RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 KRTAP1-5Q9BYS1 174 aa4.76□□□□□ -1.65
USP3-201ENST00000268049 ZCCHC13Q8WW36 166 aaKnown RBP4.76□□□□□ -1.65
USP3-201ENST00000268049 FBN2P35556 2912 aa4.76□□□□□ -1.65
USP3-201ENST00000268049 MMP24-AS1A0A0U1RRL7 71 aa4.75□□□□□ -1.65
USP3-201ENST00000268049 ROMO1P60602 79 aa4.74□□□□□ -1.65
USP3-201ENST00000268049 DCHS2Q6V1P9 2916 aa4.74□□□□□ -1.65
USP3-201ENST00000268049 PDZD2O15018 2839 aa4.74□□□□□ -1.65
USP3-201ENST00000268049 STAB2Q8WWQ8 2551 aa4.73□□□□□ -1.65
USP3-201ENST00000268049 ASPMQ8IZT6 3477 aa4.73□□□□□ -1.65
USP3-201ENST00000268049 MXRA5Q9NR99 2828 aa4.72□□□□□ -1.65
USP3-201ENST00000268049 R4GN34 69 aa4.71□□□□□ -1.66
USP3-201ENST00000268049 NF1P21359 2839 aa4.7□□□□□ -1.66
USP3-201ENST00000268049 RPS29P62273 56 aaKnown RBP4.7□□□□□ -1.66
USP3-201ENST00000268049 KRTAP25-1Q3LHN0 102 aa4.68□□□□□ -1.66
USP3-201ENST00000268049 OTOGQ6ZRI0 2925 aa4.68□□□□□ -1.66
USP3-201ENST00000268049 RPL37P61927 97 aaKnown RBP4.68□□□□□ -1.66
USP3-201ENST00000268049 SPATA8Q6RVD6 105 aa4.67□□□□□ -1.66
USP3-201ENST00000268049 NDUFAF8A1L188 74 aa4.66□□□□□ -1.66
USP3-201ENST00000268049 Q5W150 140 aa4.65□□□□□ -1.66
USP3-201ENST00000268049 WDFY3Q8IZQ1 3526 aa4.65□□□□□ -1.66
USP3-201ENST00000268049 ADM2Q7Z4H4 148 aa4.65□□□□□ -1.67
USP3-201ENST00000268049 KRTAP26-1Q6PEX3 210 aa4.65□□□□□ -1.67
USP3-201ENST00000268049 LINC00472Q9H8W2 130 aa4.64□□□□□ -1.67
USP3-201ENST00000268049 Q8NDZ9 215 aa4.63□□□□□ -1.67
USP3-201ENST00000268049 SMG1Q96Q15 3661 aaKnown RBP4.63□□□□□ -1.67
USP3-201ENST00000268049 NBPF19A0A087WUL8 3843 aa4.63□□□□□ -1.67
USP3-201ENST00000268049 H1FX-AS1Q4G0G2 97 aa4.62□□□□□ -1.67
USP3-201ENST00000268049 SPRR1BP22528 89 aa4.62□□□□□ -1.67
USP3-201ENST00000268049 ZFHX4Q86UP3 3567 aa4.61□□□□□ -1.67
USP3-201ENST00000268049 A8MU10 97 aa4.6□□□□□ -1.67
USP3-201ENST00000268049 Q6ZRN7 208 aaPredicted RBP4.6□□□□□ -1.67
USP3-201ENST00000268049 SPRR1AP35321 89 aa4.59□□□□□ -1.67
USP3-201ENST00000268049 C20orf166-AS1Q96NR2 134 aa4.57□□□□□ -1.68
USP3-201ENST00000268049 A0A087X002 238 aa4.56□□□□□ -1.68
USP3-201ENST00000268049 KRTAP29-1A8MX34 341 aaPredicted RBP4.56□□□□□ -1.68
USP3-201ENST00000268049 M0QZ58 72 aa4.56□□□□□ -1.68
USP3-201ENST00000268049 ZFHX3Q15911 3703 aa4.55□□□□□ -1.68
USP3-201ENST00000268049 PANO1I0J062 215 aa4.54□□□□□ -1.68
USP3-201ENST00000268049 TENM1Q9UKZ4 2725 aa4.52□□□□□ -1.69
USP3-201ENST00000268049 FLG2Q5D862 2391 aaPredicted RBP4.51□□□□□ -1.69
USP3-201ENST00000268049 A8MUU9 505 aa4.48□□□□□ -1.69
USP3-201ENST00000268049 TENM2Q9NT68 2774 aa4.48□□□□□ -1.69
USP3-201ENST00000268049 CELSR1Q9NYQ6 3014 aa4.47□□□□□ -1.69
USP3-201ENST00000268049 FBN1P35555 2871 aaKnown RBP4.47□□□□□ -1.69
USP3-201ENST00000268049 CSMD1Q96PZ7 3565 aa4.46□□□□□ -1.7
USP3-201ENST00000268049 TENM3Q9P273 2699 aa4.45□□□□□ -1.7
USP3-201ENST00000268049 BSNQ9UPA5 3926 aa4.44□□□□□ -1.7
USP3-201ENST00000268049 DMBT1Q9UGM3 2413 aaPredicted RBP4.44□□□□□ -1.7
USP3-201ENST00000268049 TPRXLQ17RH7 258 aa4.44□□□□□ -1.7
USP3-201ENST00000268049 PRO2289Q9P1D8 64 aa4.44□□□□□ -1.7
USP3-201ENST00000268049 SPENQ96T58 3664 aaKnown RBP4.43□□□□□ -1.7
USP3-201ENST00000268049 KRTAP11-1Q8IUC1 163 aa4.42□□□□□ -1.7
USP3-201ENST00000268049 ANK3Q12955 4377 aaKnown RBP4.41□□□□□ -1.7
USP3-201ENST00000268049 VWFP04275 2813 aa4.41□□□□□ -1.7
USP3-201ENST00000268049 PKD1L1Q8TDX9 2849 aa4.41□□□□□ -1.7
USP3-201ENST00000268049 CSMD2Q7Z408 3487 aa4.4□□□□□ -1.71
USP3-201ENST00000268049 KRTAP4-16G5E9R7 235 aaPredicted RBP4.39□□□□□ -1.71
USP3-201ENST00000268049 TGP01266 2768 aa4.37□□□□□ -1.71
USP3-201ENST00000268049 KRTAP10-10P60014 251 aa4.36□□□□□ -1.71
USP3-201ENST00000268049 KRTAP7-1Q8IUC3 87 aa4.36□□□□□ -1.71
USP3-201ENST00000268049 NOTCH2NLQ7Z3S9 236 aa4.35□□□□□ -1.71
USP3-201ENST00000268049 A0A1B0GVY2 172 aa4.32□□□□□ -1.72
USP3-201ENST00000268049 FBN3Q75N90 2809 aa4.31□□□□□ -1.72
USP3-201ENST00000268049 KRTAP13-2Q52LG2 175 aa4.3□□□□□ -1.72
USP3-201ENST00000268049 KRTAP13-1Q8IUC0 172 aa4.3□□□□□ -1.72
USP3-201ENST00000268049 C10orf95Q9H7T3 257 aa4.3□□□□□ -1.72
USP3-201ENST00000268049 XP32Q5T750 250 aa4.27□□□□□ -1.73
USP3-201ENST00000268049 TNP1P09430 55 aa4.26□□□□□ -1.73
USP3-201ENST00000268049 SVEP1Q4LDE5 3571 aa4.25□□□□□ -1.73
USP3-201ENST00000268049 TRRAPQ9Y4A5 3859 aa4.24□□□□□ -1.73
USP3-201ENST00000268049 P0C880 135 aa4.24□□□□□ -1.73
USP3-201ENST00000268049 KRTAP10-8P60410 259 aa4.24□□□□□ -1.73
USP3-201ENST00000268049 KRTAP1-4P0C5Y4 121 aa4.2□□□□□ -1.74
USP3-201ENST00000268049 PP632Q6XCG6 107 aa4.19□□□□□ -1.74
USP3-201ENST00000268049 H0YAA0 97 aa4.19□□□□□ -1.74
USP3-201ENST00000268049 AKAP9Q99996 3911 aa4.17□□□□□ -1.74
USP3-201ENST00000268049 KRTAP13-3Q3SY46 172 aa4.15□□□□□ -1.75
USP3-201ENST00000268049 ZNF469Q96JG9 3925 aaPredicted RBP4.13□□□□□ -1.75
USP3-201ENST00000268049 MEGF8Q7Z7M0 2845 aa4.09□□□□□ -1.76
USP3-201ENST00000268049 VPS13CQ709C8 3753 aa4.07□□□□□ -1.76
USP3-201ENST00000268049 COL7A1Q02388 2944 aa4.06□□□□□ -1.76
USP3-201ENST00000268049 CUBNO60494 3623 aa4.04□□□□□ -1.76
USP3-201ENST00000268049 HUWE1Q7Z6Z7 4374 aaKnown RBP4.03□□□□□ -1.76
USP3-201ENST00000268049 SRRM2Q9UQ35 2752 aaKnown RBP4.02□□□□□ -1.77
USP3-201ENST00000268049 DNHD1Q96M86 4753 aa4.01□□□□□ -1.77
USP3-201ENST00000268049 DNAH9Q9NYC9 4486 aa3.96□□□□□ -1.78
USP3-201ENST00000268049 KRTAP4-5Q9BYR2 181 aa3.94□□□□□ -1.78
USP3-201ENST00000268049 ALMS1Q8TCU4 4167 aa3.93□□□□□ -1.78
USP3-201ENST00000268049 MT1HL1P0DM35 61 aa3.9□□□□□ -1.79
USP3-201ENST00000268049 KRTAP10-4P60372 401 aaPredicted RBP3.87□□□□□ -1.79
USP3-201ENST00000268049 ANK2Q01484 3957 aa3.85□□□□□ -1.79
USP3-201ENST00000268049 KRTAP12-2P59991 146 aa3.85□□□□□ -1.79
USP3-201ENST00000268049 KRTAP15-1Q3LI76 137 aa3.81□□□□□ -1.8
USP3-201ENST00000268049 INE1O15225 51 aa3.8□□□□□ -1.8
USP3-201ENST00000268049 PRKDCP78527 4128 aaKnown RBP3.79□□□□□ -1.8
USP3-201ENST00000268049 KRTAP13-4Q3LI77 160 aa3.78□□□□□ -1.8
USP3-201ENST00000268049 PLECQ15149 4684 aaKnown RBP3.78□□□□□ -1.8
USP3-201ENST00000268049 KRTAP12-1P59990 96 aa3.76□□□□□ -1.81
USP3-201ENST00000268049 DNAH5Q8TE73 4624 aa3.75□□□□□ -1.81
USP3-201ENST00000268049 DNAH11Q96DT5 4516 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms