RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 KIAA1109Q2LD37 5005 aa11.52□□□□□ -0.56
TNFRSF1A-201ENST00000162749 LINC00472Q9H8W2 130 aa11.52□□□□□ -0.56
TNFRSF1A-201ENST00000162749 CD164Q04900 197 aa11.49□□□□□ -0.57
TNFRSF1A-201ENST00000162749 PKHD1L1Q86WI1 4243 aa11.48□□□□□ -0.57
TNFRSF1A-201ENST00000162749 WFDC13Q8IUB5 93 aa11.46□□□□□ -0.57
TNFRSF1A-201ENST00000162749 Q96NJ1 140 aa11.46□□□□□ -0.57
TNFRSF1A-201ENST00000162749 FAM229AH3BQW9 127 aa11.45□□□□□ -0.58
TNFRSF1A-201ENST00000162749 KRTAP29-1A8MX34 341 aaPredicted RBP11.44□□□□□ -0.58
TNFRSF1A-201ENST00000162749 PRR15Q8IV56 129 aa11.44□□□□□ -0.58
TNFRSF1A-201ENST00000162749 A8MWP4 228 aa11.44□□□□□ -0.58
TNFRSF1A-201ENST00000162749 PRR26Q8N8Z3 221 aa11.43□□□□□ -0.58
TNFRSF1A-201ENST00000162749 TYMSOSQ8TAI1 123 aa11.43□□□□□ -0.58
TNFRSF1A-201ENST00000162749 Q5VSD8 79 aa11.41□□□□□ -0.58
TNFRSF1A-201ENST00000162749 BRK1Q8WUW1 75 aa11.4□□□□□ -0.58
TNFRSF1A-201ENST00000162749 ZCCHC13Q8WW36 166 aaKnown RBP11.38□□□□□ -0.59
TNFRSF1A-201ENST00000162749 CASC2Q6XLA1 102 aa11.36□□□□□ -0.59
TNFRSF1A-201ENST00000162749 KRTAP17-1Q9BYP8 105 aa11.36□□□□□ -0.59
TNFRSF1A-201ENST00000162749 MPLKIPQ8TAP9 179 aa11.36□□□□□ -0.59
TNFRSF1A-201ENST00000162749 LRP1Q07954 4544 aaKnown RBP11.36□□□□□ -0.59
TNFRSF1A-201ENST00000162749 ASB16-AS1Q495Z4 193 aa11.33□□□□□ -0.59
TNFRSF1A-201ENST00000162749 MMP24-AS1A0A0U1RRL7 71 aa11.31□□□□□ -0.6
TNFRSF1A-201ENST00000162749 C4orf48Q5BLP8 95 aa11.31□□□□□ -0.6
TNFRSF1A-201ENST00000162749 FLG2Q5D862 2391 aaPredicted RBP11.31□□□□□ -0.6
TNFRSF1A-201ENST00000162749 SPINK1P00995 79 aa11.29□□□□□ -0.6
TNFRSF1A-201ENST00000162749 LINC00304Q8N9R0 145 aa11.29□□□□□ -0.6
TNFRSF1A-201ENST00000162749 NDUFB1O75438 58 aa11.29□□□□□ -0.6
TNFRSF1A-201ENST00000162749 LIMD2Q9BT23 127 aa11.28□□□□□ -0.6
TNFRSF1A-201ENST00000162749 TNXBP22105 4242 aa11.27□□□□□ -0.61
TNFRSF1A-201ENST00000162749 C1orf195Q5TG92 126 aa11.26□□□□□ -0.61
TNFRSF1A-201ENST00000162749 Q8N1X5 172 aa11.25□□□□□ -0.61
TNFRSF1A-201ENST00000162749 MYCBP2O75592 4640 aa11.25□□□□□ -0.61
TNFRSF1A-201ENST00000162749 A0A1B0GVX0 72 aa11.24□□□□□ -0.61
TNFRSF1A-201ENST00000162749 FAT3Q8TDW7 4589 aa11.23□□□□□ -0.61
TNFRSF1A-201ENST00000162749 hDV103S1A0JD37 113 aa11.23□□□□□ -0.61
TNFRSF1A-201ENST00000162749 SPAG11AQ6PDA7 123 aa11.23□□□□□ -0.61
TNFRSF1A-201ENST00000162749 MP68P56378 58 aa11.23□□□□□ -0.61
TNFRSF1A-201ENST00000162749 RPS29P62273 56 aaKnown RBP11.22□□□□□ -0.61
TNFRSF1A-201ENST00000162749 IGHV6-1A0A0B4J1U7 121 aa11.21□□□□□ -0.61
TNFRSF1A-201ENST00000162749 LINC00208Q96KT6 92 aa11.21□□□□□ -0.62
TNFRSF1A-201ENST00000162749 H0Y9P7 68 aa11.2□□□□□ -0.62
TNFRSF1A-201ENST00000162749 C8orf17Q9NRJ1 99 aa11.2□□□□□ -0.62
TNFRSF1A-201ENST00000162749 TRAV22A0A0B4J277 110 aa11.18□□□□□ -0.62
TNFRSF1A-201ENST00000162749 SEC61GP60059 68 aa11.18□□□□□ -0.62
TNFRSF1A-201ENST00000162749 V9GYY9 64 aa11.18□□□□□ -0.62
TNFRSF1A-201ENST00000162749 NOTCH2NLQ7Z3S9 236 aa11.16□□□□□ -0.62
TNFRSF1A-201ENST00000162749 H3BPC8 53 aa11.15□□□□□ -0.63
TNFRSF1A-201ENST00000162749 KRTAP10-8P60410 259 aa11.13□□□□□ -0.63
TNFRSF1A-201ENST00000162749 DMBT1Q9UGM3 2413 aaPredicted RBP11.13□□□□□ -0.63
TNFRSF1A-201ENST00000162749 C1orf64Q8NEQ6 169 aa11.12□□□□□ -0.63
TNFRSF1A-201ENST00000162749 Q1T7F1 81 aa11.11□□□□□ -0.63
TNFRSF1A-201ENST00000162749 PRR4Q16378 134 aa11.11□□□□□ -0.63
TNFRSF1A-201ENST00000162749 CYP4F30PQ9H0H9 118 aa11.09□□□□□ -0.63
TNFRSF1A-201ENST00000162749 TP53AIP1Q9HCN2 124 aa11.08□□□□□ -0.64
TNFRSF1A-201ENST00000162749 MRPL34Q9BQ48 92 aaKnown RBP11.07□□□□□ -0.64
TNFRSF1A-201ENST00000162749 C8orf87E5RJ46 101 aa11.05□□□□□ -0.64
TNFRSF1A-201ENST00000162749 BIRC6Q9NR09 4857 aa11.05□□□□□ -0.64
TNFRSF1A-201ENST00000162749 KRTAP4-5Q9BYR2 181 aa11.04□□□□□ -0.64
TNFRSF1A-201ENST00000162749 LINC00313P59037 77 aa11.03□□□□□ -0.64
TNFRSF1A-201ENST00000162749 NDUFS5O43920 106 aa11.03□□□□□ -0.64
TNFRSF1A-201ENST00000162749 SPANXA2-OT1Q8N9U9 137 aa11.02□□□□□ -0.65
TNFRSF1A-201ENST00000162749 PSPHP1O15172 72 aa11□□□□□ -0.65
TNFRSF1A-201ENST00000162749 MT1HL1P0DM35 61 aa11□□□□□ -0.65
TNFRSF1A-201ENST00000162749 RETNLBQ9BQ08 111 aa10.99□□□□□ -0.65
TNFRSF1A-201ENST00000162749 ABCA13Q86UQ4 5058 aa10.97□□□□□ -0.65
TNFRSF1A-201ENST00000162749 PMAIP1Q13794 54 aa10.96□□□□□ -0.66
TNFRSF1A-201ENST00000162749 KRTAP16-1A8MUX0 517 aa10.95□□□□□ -0.66
TNFRSF1A-201ENST00000162749 HERC2O95714 4834 aa10.94□□□□□ -0.66
TNFRSF1A-201ENST00000162749 PCOTHQ58A44 107 aa10.93□□□□□ -0.66
TNFRSF1A-201ENST00000162749 Q5W150 140 aa10.91□□□□□ -0.66
TNFRSF1A-201ENST00000162749 IGLV7-46A0A075B6I9 117 aa10.9□□□□□ -0.66
TNFRSF1A-201ENST00000162749 Q8N9P0 234 aaPredicted RBP10.9□□□□□ -0.66
TNFRSF1A-201ENST00000162749 A8MUN3 132 aa10.89□□□□□ -0.67
TNFRSF1A-201ENST00000162749 KRTAP13-3Q3SY46 172 aa10.89□□□□□ -0.67
TNFRSF1A-201ENST00000162749 C9orf92A6NGG3 77 aa10.83□□□□□ -0.68
TNFRSF1A-201ENST00000162749 Q5VV11 94 aa10.82□□□□□ -0.68
TNFRSF1A-201ENST00000162749 LOC101927531A0A1B0GV80 90 aa10.8□□□□□ -0.68
TNFRSF1A-201ENST00000162749 A8MU10 97 aa10.77□□□□□ -0.69
TNFRSF1A-201ENST00000162749 COA5Q86WW8 74 aa10.77□□□□□ -0.69
TNFRSF1A-201ENST00000162749 CHKB-CPT1BH3BT56 60 aa10.74□□□□□ -0.69
TNFRSF1A-201ENST00000162749 PRR15LQ9BU68 103 aa10.73□□□□□ -0.69
TNFRSF1A-201ENST00000162749 C20orf166-AS1Q96NR2 134 aa10.71□□□□□ -0.69
TNFRSF1A-201ENST00000162749 A8MUU9 505 aa10.69□□□□□ -0.7
TNFRSF1A-201ENST00000162749 HRES1P13985 223 aa10.67□□□□□ -0.7
TNFRSF1A-201ENST00000162749 Q75L30 129 aa10.64□□□□□ -0.71
TNFRSF1A-201ENST00000162749 IGKV2-30P06310 120 aa10.62□□□□□ -0.71
TNFRSF1A-201ENST00000162749 KTN1-AS1Q86SY8 53 aa10.62□□□□□ -0.71
TNFRSF1A-201ENST00000162749 SPTSSBQ8NFR3 76 aa10.62□□□□□ -0.71
TNFRSF1A-201ENST00000162749 PCLOQ9Y6V0 5065 aa10.62□□□□□ -0.71
TNFRSF1A-201ENST00000162749 J3QL48 77 aa10.61□□□□□ -0.71
TNFRSF1A-201ENST00000162749 A6NED7 52 aa10.6□□□□□ -0.71
TNFRSF1A-201ENST00000162749 LCA10Q71F78 164 aa10.59□□□□□ -0.71
TNFRSF1A-201ENST00000162749 ATP11AUNQ6ZP68 121 aa10.58□□□□□ -0.72
TNFRSF1A-201ENST00000162749 XP32Q5T750 250 aa10.56□□□□□ -0.72
TNFRSF1A-201ENST00000162749 LPAP08519 4548 aa10.54□□□□□ -0.72
TNFRSF1A-201ENST00000162749 IGKV2D-30A0A075B6S6 120 aa10.53□□□□□ -0.72
TNFRSF1A-201ENST00000162749 DMAC1Q96GE9 116 aa10.53□□□□□ -0.72
TNFRSF1A-201ENST00000162749 LRP2P98164 4655 aa10.52□□□□□ -0.73
TNFRSF1A-201ENST00000162749 TPRXLQ17RH7 258 aa10.52□□□□□ -0.73
TNFRSF1A-201ENST00000162749 CDC42SE1Q9NRR8 79 aa10.52□□□□□ -0.73
TNFRSF1A-201ENST00000162749 A6NN06 94 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms