RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 LCA10Q71F78 164 aa10.32□□□□□ -0.76
FOXA1-201ENST00000250448 DNAH5Q8TE73 4624 aa10.31□□□□□ -0.76
FOXA1-201ENST00000250448 SPACA4Q8TDM5 124 aa10.31□□□□□ -0.76
FOXA1-201ENST00000250448 C7orf65Q6ZTY9 151 aa10.3□□□□□ -0.76
FOXA1-201ENST00000250448 Q5VV11 94 aa10.3□□□□□ -0.76
FOXA1-201ENST00000250448 CHKB-CPT1BH3BT56 60 aa10.29□□□□□ -0.76
FOXA1-201ENST00000250448 DNAH8Q96JB1 4490 aa10.28□□□□□ -0.76
FOXA1-201ENST00000250448 KRTAP13-1Q8IUC0 172 aa10.28□□□□□ -0.76
FOXA1-201ENST00000250448 Q8N9P0 234 aaPredicted RBP10.27□□□□□ -0.77
FOXA1-201ENST00000250448 PKD1P98161 4303 aa10.27□□□□□ -0.77
FOXA1-201ENST00000250448 ATP11AUNQ6ZP68 121 aa10.26□□□□□ -0.77
FOXA1-201ENST00000250448 KMT2CQ8NEZ4 4911 aaKnown RBP10.25□□□□□ -0.77
FOXA1-201ENST00000250448 LIMD2Q9BT23 127 aa10.24□□□□□ -0.77
FOXA1-201ENST00000250448 Q96NJ1 140 aa10.24□□□□□ -0.77
FOXA1-201ENST00000250448 IGLV7-46A0A075B6I9 117 aa10.22□□□□□ -0.77
FOXA1-201ENST00000250448 IGLV9-49A0A0B4J1Y8 123 aa10.22□□□□□ -0.77
FOXA1-201ENST00000250448 MOBPQ13875 183 aa10.21□□□□□ -0.77
FOXA1-201ENST00000250448 COA5Q86WW8 74 aa10.21□□□□□ -0.77
FOXA1-201ENST00000250448 ASB16-AS1Q495Z4 193 aa10.21□□□□□ -0.78
FOXA1-201ENST00000250448 PRR15LQ9BU68 103 aa10.21□□□□□ -0.78
FOXA1-201ENST00000250448 TP53AIP1Q9HCN2 124 aa10.2□□□□□ -0.78
FOXA1-201ENST00000250448 PKHD1P08F94 4074 aa10.19□□□□□ -0.78
FOXA1-201ENST00000250448 LINC00313P59037 77 aa10.18□□□□□ -0.78
FOXA1-201ENST00000250448 PCOTHQ58A44 107 aa10.18□□□□□ -0.78
FOXA1-201ENST00000250448 C8orf17Q9NRJ1 99 aa10.18□□□□□ -0.78
FOXA1-201ENST00000250448 KRTAP10-1P60331 282 aa10.18□□□□□ -0.78
FOXA1-201ENST00000250448 RYR2Q92736 4967 aa10.17□□□□□ -0.78
FOXA1-201ENST00000250448 PRAC1Q96KF2 57 aa10.16□□□□□ -0.78
FOXA1-201ENST00000250448 PLAC8Q9NZF1 115 aa10.16□□□□□ -0.78
FOXA1-201ENST00000250448 LINC01554Q52M75 96 aa10.15□□□□□ -0.79
FOXA1-201ENST00000250448 LINC00483Q53H64 154 aa10.15□□□□□ -0.79
FOXA1-201ENST00000250448 CIRBP-AS1Q8TBR5 109 aa10.13□□□□□ -0.79
FOXA1-201ENST00000250448 PSORS1C2Q9UIG4 136 aa10.13□□□□□ -0.79
FOXA1-201ENST00000250448 A0A1B0GVX0 72 aa10.12□□□□□ -0.79
FOXA1-201ENST00000250448 A6NED7 52 aa10.12□□□□□ -0.79
FOXA1-201ENST00000250448 Q75L30 129 aa10.12□□□□□ -0.79
FOXA1-201ENST00000250448 IGHV6-1A0A0B4J1U7 121 aa10.12□□□□□ -0.79
FOXA1-201ENST00000250448 LOC101927531A0A1B0GV80 90 aa10.11□□□□□ -0.79
FOXA1-201ENST00000250448 LRP1BQ9NZR2 4599 aa10.1□□□□□ -0.79
FOXA1-201ENST00000250448 ZNF706Q9Y5V0 76 aaPredicted RBP10.09□□□□□ -0.79
FOXA1-201ENST00000250448 CDK2AP2O75956 126 aa10.08□□□□□ -0.8
FOXA1-201ENST00000250448 MRPL34Q9BQ48 92 aaKnown RBP10.07□□□□□ -0.8
FOXA1-201ENST00000250448 Q6ZSA8 131 aa10.04□□□□□ -0.8
FOXA1-201ENST00000250448 DYNC1H1Q14204 4646 aaKnown RBP10.03□□□□□ -0.8
FOXA1-201ENST00000250448 ADM2Q7Z4H4 148 aa10.03□□□□□ -0.8
FOXA1-201ENST00000250448 LINC01558Q9Y6Z2 57 aa10.03□□□□□ -0.8
FOXA1-201ENST00000250448 ANAPC11Q9NYG5 84 aa10.02□□□□□ -0.81
FOXA1-201ENST00000250448 A0A087X002 238 aa10.01□□□□□ -0.81
FOXA1-201ENST00000250448 SPAG11AQ6PDA7 123 aa10.01□□□□□ -0.81
FOXA1-201ENST00000250448 NOTCH2NLQ7Z3S9 236 aa10.01□□□□□ -0.81
FOXA1-201ENST00000250448 RYR3Q15413 4870 aa10.01□□□□□ -0.81
FOXA1-201ENST00000250448 HRES1P13985 223 aa10□□□□□ -0.81
FOXA1-201ENST00000250448 CDC42SE1Q9NRR8 79 aa9.99□□□□□ -0.81
FOXA1-201ENST00000250448 ZNF861PO60384 105 aa9.97□□□□□ -0.81
FOXA1-201ENST00000250448 A0A1B0GVY2 172 aa9.96□□□□□ -0.81
FOXA1-201ENST00000250448 IGLV7-43P04211 117 aa9.96□□□□□ -0.82
FOXA1-201ENST00000250448 A0A0A0MQY5 61 aa9.95□□□□□ -0.82
FOXA1-201ENST00000250448 VPS13BQ7Z7G8 4022 aa9.94□□□□□ -0.82
FOXA1-201ENST00000250448 SPINK6Q6UWN8 80 aa9.93□□□□□ -0.82
FOXA1-201ENST00000250448 KRTAP13-3Q3SY46 172 aa9.91□□□□□ -0.82
FOXA1-201ENST00000250448 Q5W150 140 aa9.91□□□□□ -0.82
FOXA1-201ENST00000250448 SMR3BP02814 79 aaPredicted RBP9.9□□□□□ -0.82
FOXA1-201ENST00000250448 APOBP04114 4563 aaKnown RBP9.88□□□□□ -0.83
FOXA1-201ENST00000250448 FAT1Q14517 4588 aa9.87□□□□□ -0.83
FOXA1-201ENST00000250448 SPINK7P58062 85 aa9.87□□□□□ -0.83
FOXA1-201ENST00000250448 RETNLBQ9BQ08 111 aa9.83□□□□□ -0.84
FOXA1-201ENST00000250448 ACYP2P14621 99 aa9.8□□□□□ -0.84
FOXA1-201ENST00000250448 SSBP3-AS1Q7Z2R9 100 aa9.77□□□□□ -0.85
FOXA1-201ENST00000250448 DMAC1Q96GE9 116 aa9.75□□□□□ -0.85
FOXA1-201ENST00000250448 PLA2G1BP04054 148 aaKnown RBP9.73□□□□□ -0.85
FOXA1-201ENST00000250448 FAM229AH3BQW9 127 aa9.72□□□□□ -0.85
FOXA1-201ENST00000250448 KRTAP1-4P0C5Y4 121 aa9.69□□□□□ -0.86
FOXA1-201ENST00000250448 KRTAP13-2Q52LG2 175 aa9.69□□□□□ -0.86
FOXA1-201ENST00000250448 IGKV2-30P06310 120 aa9.67□□□□□ -0.86
FOXA1-201ENST00000250448 EPPK1P58107 5090 aaKnown RBP9.67□□□□□ -0.86
FOXA1-201ENST00000250448 KRTAP10-4P60372 401 aaPredicted RBP9.64□□□□□ -0.87
FOXA1-201ENST00000250448 HSPG2P98160 4391 aa9.64□□□□□ -0.87
FOXA1-201ENST00000250448 CSAG1Q6PB30 78 aa9.64□□□□□ -0.87
FOXA1-201ENST00000250448 KIAA1109Q2LD37 5005 aa9.63□□□□□ -0.87
FOXA1-201ENST00000250448 A0A1B0GU69 56 aa9.61□□□□□ -0.87
FOXA1-201ENST00000250448 KRTAP16-1A8MUX0 517 aa9.6□□□□□ -0.87
FOXA1-201ENST00000250448 RYR1P21817 5038 aa9.58□□□□□ -0.88
FOXA1-201ENST00000250448 KRTAP17-1Q9BYP8 105 aa9.57□□□□□ -0.88
FOXA1-201ENST00000250448 TYMSOSQ8TAI1 123 aa9.55□□□□□ -0.88
FOXA1-201ENST00000250448 IGKV2D-30A0A075B6S6 120 aa9.53□□□□□ -0.88
FOXA1-201ENST00000250448 SPATA8Q6RVD6 105 aa9.52□□□□□ -0.89
FOXA1-201ENST00000250448 Q5VSD8 79 aa9.51□□□□□ -0.89
FOXA1-201ENST00000250448 LRP1Q07954 4544 aaKnown RBP9.5□□□□□ -0.89
FOXA1-201ENST00000250448 FLG2Q5D862 2391 aaPredicted RBP9.5□□□□□ -0.89
FOXA1-201ENST00000250448 ROMO1P60602 79 aa9.47□□□□□ -0.89
FOXA1-201ENST00000250448 MIR22HGQ0VDD5 57 aa9.46□□□□□ -0.89
FOXA1-201ENST00000250448 UQCR11O14957 56 aa9.46□□□□□ -0.9
FOXA1-201ENST00000250448 PKHD1L1Q86WI1 4243 aa9.46□□□□□ -0.9
FOXA1-201ENST00000250448 LINC00304Q8N9R0 145 aa9.41□□□□□ -0.9
FOXA1-201ENST00000250448 MYCBP2O75592 4640 aa9.38□□□□□ -0.91
FOXA1-201ENST00000250448 SPINK1P00995 79 aa9.35□□□□□ -0.91
FOXA1-201ENST00000250448 P0C880 135 aa9.31□□□□□ -0.92
FOXA1-201ENST00000250448 Q8N1X5 172 aa9.31□□□□□ -0.92
FOXA1-201ENST00000250448 TNXBP22105 4242 aa9.3□□□□□ -0.92
FOXA1-201ENST00000250448 DMBT1Q9UGM3 2413 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms