RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 C9orf118A6NHY6 69 aa11.79□□□□□ -0.52
LSM4-201ENST00000252816 TAX1BP3O14907 124 aa11.79□□□□□ -0.52
LSM4-201ENST00000252816 C14orf132Q9NPU4 83 aa11.79□□□□□ -0.52
LSM4-201ENST00000252816 LORP23490 312 aaPredicted RBP11.78□□□□□ -0.52
LSM4-201ENST00000252816 KRTAP10-6P60371 365 aaPredicted RBP11.78□□□□□ -0.52
LSM4-201ENST00000252816 C8orf87E5RJ46 101 aa11.77□□□□□ -0.53
LSM4-201ENST00000252816 J3KT08 172 aa11.77□□□□□ -0.53
LSM4-201ENST00000252816 M0R2T5 61 aa11.77□□□□□ -0.53
LSM4-201ENST00000252816 LCE2DQ5TA82 110 aaPredicted RBP11.77□□□□□ -0.53
LSM4-201ENST00000252816 PDE6GP18545 87 aa11.76□□□□□ -0.53
LSM4-201ENST00000252816 A0A1B0GW54 56 aa11.74□□□□□ -0.53
LSM4-201ENST00000252816 A0A1W2PPM0 123 aa11.73□□□□□ -0.53
LSM4-201ENST00000252816 MTURNQ8N3F0 131 aa11.7□□□□□ -0.54
LSM4-201ENST00000252816 H3BT86 120 aa11.67□□□□□ -0.54
LSM4-201ENST00000252816 A8MWP4 228 aa11.66□□□□□ -0.54
LSM4-201ENST00000252816 NDUFB1O75438 58 aa11.66□□□□□ -0.54
LSM4-201ENST00000252816 IGKV3D-7A0A0C4DH55 119 aa11.64□□□□□ -0.55
LSM4-201ENST00000252816 KRTAP9-6A0A140TA67 174 aa11.63□□□□□ -0.55
LSM4-201ENST00000252816 C8orf17Q9NRJ1 99 aa11.62□□□□□ -0.55
LSM4-201ENST00000252816 NREPQ16612 68 aa11.61□□□□□ -0.55
LSM4-201ENST00000252816 HRES1P13985 223 aa11.6□□□□□ -0.55
LSM4-201ENST00000252816 Q8N9P0 234 aaPredicted RBP11.59□□□□□ -0.55
LSM4-201ENST00000252816 ZCCHC13Q8WW36 166 aaKnown RBP11.59□□□□□ -0.55
LSM4-201ENST00000252816 MPLKIPQ8TAP9 179 aa11.58□□□□□ -0.56
LSM4-201ENST00000252816 SPCS1Q9Y6A9 102 aa11.57□□□□□ -0.56
LSM4-201ENST00000252816 PRR15Q8IV56 129 aa11.56□□□□□ -0.56
LSM4-201ENST00000252816 Q6ZVQ6 151 aa11.52□□□□□ -0.57
LSM4-201ENST00000252816 FAM236DA0A1B0GTK5 79 aa11.51□□□□□ -0.57
LSM4-201ENST00000252816 FAM236CP0DP71 79 aa11.51□□□□□ -0.57
LSM4-201ENST00000252816 SMCPP49901 116 aaPredicted RBP11.51□□□□□ -0.57
LSM4-201ENST00000252816 COL5A1-AS1Q5SY13 56 aa11.5□□□□□ -0.57
LSM4-201ENST00000252816 RBM12B-AS1Q9P1G2 102 aa11.5□□□□□ -0.57
LSM4-201ENST00000252816 MMP24-AS1A0A0U1RRL7 71 aa11.47□□□□□ -0.57
LSM4-201ENST00000252816 SPINK7P58062 85 aa11.47□□□□□ -0.57
LSM4-201ENST00000252816 K7EQZ3 153 aa11.45□□□□□ -0.58
LSM4-201ENST00000252816 CRCT1Q9UGL9 99 aa11.43□□□□□ -0.58
LSM4-201ENST00000252816 PRO0461Q9UI25 63 aa11.43□□□□□ -0.58
LSM4-201ENST00000252816 FSIP2Q5CZC0 6907 aa11.43□□□□□ -0.58
LSM4-201ENST00000252816 TMEM254Q8TBM7 123 aa11.42□□□□□ -0.58
LSM4-201ENST00000252816 KRTAP9-8Q9BYQ0 159 aa11.42□□□□□ -0.58
LSM4-201ENST00000252816 BPY2O14599 106 aa11.41□□□□□ -0.58
LSM4-201ENST00000252816 MRPL34Q9BQ48 92 aaKnown RBP11.41□□□□□ -0.58
LSM4-201ENST00000252816 K7EP34 96 aa11.39□□□□□ -0.59
LSM4-201ENST00000252816 hDV103S1A0JD37 113 aa11.38□□□□□ -0.59
LSM4-201ENST00000252816 Q8N9L7 120 aa11.33□□□□□ -0.6
LSM4-201ENST00000252816 WFDC13Q8IUB5 93 aa11.3□□□□□ -0.6
LSM4-201ENST00000252816 PCP4L1A6NKN8 68 aa11.29□□□□□ -0.6
LSM4-201ENST00000252816 NDUFS5O43920 106 aa11.29□□□□□ -0.6
LSM4-201ENST00000252816 LINC00846Q9NV44 126 aa11.29□□□□□ -0.6
LSM4-201ENST00000252816 MT2AP02795 61 aa11.26□□□□□ -0.61
LSM4-201ENST00000252816 GTF2H5Q6ZYL4 71 aa11.23□□□□□ -0.61
LSM4-201ENST00000252816 Q5W150 140 aa11.22□□□□□ -0.61
LSM4-201ENST00000252816 CASC2Q6XLA1 102 aa11.22□□□□□ -0.61
LSM4-201ENST00000252816 UBL5Q9BZL1 73 aa11.22□□□□□ -0.61
LSM4-201ENST00000252816 MT1FP04733 61 aa11.18□□□□□ -0.62
LSM4-201ENST00000252816 HCG22E2RYF7 251 aa11.17□□□□□ -0.62
LSM4-201ENST00000252816 F8W1H4 67 aa11.16□□□□□ -0.62
LSM4-201ENST00000252816 IGKV2D-30A0A075B6S6 120 aa11.14□□□□□ -0.63
LSM4-201ENST00000252816 IGKV2-30P06310 120 aa11.14□□□□□ -0.63
LSM4-201ENST00000252816 ETDBQ3ZM63 59 aa11.14□□□□□ -0.63
LSM4-201ENST00000252816 C7orf65Q6ZTY9 151 aa11.1□□□□□ -0.63
LSM4-201ENST00000252816 KRTAP10-10P60014 251 aa11.09□□□□□ -0.63
LSM4-201ENST00000252816 CXCL6P80162 114 aa11.07□□□□□ -0.64
LSM4-201ENST00000252816 KRTAP9-3Q9BYQ3 159 aa11.06□□□□□ -0.64
LSM4-201ENST00000252816 H1FX-AS1Q4G0G2 97 aa11.05□□□□□ -0.64
LSM4-201ENST00000252816 USH2AO75445 5202 aa11.03□□□□□ -0.64
LSM4-201ENST00000252816 LCE2BO14633 110 aa10.99□□□□□ -0.65
LSM4-201ENST00000252816 C4orf26Q17RF5 130 aa10.95□□□□□ -0.66
LSM4-201ENST00000252816 SSPOA2VEC9 5147 aa10.9□□□□□ -0.66
LSM4-201ENST00000252816 TP53AIP1Q9HCN2 124 aa10.87□□□□□ -0.67
LSM4-201ENST00000252816 ACYP1P07311 99 aa10.84□□□□□ -0.67
LSM4-201ENST00000252816 KRTAP3-1Q9BYR8 98 aa10.82□□□□□ -0.68
LSM4-201ENST00000252816 FAM240AA0A1B0GVK7 77 aa10.81□□□□□ -0.68
LSM4-201ENST00000252816 KRTAP19-1Q8IUB9 90 aa10.75□□□□□ -0.69
LSM4-201ENST00000252816 C1orf64Q8NEQ6 169 aa10.74□□□□□ -0.69
LSM4-201ENST00000252816 ATP5EP2Q5VTU8 51 aa10.73□□□□□ -0.69
LSM4-201ENST00000252816 C5orf47Q569G3 176 aa10.69□□□□□ -0.7
LSM4-201ENST00000252816 A0A1B0GV90 55 aa10.68□□□□□ -0.7
LSM4-201ENST00000252816 HIST1H4AP62805 103 aaKnown RBP10.68□□□□□ -0.7
LSM4-201ENST00000252816 CYP4F30PQ9H0H9 118 aa10.68□□□□□ -0.7
LSM4-201ENST00000252816 S4R3F8 94 aa10.67□□□□□ -0.7
LSM4-201ENST00000252816 TRAV22A0A0B4J277 110 aa10.66□□□□□ -0.7
LSM4-201ENST00000252816 FCGBPQ9Y6R7 5405 aaPredicted RBP10.65□□□□□ -0.7
LSM4-201ENST00000252816 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.65□□□□□ -0.7
LSM4-201ENST00000252816 LCA10Q71F78 164 aa10.62□□□□□ -0.71
LSM4-201ENST00000252816 LINC00643Q86TS7 51 aa10.61□□□□□ -0.71
LSM4-201ENST00000252816 A0A087WVE0 104 aa10.59□□□□□ -0.71
LSM4-201ENST00000252816 LOC101927531A0A1B0GV80 90 aa10.59□□□□□ -0.71
LSM4-201ENST00000252816 UQCRQO14949 82 aa10.57□□□□□ -0.72
LSM4-201ENST00000252816 KRTAP19-6Q3LI70 58 aa10.57□□□□□ -0.72
LSM4-201ENST00000252816 CSAG1Q6PB30 78 aa10.57□□□□□ -0.72
LSM4-201ENST00000252816 H0Y9P7 68 aa10.52□□□□□ -0.73
LSM4-201ENST00000252816 KRTAP3-3Q9BYR6 98 aa10.52□□□□□ -0.73
LSM4-201ENST00000252816 FAM236AA0A1B0GUQ0 79 aa10.5□□□□□ -0.73
LSM4-201ENST00000252816 FAM236BA0A1B0GV22 79 aa10.5□□□□□ -0.73
LSM4-201ENST00000252816 ATOX1O00244 68 aa10.48□□□□□ -0.73
LSM4-201ENST00000252816 KRTAP9-7A8MTY7 169 aa10.47□□□□□ -0.73
LSM4-201ENST00000252816 OCR1Q9BZK8 76 aa10.39□□□□□ -0.75
LSM4-201ENST00000252816 LINC00208Q96KT6 92 aa10.37□□□□□ -0.75
LSM4-201ENST00000252816 J3QR89 54 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms