RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 K7EQZ3 153 aa13.13□□□□□ -0.31
SIX3-201ENST00000260653 C8orf87E5RJ46 101 aa13.13□□□□□ -0.31
SIX3-201ENST00000260653 KRTAP10-4P60372 401 aaPredicted RBP13.13□□□□□ -0.31
SIX3-201ENST00000260653 PRR26Q8N8Z3 221 aa13.13□□□□□ -0.31
SIX3-201ENST00000260653 PLA2G1BP04054 148 aaKnown RBP13.1□□□□□ -0.31
SIX3-201ENST00000260653 Q96NJ1 140 aa13.08□□□□□ -0.32
SIX3-201ENST00000260653 SNURFQ9Y675 71 aa13.03□□□□□ -0.32
SIX3-201ENST00000260653 HSPG2P98160 4391 aa13.02□□□□□ -0.32
SIX3-201ENST00000260653 TRAV7A0A075B6U4 112 aa13.02□□□□□ -0.33
SIX3-201ENST00000260653 NDUFC1O43677 76 aa13.01□□□□□ -0.33
SIX3-201ENST00000260653 A8MWP4 228 aa13□□□□□ -0.33
SIX3-201ENST00000260653 TYMSOSQ8TAI1 123 aa12.98□□□□□ -0.33
SIX3-201ENST00000260653 CDK2AP2O75956 126 aa12.97□□□□□ -0.33
SIX3-201ENST00000260653 RYR1P21817 5038 aa12.95□□□□□ -0.34
SIX3-201ENST00000260653 HCG22E2RYF7 251 aa12.94□□□□□ -0.34
SIX3-201ENST00000260653 FAM229AH3BQW9 127 aa12.93□□□□□ -0.34
SIX3-201ENST00000260653 EPPK1P58107 5090 aaKnown RBP12.92□□□□□ -0.34
SIX3-201ENST00000260653 WFDC13Q8IUB5 93 aa12.91□□□□□ -0.34
SIX3-201ENST00000260653 NDUFS5O43920 106 aa12.9□□□□□ -0.34
SIX3-201ENST00000260653 NDUFB1O75438 58 aa12.9□□□□□ -0.34
SIX3-201ENST00000260653 Q5VSD8 79 aa12.89□□□□□ -0.35
SIX3-201ENST00000260653 KIAA1109Q2LD37 5005 aa12.87□□□□□ -0.35
SIX3-201ENST00000260653 PKHD1L1Q86WI1 4243 aa12.87□□□□□ -0.35
SIX3-201ENST00000260653 ASB16-AS1Q495Z4 193 aa12.87□□□□□ -0.35
SIX3-201ENST00000260653 Q1T7F1 81 aa12.86□□□□□ -0.35
SIX3-201ENST00000260653 OCR1Q9BZK8 76 aa12.85□□□□□ -0.35
SIX3-201ENST00000260653 KRTAP29-1A8MX34 341 aaPredicted RBP12.84□□□□□ -0.35
SIX3-201ENST00000260653 IGHV6-1A0A0B4J1U7 121 aa12.83□□□□□ -0.36
SIX3-201ENST00000260653 MMP24-AS1A0A0U1RRL7 71 aa12.83□□□□□ -0.36
SIX3-201ENST00000260653 A0A1B0GVX0 72 aa12.83□□□□□ -0.36
SIX3-201ENST00000260653 KRTAP17-1Q9BYP8 105 aa12.83□□□□□ -0.36
SIX3-201ENST00000260653 CASC2Q6XLA1 102 aa12.83□□□□□ -0.36
SIX3-201ENST00000260653 LINC00304Q8N9R0 145 aa12.83□□□□□ -0.36
SIX3-201ENST00000260653 LIMD2Q9BT23 127 aa12.82□□□□□ -0.36
SIX3-201ENST00000260653 SPINK1P00995 79 aa12.81□□□□□ -0.36
SIX3-201ENST00000260653 A8MUN3 132 aa12.79□□□□□ -0.36
SIX3-201ENST00000260653 C8orf17Q9NRJ1 99 aa12.78□□□□□ -0.36
SIX3-201ENST00000260653 A8MU10 97 aa12.78□□□□□ -0.36
SIX3-201ENST00000260653 PSPHP1O15172 72 aa12.77□□□□□ -0.37
SIX3-201ENST00000260653 NOTCH2NLQ7Z3S9 236 aa12.76□□□□□ -0.37
SIX3-201ENST00000260653 hDV103S1A0JD37 113 aa12.76□□□□□ -0.37
SIX3-201ENST00000260653 LRP1Q07954 4544 aaKnown RBP12.74□□□□□ -0.37
SIX3-201ENST00000260653 SPAG11AQ6PDA7 123 aa12.73□□□□□ -0.37
SIX3-201ENST00000260653 LCA10Q71F78 164 aa12.72□□□□□ -0.37
SIX3-201ENST00000260653 RPS29P62273 56 aaKnown RBP12.69□□□□□ -0.38
SIX3-201ENST00000260653 TRAV22A0A0B4J277 110 aa12.68□□□□□ -0.38
SIX3-201ENST00000260653 FLG2Q5D862 2391 aaPredicted RBP12.68□□□□□ -0.38
SIX3-201ENST00000260653 C7orf65Q6ZTY9 151 aa12.66□□□□□ -0.38
SIX3-201ENST00000260653 Q8N1X5 172 aa12.66□□□□□ -0.38
SIX3-201ENST00000260653 A6NN06 94 aa12.66□□□□□ -0.38
SIX3-201ENST00000260653 TMEM254Q8TBM7 123 aa12.65□□□□□ -0.38
SIX3-201ENST00000260653 TNXBP22105 4242 aa12.64□□□□□ -0.39
SIX3-201ENST00000260653 SPTSSBQ8NFR3 76 aa12.64□□□□□ -0.39
SIX3-201ENST00000260653 ATP11AUNQ6ZP68 121 aa12.61□□□□□ -0.39
SIX3-201ENST00000260653 MRPL34Q9BQ48 92 aaKnown RBP12.61□□□□□ -0.39
SIX3-201ENST00000260653 FAT3Q8TDW7 4589 aa12.59□□□□□ -0.39
SIX3-201ENST00000260653 LINC00313P59037 77 aa12.58□□□□□ -0.4
SIX3-201ENST00000260653 KRTAP10-8P60410 259 aa12.57□□□□□ -0.4
SIX3-201ENST00000260653 MYCBP2O75592 4640 aa12.57□□□□□ -0.4
SIX3-201ENST00000260653 Q5VV11 94 aa12.53□□□□□ -0.4
SIX3-201ENST00000260653 RETNLBQ9BQ08 111 aa12.51□□□□□ -0.41
SIX3-201ENST00000260653 TP53AIP1Q9HCN2 124 aa12.5□□□□□ -0.41
SIX3-201ENST00000260653 H0Y9P7 68 aa12.5□□□□□ -0.41
SIX3-201ENST00000260653 C1orf64Q8NEQ6 169 aa12.49□□□□□ -0.41
SIX3-201ENST00000260653 MP68P56378 58 aa12.48□□□□□ -0.41
SIX3-201ENST00000260653 DMBT1Q9UGM3 2413 aaPredicted RBP12.47□□□□□ -0.41
SIX3-201ENST00000260653 KRTAP16-1A8MUX0 517 aa12.47□□□□□ -0.41
SIX3-201ENST00000260653 ZCCHC13Q8WW36 166 aaKnown RBP12.46□□□□□ -0.41
SIX3-201ENST00000260653 CHKB-CPT1BH3BT56 60 aa12.45□□□□□ -0.42
SIX3-201ENST00000260653 LINC00208Q96KT6 92 aa12.45□□□□□ -0.42
SIX3-201ENST00000260653 LINC01554Q52M75 96 aa12.44□□□□□ -0.42
SIX3-201ENST00000260653 KRTAP4-5Q9BYR2 181 aa12.43□□□□□ -0.42
SIX3-201ENST00000260653 Q8N9P0 234 aaPredicted RBP12.42□□□□□ -0.42
SIX3-201ENST00000260653 MT1HL1P0DM35 61 aa12.41□□□□□ -0.42
SIX3-201ENST00000260653 Q5W150 140 aa12.38□□□□□ -0.43
SIX3-201ENST00000260653 H3BPC8 53 aa12.37□□□□□ -0.43
SIX3-201ENST00000260653 C9orf92A6NGG3 77 aa12.35□□□□□ -0.43
SIX3-201ENST00000260653 KRTAP13-3Q3SY46 172 aa12.33□□□□□ -0.44
SIX3-201ENST00000260653 A0A0A0MQY5 61 aa12.31□□□□□ -0.44
SIX3-201ENST00000260653 BIRC6Q9NR09 4857 aa12.3□□□□□ -0.44
SIX3-201ENST00000260653 CYP4F30PQ9H0H9 118 aa12.28□□□□□ -0.44
SIX3-201ENST00000260653 A6NED7 52 aa12.25□□□□□ -0.45
SIX3-201ENST00000260653 CDC42SE1Q9NRR8 79 aa12.25□□□□□ -0.45
SIX3-201ENST00000260653 ABCA13Q86UQ4 5058 aa12.24□□□□□ -0.45
SIX3-201ENST00000260653 PRR15LQ9BU68 103 aa12.22□□□□□ -0.45
SIX3-201ENST00000260653 PRAC1Q96KF2 57 aa12.21□□□□□ -0.45
SIX3-201ENST00000260653 Q75L30 129 aa12.2□□□□□ -0.46
SIX3-201ENST00000260653 HERC2O95714 4834 aa12.2□□□□□ -0.46
SIX3-201ENST00000260653 PCOTHQ58A44 107 aa12.19□□□□□ -0.46
SIX3-201ENST00000260653 LOC101927531A0A1B0GV80 90 aa12.18□□□□□ -0.46
SIX3-201ENST00000260653 C20orf166-AS1Q96NR2 134 aa12.17□□□□□ -0.46
SIX3-201ENST00000260653 A8MUU9 505 aa12.15□□□□□ -0.46
SIX3-201ENST00000260653 PRR4Q16378 134 aa12.15□□□□□ -0.46
SIX3-201ENST00000260653 IGLV7-46A0A075B6I9 117 aa12.14□□□□□ -0.47
SIX3-201ENST00000260653 IGKV2-30P06310 120 aa12.09□□□□□ -0.47
SIX3-201ENST00000260653 SPANXA2-OT1Q8N9U9 137 aa12.08□□□□□ -0.48
SIX3-201ENST00000260653 IGKV2D-30A0A075B6S6 120 aa12.05□□□□□ -0.48
SIX3-201ENST00000260653 ADM2Q7Z4H4 148 aa12.01□□□□□ -0.49
SIX3-201ENST00000260653 XP32Q5T750 250 aa11.98□□□□□ -0.49
SIX3-201ENST00000260653 J3QL48 77 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms