RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 A0A096LPF7 62 aa4.31□□□□□ -1.72
GPNMB-201ENST00000258733 KRTAP1-3Q8IUG1 177 aa4.31□□□□□ -1.72
GPNMB-201ENST00000258733 DEFB130BP0DP73 79 aa4.3□□□□□ -1.72
GPNMB-201ENST00000258733 DEFB130AP0DP74 79 aa4.3□□□□□ -1.72
GPNMB-201ENST00000258733 SMR3AQ99954 134 aa4.3□□□□□ -1.72
GPNMB-201ENST00000258733 MAPK1IP1LQ8NDC0 245 aa4.29□□□□□ -1.72
GPNMB-201ENST00000258733 JMJD1CQ15652 2540 aa4.29□□□□□ -1.72
GPNMB-201ENST00000258733 ZNF469Q96JG9 3925 aaPredicted RBP4.29□□□□□ -1.72
GPNMB-201ENST00000258733 NBEAL1Q6ZS30 2694 aa4.29□□□□□ -1.72
GPNMB-201ENST00000258733 MXRA5Q9NR99 2828 aa4.29□□□□□ -1.72
GPNMB-201ENST00000258733 LCE2DQ5TA82 110 aaPredicted RBP4.28□□□□□ -1.72
GPNMB-201ENST00000258733 COL6A5A8TX70 2615 aa4.28□□□□□ -1.72
GPNMB-201ENST00000258733 GIG44P09565 113 aaPredicted RBP4.28□□□□□ -1.73
GPNMB-201ENST00000258733 SLURP1P55000 103 aa4.27□□□□□ -1.73
GPNMB-201ENST00000258733 KRTAP24-1Q3LI83 254 aa4.27□□□□□ -1.73
GPNMB-201ENST00000258733 STAB1Q9NY15 2570 aa4.26□□□□□ -1.73
GPNMB-201ENST00000258733 H1FX-AS1Q4G0G2 97 aa4.26□□□□□ -1.73
GPNMB-201ENST00000258733 CUBNO60494 3623 aa4.26□□□□□ -1.73
GPNMB-201ENST00000258733 CCDC168Q8NDH2 2452 aa4.25□□□□□ -1.73
GPNMB-201ENST00000258733 Q8N1X5 172 aa4.25□□□□□ -1.73
GPNMB-201ENST00000258733 MEGF8Q7Z7M0 2845 aa4.24□□□□□ -1.73
GPNMB-201ENST00000258733 SPINK1P00995 79 aa4.24□□□□□ -1.73
GPNMB-201ENST00000258733 C14orf177Q52M58 125 aa4.24□□□□□ -1.73
GPNMB-201ENST00000258733 PRO2289Q9P1D8 64 aa4.24□□□□□ -1.73
GPNMB-201ENST00000258733 SRRM2Q9UQ35 2752 aaKnown RBP4.23□□□□□ -1.73
GPNMB-201ENST00000258733 ACANP16112 2415 aa4.23□□□□□ -1.73
GPNMB-201ENST00000258733 PRO0255Q9UI72 69 aa4.23□□□□□ -1.73
GPNMB-201ENST00000258733 KRTAP23-1A1A580 65 aa4.22□□□□□ -1.73
GPNMB-201ENST00000258733 KRTAP1-1Q07627 177 aa4.22□□□□□ -1.73
GPNMB-201ENST00000258733 RYR3Q15413 4870 aa4.22□□□□□ -1.73
GPNMB-201ENST00000258733 PRLHP81277 87 aa4.22□□□□□ -1.73
GPNMB-201ENST00000258733 IGKV2-30P06310 120 aa4.21□□□□□ -1.74
GPNMB-201ENST00000258733 HIVEP2P31629 2446 aa4.2□□□□□ -1.74
GPNMB-201ENST00000258733 TLN2Q9Y4G6 2542 aa4.2□□□□□ -1.74
GPNMB-201ENST00000258733 SONP18583 2426 aaKnown RBP4.2□□□□□ -1.74
GPNMB-201ENST00000258733 SPACA4Q8TDM5 124 aa4.2□□□□□ -1.74
GPNMB-201ENST00000258733 ANK3Q12955 4377 aaKnown RBP4.19□□□□□ -1.74
GPNMB-201ENST00000258733 TYMSOSQ8TAI1 123 aa4.19□□□□□ -1.74
GPNMB-201ENST00000258733 FLNAP21333 2647 aaKnown RBP4.18□□□□□ -1.74
GPNMB-201ENST00000258733 SPRR1BP22528 89 aa4.18□□□□□ -1.74
GPNMB-201ENST00000258733 KRTAP3-3Q9BYR6 98 aa4.18□□□□□ -1.74
GPNMB-201ENST00000258733 KRTAP3-2Q9BYR7 98 aa4.18□□□□□ -1.74
GPNMB-201ENST00000258733 R4GN34 69 aa4.18□□□□□ -1.74
GPNMB-201ENST00000258733 A0A096LNI7 61 aa4.17□□□□□ -1.74
GPNMB-201ENST00000258733 IGKV2D-30A0A075B6S6 120 aa4.17□□□□□ -1.74
GPNMB-201ENST00000258733 RPL37P61927 97 aaKnown RBP4.17□□□□□ -1.74
GPNMB-201ENST00000258733 PLAC4Q8WY50 150 aa4.16□□□□□ -1.74
GPNMB-201ENST00000258733 KRTAP7-1Q8IUC3 87 aa4.15□□□□□ -1.74
GPNMB-201ENST00000258733 KMT2CQ8NEZ4 4911 aaKnown RBP4.14□□□□□ -1.75
GPNMB-201ENST00000258733 WWC2-AS2Q96NR7 200 aa4.14□□□□□ -1.75
GPNMB-201ENST00000258733 PKD1L1Q8TDX9 2849 aa4.11□□□□□ -1.75
GPNMB-201ENST00000258733 VWFP04275 2813 aa4.11□□□□□ -1.75
GPNMB-201ENST00000258733 COX6B2Q6YFQ2 88 aa4.11□□□□□ -1.75
GPNMB-201ENST00000258733 DYNC2H1Q8NCM8 4307 aaKnown RBP4.11□□□□□ -1.75
GPNMB-201ENST00000258733 CSMD3Q7Z407 3707 aa4.09□□□□□ -1.76
GPNMB-201ENST00000258733 HERC2O95714 4834 aa4.09□□□□□ -1.76
GPNMB-201ENST00000258733 TGP01266 2768 aa4.08□□□□□ -1.76
GPNMB-201ENST00000258733 PCLOQ9Y6V0 5065 aa4.08□□□□□ -1.76
GPNMB-201ENST00000258733 KRTAP10-3P60369 221 aa4.07□□□□□ -1.76
GPNMB-201ENST00000258733 MGAM2Q2M2H8 2515 aa4.06□□□□□ -1.76
GPNMB-201ENST00000258733 PRKDCP78527 4128 aaKnown RBP4.06□□□□□ -1.76
GPNMB-201ENST00000258733 H3BNG1 76 aa4.06□□□□□ -1.76
GPNMB-201ENST00000258733 EPPK1P58107 5090 aaKnown RBP4.06□□□□□ -1.76
GPNMB-201ENST00000258733 NOTCH1P46531 2555 aa4.05□□□□□ -1.76
GPNMB-201ENST00000258733 DMBT1Q9UGM3 2413 aaPredicted RBP4.05□□□□□ -1.76
GPNMB-201ENST00000258733 KRTAP10-8P60410 259 aa4.05□□□□□ -1.76
GPNMB-201ENST00000258733 Q6ZRN7 208 aaPredicted RBP4.04□□□□□ -1.76
GPNMB-201ENST00000258733 DNAH1Q9P2D7 4330 aa4.04□□□□□ -1.76
GPNMB-201ENST00000258733 RYR2Q92736 4967 aa4.03□□□□□ -1.76
GPNMB-201ENST00000258733 XP32Q5T750 250 aa4.03□□□□□ -1.76
GPNMB-201ENST00000258733 SPINK6Q6UWN8 80 aa4.02□□□□□ -1.77
GPNMB-201ENST00000258733 TRRAPQ9Y4A5 3859 aa4.02□□□□□ -1.77
GPNMB-201ENST00000258733 NBEAL2Q6ZNJ1 2754 aa4.01□□□□□ -1.77
GPNMB-201ENST00000258733 UBE2DNLQ8IWF7 75 aa4□□□□□ -1.77
GPNMB-201ENST00000258733 TENM1Q9UKZ4 2725 aa3.99□□□□□ -1.77
GPNMB-201ENST00000258733 A0A0D9SG42 100 aa3.99□□□□□ -1.77
GPNMB-201ENST00000258733 HYDINQ4G0P3 5121 aa3.99□□□□□ -1.77
GPNMB-201ENST00000258733 APLNQ9ULZ1 77 aa3.99□□□□□ -1.77
GPNMB-201ENST00000258733 CMYA5Q8N3K9 4069 aa3.99□□□□□ -1.77
GPNMB-201ENST00000258733 SPART-AS1P0CW21 52 aa3.98□□□□□ -1.77
GPNMB-201ENST00000258733 DNAH3Q8TD57 4116 aa3.98□□□□□ -1.77
GPNMB-201ENST00000258733 HTN3P15516 51 aa3.96□□□□□ -1.78
GPNMB-201ENST00000258733 DEFB135Q30KP9 77 aa3.96□□□□□ -1.78
GPNMB-201ENST00000258733 S4R3F8 94 aa3.96□□□□□ -1.78
GPNMB-201ENST00000258733 DEFB4AO15263 64 aa3.95□□□□□ -1.78
GPNMB-201ENST00000258733 LINC01556Q5JQF7 62 aa3.95□□□□□ -1.78
GPNMB-201ENST00000258733 INE1O15225 51 aa3.94□□□□□ -1.78
GPNMB-201ENST00000258733 KRTAP13-4Q3LI77 160 aa3.91□□□□□ -1.78
GPNMB-201ENST00000258733 SACSQ9NZJ4 4579 aa3.9□□□□□ -1.79
GPNMB-201ENST00000258733 KRTAP12-2P59991 146 aa3.87□□□□□ -1.79
GPNMB-201ENST00000258733 KRTAP13-1Q8IUC0 172 aa3.86□□□□□ -1.79
GPNMB-201ENST00000258733 RYR1P21817 5038 aa3.85□□□□□ -1.79
GPNMB-201ENST00000258733 KRTAP10-11P60412 298 aa3.85□□□□□ -1.79
GPNMB-201ENST00000258733 KRTAP10-6P60371 365 aaPredicted RBP3.83□□□□□ -1.8
GPNMB-201ENST00000258733 TENM3Q9P273 2699 aa3.83□□□□□ -1.8
GPNMB-201ENST00000258733 KRTAP3-1Q9BYR8 98 aa3.81□□□□□ -1.8
GPNMB-201ENST00000258733 DNAH9Q9NYC9 4486 aa3.79□□□□□ -1.8
GPNMB-201ENST00000258733 HUWE1Q7Z6Z7 4374 aaKnown RBP3.79□□□□□ -1.8
GPNMB-201ENST00000258733 KRTAP12-1P59990 96 aa3.79□□□□□ -1.8
GPNMB-201ENST00000258733 LYSTQ99698 3801 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms