RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 KRTAP10-4P60372 401 aaPredicted RBP5.22□□□□□ -1.57
VPS4B-201ENST00000238497 KRTAP29-1A8MX34 341 aaPredicted RBP5.21□□□□□ -1.58
VPS4B-201ENST00000238497 SPRR4Q96PI1 79 aa5.21□□□□□ -1.58
VPS4B-201ENST00000238497 IGHV6-1A0A0B4J1U7 121 aa5.2□□□□□ -1.58
VPS4B-201ENST00000238497 HCG22E2RYF7 251 aa5.2□□□□□ -1.58
VPS4B-201ENST00000238497 NDUFB1O75438 58 aa5.19□□□□□ -1.58
VPS4B-201ENST00000238497 ZNF861PO60384 105 aa5.18□□□□□ -1.58
VPS4B-201ENST00000238497 CASC2Q6XLA1 102 aa5.18□□□□□ -1.58
VPS4B-201ENST00000238497 LINC00208Q96KT6 92 aa5.18□□□□□ -1.58
VPS4B-201ENST00000238497 MPLKIPQ8TAP9 179 aa5.18□□□□□ -1.58
VPS4B-201ENST00000238497 H7BZZ5 65 aa5.17□□□□□ -1.58
VPS4B-201ENST00000238497 PMAIP1Q13794 54 aa5.16□□□□□ -1.58
VPS4B-201ENST00000238497 RETNLBQ9BQ08 111 aa5.16□□□□□ -1.58
VPS4B-201ENST00000238497 FAT3Q8TDW7 4589 aa5.16□□□□□ -1.58
VPS4B-201ENST00000238497 IGLV7-43P04211 117 aa5.15□□□□□ -1.58
VPS4B-201ENST00000238497 OCR1Q9BZK8 76 aa5.15□□□□□ -1.58
VPS4B-201ENST00000238497 ZNF706Q9Y5V0 76 aaPredicted RBP5.15□□□□□ -1.58
VPS4B-201ENST00000238497 MP68P56378 58 aa5.14□□□□□ -1.59
VPS4B-201ENST00000238497 PCOTHQ58A44 107 aa5.13□□□□□ -1.59
VPS4B-201ENST00000238497 FP248Q71RG6 208 aaPredicted RBP5.13□□□□□ -1.59
VPS4B-201ENST00000238497 PRR15Q8IV56 129 aa5.13□□□□□ -1.59
VPS4B-201ENST00000238497 KRTAP13-1Q8IUC0 172 aa5.12□□□□□ -1.59
VPS4B-201ENST00000238497 A0A1B0GW54 56 aa5.12□□□□□ -1.59
VPS4B-201ENST00000238497 KLKP1Q107X0 134 aa5.12□□□□□ -1.59
VPS4B-201ENST00000238497 SMIM26A0A096LP01 95 aa5.12□□□□□ -1.59
VPS4B-201ENST00000238497 A8MWP4 228 aa5.12□□□□□ -1.59
VPS4B-201ENST00000238497 hDV103S1A0JD37 113 aa5.11□□□□□ -1.59
VPS4B-201ENST00000238497 SPRR1BP22528 89 aa5.11□□□□□ -1.59
VPS4B-201ENST00000238497 IGLV8-61A0A075B6I0 122 aa5.11□□□□□ -1.59
VPS4B-201ENST00000238497 H0Y9P7 68 aa5.11□□□□□ -1.59
VPS4B-201ENST00000238497 LINC00472Q9H8W2 130 aa5.1□□□□□ -1.59
VPS4B-201ENST00000238497 SERP1Q9Y6X1 66 aa5.1□□□□□ -1.59
VPS4B-201ENST00000238497 MT1HL1P0DM35 61 aa5.1□□□□□ -1.59
VPS4B-201ENST00000238497 A0A087X002 238 aa5.08□□□□□ -1.6
VPS4B-201ENST00000238497 NOTCH2NLQ7Z3S9 236 aa5.08□□□□□ -1.6
VPS4B-201ENST00000238497 PRR26Q8N8Z3 221 aa5.08□□□□□ -1.6
VPS4B-201ENST00000238497 C1orf64Q8NEQ6 169 aa5.07□□□□□ -1.6
VPS4B-201ENST00000238497 NDUFC1O43677 76 aa5.06□□□□□ -1.6
VPS4B-201ENST00000238497 HMCN2Q8NDA2 5059 aa5.06□□□□□ -1.6
VPS4B-201ENST00000238497 C8orf17Q9NRJ1 99 aa5.05□□□□□ -1.6
VPS4B-201ENST00000238497 UBR4Q5T4S7 5183 aa5.05□□□□□ -1.6
VPS4B-201ENST00000238497 PKHD1L1Q86WI1 4243 aa5.05□□□□□ -1.6
VPS4B-201ENST00000238497 CD164Q04900 197 aa5.05□□□□□ -1.6
VPS4B-201ENST00000238497 MMP24-AS1A0A0U1RRL7 71 aa5.04□□□□□ -1.6
VPS4B-201ENST00000238497 LRP2P98164 4655 aa5.04□□□□□ -1.6
VPS4B-201ENST00000238497 A0A1B0GVX0 72 aa5.03□□□□□ -1.6
VPS4B-201ENST00000238497 FAM229BQ4G0N7 80 aa5.03□□□□□ -1.6
VPS4B-201ENST00000238497 LINC00483Q53H64 154 aa5.03□□□□□ -1.6
VPS4B-201ENST00000238497 KRTAP10-8P60410 259 aa5.02□□□□□ -1.61
VPS4B-201ENST00000238497 TYMSOSQ8TAI1 123 aa5.02□□□□□ -1.61
VPS4B-201ENST00000238497 TRAV22A0A0B4J277 110 aa5.02□□□□□ -1.61
VPS4B-201ENST00000238497 H3BS24 57 aa5.02□□□□□ -1.61
VPS4B-201ENST00000238497 Q96NJ1 140 aa5.02□□□□□ -1.61
VPS4B-201ENST00000238497 TNXBP22105 4242 aa5□□□□□ -1.61
VPS4B-201ENST00000238497 KRTAP13-2Q52LG2 175 aa5□□□□□ -1.61
VPS4B-201ENST00000238497 MRPL34Q9BQ48 92 aaKnown RBP5□□□□□ -1.61
VPS4B-201ENST00000238497 PSPHP1O15172 72 aa4.99□□□□□ -1.61
VPS4B-201ENST00000238497 SSBP3-AS1Q7Z2R9 100 aa4.99□□□□□ -1.61
VPS4B-201ENST00000238497 RBM12B-AS1Q9P1G2 102 aa4.98□□□□□ -1.61
VPS4B-201ENST00000238497 KRTAP1-4P0C5Y4 121 aa4.98□□□□□ -1.61
VPS4B-201ENST00000238497 LINC00313P59037 77 aa4.98□□□□□ -1.61
VPS4B-201ENST00000238497 IGKV2D-30A0A075B6S6 120 aa4.95□□□□□ -1.62
VPS4B-201ENST00000238497 IGKV2-30P06310 120 aa4.95□□□□□ -1.62
VPS4B-201ENST00000238497 SPTSSBQ8NFR3 76 aa4.95□□□□□ -1.62
VPS4B-201ENST00000238497 ATP5EP56381 51 aaPredicted RBP4.95□□□□□ -1.62
VPS4B-201ENST00000238497 C9orf92A6NGG3 77 aa4.94□□□□□ -1.62
VPS4B-201ENST00000238497 A8MU10 97 aa4.94□□□□□ -1.62
VPS4B-201ENST00000238497 Q5W150 140 aa4.94□□□□□ -1.62
VPS4B-201ENST00000238497 ZCCHC13Q8WW36 166 aaKnown RBP4.93□□□□□ -1.62
VPS4B-201ENST00000238497 RNF213Q63HN8 5207 aa4.92□□□□□ -1.62
VPS4B-201ENST00000238497 TP53AIP1Q9HCN2 124 aa4.92□□□□□ -1.62
VPS4B-201ENST00000238497 Q8N9P0 234 aaPredicted RBP4.91□□□□□ -1.62
VPS4B-201ENST00000238497 LINC00304Q8N9R0 145 aa4.91□□□□□ -1.62
VPS4B-201ENST00000238497 LIMD2Q9BT23 127 aa4.9□□□□□ -1.63
VPS4B-201ENST00000238497 SPAG11AQ6PDA7 123 aa4.89□□□□□ -1.63
VPS4B-201ENST00000238497 LPAP08519 4548 aa4.88□□□□□ -1.63
VPS4B-201ENST00000238497 A8MUN3 132 aa4.87□□□□□ -1.63
VPS4B-201ENST00000238497 COA5Q86WW8 74 aa4.87□□□□□ -1.63
VPS4B-201ENST00000238497 CHKB-CPT1BH3BT56 60 aa4.87□□□□□ -1.63
VPS4B-201ENST00000238497 SPINK1P00995 79 aa4.87□□□□□ -1.63
VPS4B-201ENST00000238497 H3BPC8 53 aa4.86□□□□□ -1.63
VPS4B-201ENST00000238497 PRR15LQ9BU68 103 aa4.86□□□□□ -1.63
VPS4B-201ENST00000238497 KTN1-AS1Q86SY8 53 aa4.85□□□□□ -1.63
VPS4B-201ENST00000238497 C8orf87E5RJ46 101 aa4.84□□□□□ -1.63
VPS4B-201ENST00000238497 IGLV7-46A0A075B6I9 117 aa4.83□□□□□ -1.64
VPS4B-201ENST00000238497 CYP4F30PQ9H0H9 118 aa4.82□□□□□ -1.64
VPS4B-201ENST00000238497 LOC101927531A0A1B0GV80 90 aa4.82□□□□□ -1.64
VPS4B-201ENST00000238497 HRES1P13985 223 aa4.81□□□□□ -1.64
VPS4B-201ENST00000238497 ASB16-AS1Q495Z4 193 aa4.8□□□□□ -1.64
VPS4B-201ENST00000238497 SPANXA2-OT1Q8N9U9 137 aa4.79□□□□□ -1.64
VPS4B-201ENST00000238497 A6NED7 52 aa4.79□□□□□ -1.64
VPS4B-201ENST00000238497 C7orf65Q6ZTY9 151 aa4.79□□□□□ -1.64
VPS4B-201ENST00000238497 ACYP2P14621 99 aa4.75□□□□□ -1.65
VPS4B-201ENST00000238497 MUC2Q02817 5179 aa4.75□□□□□ -1.65
VPS4B-201ENST00000238497 Q1T7F1 81 aa4.74□□□□□ -1.65
VPS4B-201ENST00000238497 PRAC1Q96KF2 57 aa4.73□□□□□ -1.65
VPS4B-201ENST00000238497 KRTAP16-1A8MUX0 517 aa4.72□□□□□ -1.65
VPS4B-201ENST00000238497 TPRXLQ17RH7 258 aa4.71□□□□□ -1.66
VPS4B-201ENST00000238497 Q5VV11 94 aa4.71□□□□□ -1.66
VPS4B-201ENST00000238497 LCA10Q71F78 164 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms