RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 SMR3BP02814 79 aaPredicted RBP8.78□□□□□ -1
CCDC47-201ENST00000225726 KRTAP1-4P0C5Y4 121 aa8.78□□□□□ -1
CCDC47-201ENST00000225726 VPS13BQ7Z7G8 4022 aa8.78□□□□□ -1
CCDC47-201ENST00000225726 A0A087X002 238 aa8.77□□□□□ -1.01
CCDC47-201ENST00000225726 KRTAP13-2Q52LG2 175 aa8.76□□□□□ -1.01
CCDC47-201ENST00000225726 PRR15Q8IV56 129 aa8.76□□□□□ -1.01
CCDC47-201ENST00000225726 K7EQZ3 153 aa8.75□□□□□ -1.01
CCDC47-201ENST00000225726 NDUFC1O43677 76 aa8.75□□□□□ -1.01
CCDC47-201ENST00000225726 APOBP04114 4563 aaKnown RBP8.74□□□□□ -1.01
CCDC47-201ENST00000225726 PRR15LQ9BU68 103 aa8.74□□□□□ -1.01
CCDC47-201ENST00000225726 Q96NJ1 140 aa8.73□□□□□ -1.01
CCDC47-201ENST00000225726 A6NED7 52 aa8.73□□□□□ -1.01
CCDC47-201ENST00000225726 KRTAP10-4P60372 401 aaPredicted RBP8.71□□□□□ -1.01
CCDC47-201ENST00000225726 PLA2G1BP04054 148 aaKnown RBP8.71□□□□□ -1.02
CCDC47-201ENST00000225726 A8MWP4 228 aa8.71□□□□□ -1.02
CCDC47-201ENST00000225726 ATP5EP56381 51 aaPredicted RBP8.69□□□□□ -1.02
CCDC47-201ENST00000225726 hDV103S1A0JD37 113 aa8.67□□□□□ -1.02
CCDC47-201ENST00000225726 HCG22E2RYF7 251 aa8.67□□□□□ -1.02
CCDC47-201ENST00000225726 PRAC1Q96KF2 57 aa8.66□□□□□ -1.02
CCDC47-201ENST00000225726 RYR3Q15413 4870 aa8.66□□□□□ -1.02
CCDC47-201ENST00000225726 ASB16-AS1Q495Z4 193 aa8.66□□□□□ -1.02
CCDC47-201ENST00000225726 TYMSOSQ8TAI1 123 aa8.66□□□□□ -1.02
CCDC47-201ENST00000225726 NDUFB1O75438 58 aa8.65□□□□□ -1.02
CCDC47-201ENST00000225726 KTN1-AS1Q86SY8 53 aa8.64□□□□□ -1.03
CCDC47-201ENST00000225726 CDK2AP2O75956 126 aa8.64□□□□□ -1.03
CCDC47-201ENST00000225726 FAM229AH3BQW9 127 aa8.61□□□□□ -1.03
CCDC47-201ENST00000225726 WFDC13Q8IUB5 93 aa8.61□□□□□ -1.03
CCDC47-201ENST00000225726 OCR1Q9BZK8 76 aa8.61□□□□□ -1.03
CCDC47-201ENST00000225726 PRR26Q8N8Z3 221 aa8.61□□□□□ -1.03
CCDC47-201ENST00000225726 KRTAP29-1A8MX34 341 aaPredicted RBP8.6□□□□□ -1.03
CCDC47-201ENST00000225726 LIMD2Q9BT23 127 aa8.6□□□□□ -1.03
CCDC47-201ENST00000225726 A0A1B0GVX0 72 aa8.59□□□□□ -1.03
CCDC47-201ENST00000225726 CASC2Q6XLA1 102 aa8.59□□□□□ -1.04
CCDC47-201ENST00000225726 MMP24-AS1A0A0U1RRL7 71 aa8.58□□□□□ -1.04
CCDC47-201ENST00000225726 PKHD1L1Q86WI1 4243 aa8.57□□□□□ -1.04
CCDC47-201ENST00000225726 Q5VV11 94 aa8.57□□□□□ -1.04
CCDC47-201ENST00000225726 FAT1Q14517 4588 aa8.57□□□□□ -1.04
CCDC47-201ENST00000225726 SPINK1P00995 79 aa8.57□□□□□ -1.04
CCDC47-201ENST00000225726 C8orf17Q9NRJ1 99 aa8.56□□□□□ -1.04
CCDC47-201ENST00000225726 IGHV6-1A0A0B4J1U7 121 aa8.55□□□□□ -1.04
CCDC47-201ENST00000225726 C8orf87E5RJ46 101 aa8.55□□□□□ -1.04
CCDC47-201ENST00000225726 LINC00304Q8N9R0 145 aa8.55□□□□□ -1.04
CCDC47-201ENST00000225726 LINC00208Q96KT6 92 aa8.55□□□□□ -1.04
CCDC47-201ENST00000225726 Q5VSD8 79 aa8.55□□□□□ -1.04
CCDC47-201ENST00000225726 SPAG11AQ6PDA7 123 aa8.54□□□□□ -1.04
CCDC47-201ENST00000225726 RPS29P62273 56 aaKnown RBP8.53□□□□□ -1.04
CCDC47-201ENST00000225726 Q1T7F1 81 aa8.53□□□□□ -1.04
CCDC47-201ENST00000225726 LCA10Q71F78 164 aa8.52□□□□□ -1.05
CCDC47-201ENST00000225726 ADM2Q7Z4H4 148 aa8.52□□□□□ -1.05
CCDC47-201ENST00000225726 HSPG2P98160 4391 aa8.5□□□□□ -1.05
CCDC47-201ENST00000225726 NOTCH2NLQ7Z3S9 236 aa8.47□□□□□ -1.05
CCDC47-201ENST00000225726 RYR1P21817 5038 aa8.46□□□□□ -1.06
CCDC47-201ENST00000225726 PCOTHQ58A44 107 aa8.45□□□□□ -1.06
CCDC47-201ENST00000225726 MRPL34Q9BQ48 92 aaKnown RBP8.45□□□□□ -1.06
CCDC47-201ENST00000225726 KRTAP17-1Q9BYP8 105 aa8.42□□□□□ -1.06
CCDC47-201ENST00000225726 Q8N1X5 172 aa8.42□□□□□ -1.06
CCDC47-201ENST00000225726 TP53AIP1Q9HCN2 124 aa8.42□□□□□ -1.06
CCDC47-201ENST00000225726 LINC00313P59037 77 aa8.41□□□□□ -1.06
CCDC47-201ENST00000225726 Q8N9P0 234 aaPredicted RBP8.41□□□□□ -1.06
CCDC47-201ENST00000225726 C7orf65Q6ZTY9 151 aa8.4□□□□□ -1.06
CCDC47-201ENST00000225726 MP68P56378 58 aa8.39□□□□□ -1.07
CCDC47-201ENST00000225726 FLG2Q5D862 2391 aaPredicted RBP8.39□□□□□ -1.07
CCDC47-201ENST00000225726 NDUFS5O43920 106 aa8.39□□□□□ -1.07
CCDC47-201ENST00000225726 KRTAP10-8P60410 259 aa8.38□□□□□ -1.07
CCDC47-201ENST00000225726 H0Y9P7 68 aa8.37□□□□□ -1.07
CCDC47-201ENST00000225726 ATP11AUNQ6ZP68 121 aa8.37□□□□□ -1.07
CCDC47-201ENST00000225726 ZCCHC13Q8WW36 166 aaKnown RBP8.37□□□□□ -1.07
CCDC47-201ENST00000225726 SPINK7P58062 85 aa8.36□□□□□ -1.07
CCDC47-201ENST00000225726 H3BPC8 53 aa8.36□□□□□ -1.07
CCDC47-201ENST00000225726 A6NN06 94 aa8.35□□□□□ -1.07
CCDC47-201ENST00000225726 EPPK1P58107 5090 aaKnown RBP8.34□□□□□ -1.07
CCDC47-201ENST00000225726 KRTAP16-1A8MUX0 517 aa8.33□□□□□ -1.08
CCDC47-201ENST00000225726 KIAA1109Q2LD37 5005 aa8.32□□□□□ -1.08
CCDC47-201ENST00000225726 COA5Q86WW8 74 aa8.3□□□□□ -1.08
CCDC47-201ENST00000225726 TNXBP22105 4242 aa8.29□□□□□ -1.08
CCDC47-201ENST00000225726 FAT3Q8TDW7 4589 aa8.26□□□□□ -1.09
CCDC47-201ENST00000225726 LOC101927531A0A1B0GV80 90 aa8.26□□□□□ -1.09
CCDC47-201ENST00000225726 RETNLBQ9BQ08 111 aa8.26□□□□□ -1.09
CCDC47-201ENST00000225726 KRTAP13-3Q3SY46 172 aa8.25□□□□□ -1.09
CCDC47-201ENST00000225726 LRP1Q07954 4544 aaKnown RBP8.25□□□□□ -1.09
CCDC47-201ENST00000225726 LINC01554Q52M75 96 aa8.24□□□□□ -1.09
CCDC47-201ENST00000225726 Q5W150 140 aa8.24□□□□□ -1.09
CCDC47-201ENST00000225726 CDC42SE1Q9NRR8 79 aa8.24□□□□□ -1.09
CCDC47-201ENST00000225726 MT1HL1P0DM35 61 aa8.23□□□□□ -1.09
CCDC47-201ENST00000225726 CYP4F30PQ9H0H9 118 aa8.21□□□□□ -1.1
CCDC47-201ENST00000225726 C9orf92A6NGG3 77 aa8.19□□□□□ -1.1
CCDC47-201ENST00000225726 Q75L30 129 aa8.18□□□□□ -1.1
CCDC47-201ENST00000225726 DMBT1Q9UGM3 2413 aaPredicted RBP8.17□□□□□ -1.1
CCDC47-201ENST00000225726 KRTAP4-5Q9BYR2 181 aa8.16□□□□□ -1.1
CCDC47-201ENST00000225726 SPANXA2-OT1Q8N9U9 137 aa8.15□□□□□ -1.11
CCDC47-201ENST00000225726 C20orf166-AS1Q96NR2 134 aa8.14□□□□□ -1.11
CCDC47-201ENST00000225726 A8MUU9 505 aa8.13□□□□□ -1.11
CCDC47-201ENST00000225726 CSAG1Q6PB30 78 aa8.13□□□□□ -1.11
CCDC47-201ENST00000225726 IGKV2-30P06310 120 aa8.1□□□□□ -1.11
CCDC47-201ENST00000225726 MYCBP2O75592 4640 aa8.09□□□□□ -1.11
CCDC47-201ENST00000225726 IGLV7-46A0A075B6I9 117 aa8.08□□□□□ -1.12
CCDC47-201ENST00000225726 CRIPTQ9P021 101 aa8.04□□□□□ -1.12
CCDC47-201ENST00000225726 BIRC6Q9NR09 4857 aa8.03□□□□□ -1.12
CCDC47-201ENST00000225726 IGKV2D-30A0A075B6S6 120 aa8.02□□□□□ -1.12
CCDC47-201ENST00000225726 HRES1P13985 223 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms