
UPF3B-201ENST00000276201 FAT3Q8TDW7 4589 aa5.85□□□□□ -1.47
UPF3B-201ENST00000276201 MT1HL1P0DM35 61 aa5.84□□□□□ -1.48
UPF3B-201ENST00000276201 HERC1Q15751 4861 aa5.83□□□□□ -1.48
UPF3B-201ENST00000276201 IGKV2D-30A0A075B6S6 120 aa5.82□□□□□ -1.48
UPF3B-201ENST00000276201 LINC01554Q52M75 96 aa5.82□□□□□ -1.48
UPF3B-201ENST00000276201 PRAC1Q96KF2 57 aa5.81□□□□□ -1.48
UPF3B-201ENST00000276201 RETNLBQ9BQ08 111 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms