RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 SMIM26A0A096LP01 95 aa4.86□□□□□ -1.63
VAMP3-201ENST00000054666 ASB16-AS1Q495Z4 193 aa4.86□□□□□ -1.63
VAMP3-201ENST00000054666 PKD1P98161 4303 aa4.86□□□□□ -1.63
VAMP3-201ENST00000054666 XP32Q5T750 250 aa4.85□□□□□ -1.63
VAMP3-201ENST00000054666 MRPL34Q9BQ48 92 aaKnown RBP4.85□□□□□ -1.63
VAMP3-201ENST00000054666 LINC00336Q6ZUF6 198 aa4.85□□□□□ -1.63
VAMP3-201ENST00000054666 C1orf64Q8NEQ6 169 aa4.85□□□□□ -1.63
VAMP3-201ENST00000054666 A0A087X002 238 aa4.84□□□□□ -1.63
VAMP3-201ENST00000054666 SACSQ9NZJ4 4579 aa4.84□□□□□ -1.63
VAMP3-201ENST00000054666 C8orf87E5RJ46 101 aa4.82□□□□□ -1.64
VAMP3-201ENST00000054666 LCE2BO14633 110 aa4.82□□□□□ -1.64
VAMP3-201ENST00000054666 KRTAP13-2Q52LG2 175 aa4.82□□□□□ -1.64
VAMP3-201ENST00000054666 Q5XG85 94 aa4.82□□□□□ -1.64
VAMP3-201ENST00000054666 LIMD2Q9BT23 127 aa4.82□□□□□ -1.64
VAMP3-201ENST00000054666 CYP4F30PQ9H0H9 118 aa4.82□□□□□ -1.64
VAMP3-201ENST00000054666 LRP1BQ9NZR2 4599 aa4.82□□□□□ -1.64
VAMP3-201ENST00000054666 PRR4Q16378 134 aa4.81□□□□□ -1.64
VAMP3-201ENST00000054666 SPANXA2-OT1Q8N9U9 137 aa4.81□□□□□ -1.64
VAMP3-201ENST00000054666 KRTAP1-4P0C5Y4 121 aa4.81□□□□□ -1.64
VAMP3-201ENST00000054666 VPS13BQ7Z7G8 4022 aa4.8□□□□□ -1.64
VAMP3-201ENST00000054666 C4orf26Q17RF5 130 aa4.8□□□□□ -1.64
VAMP3-201ENST00000054666 NOTCH2NLQ7Z3S9 236 aa4.8□□□□□ -1.64
VAMP3-201ENST00000054666 PLA2G1BP04054 148 aaKnown RBP4.79□□□□□ -1.64
VAMP3-201ENST00000054666 LOC100996750A0A140TA64 210 aa4.78□□□□□ -1.64
VAMP3-201ENST00000054666 FP248Q71RG6 208 aaPredicted RBP4.78□□□□□ -1.64
VAMP3-201ENST00000054666 TYMSOSQ8TAI1 123 aa4.78□□□□□ -1.64
VAMP3-201ENST00000054666 KRTAP4-6Q9BYQ5 205 aa4.78□□□□□ -1.64
VAMP3-201ENST00000054666 C1orf195Q5TG92 126 aa4.77□□□□□ -1.65
VAMP3-201ENST00000054666 PKHD1P08F94 4074 aa4.77□□□□□ -1.65
VAMP3-201ENST00000054666 LINC00313P59037 77 aa4.77□□□□□ -1.65
VAMP3-201ENST00000054666 PCOTHQ58A44 107 aa4.76□□□□□ -1.65
VAMP3-201ENST00000054666 LOC101927531A0A1B0GV80 90 aa4.76□□□□□ -1.65
VAMP3-201ENST00000054666 MPLKIPQ8TAP9 179 aa4.76□□□□□ -1.65
VAMP3-201ENST00000054666 SPINK1P00995 79 aa4.75□□□□□ -1.65
VAMP3-201ENST00000054666 IGLV7-46A0A075B6I9 117 aa4.74□□□□□ -1.65
VAMP3-201ENST00000054666 A0A1B0GVY2 172 aa4.74□□□□□ -1.65
VAMP3-201ENST00000054666 FAM229AH3BQW9 127 aa4.73□□□□□ -1.65
VAMP3-201ENST00000054666 DYNC1H1Q14204 4646 aaKnown RBP4.73□□□□□ -1.65
VAMP3-201ENST00000054666 SMR3BP02814 79 aaPredicted RBP4.72□□□□□ -1.65
VAMP3-201ENST00000054666 LINC00304Q8N9R0 145 aa4.72□□□□□ -1.65
VAMP3-201ENST00000054666 SPAG11AQ6PDA7 123 aa4.72□□□□□ -1.65
VAMP3-201ENST00000054666 RPS29P62273 56 aaKnown RBP4.71□□□□□ -1.66
VAMP3-201ENST00000054666 PRR26Q8N8Z3 221 aa4.71□□□□□ -1.66
VAMP3-201ENST00000054666 Q8N9P0 234 aaPredicted RBP4.71□□□□□ -1.66
VAMP3-201ENST00000054666 KRTAP13-3Q3SY46 172 aa4.7□□□□□ -1.66
VAMP3-201ENST00000054666 Q5W150 140 aa4.7□□□□□ -1.66
VAMP3-201ENST00000054666 V9GYY9 64 aa4.7□□□□□ -1.66
VAMP3-201ENST00000054666 Q1T7F1 81 aa4.69□□□□□ -1.66
VAMP3-201ENST00000054666 COA5Q86WW8 74 aa4.69□□□□□ -1.66
VAMP3-201ENST00000054666 APOBP04114 4563 aaKnown RBP4.69□□□□□ -1.66
VAMP3-201ENST00000054666 RYR2Q92736 4967 aa4.67□□□□□ -1.66
VAMP3-201ENST00000054666 KRTAP16-1A8MUX0 517 aa4.67□□□□□ -1.66
VAMP3-201ENST00000054666 RETNLBQ9BQ08 111 aa4.66□□□□□ -1.66
VAMP3-201ENST00000054666 FAT1Q14517 4588 aa4.65□□□□□ -1.67
VAMP3-201ENST00000054666 IGKV2-30P06310 120 aa4.64□□□□□ -1.67
VAMP3-201ENST00000054666 PKHD1L1Q86WI1 4243 aa4.64□□□□□ -1.67
VAMP3-201ENST00000054666 KRTAP10-4P60372 401 aaPredicted RBP4.64□□□□□ -1.67
VAMP3-201ENST00000054666 PSPHP1O15172 72 aa4.63□□□□□ -1.67
VAMP3-201ENST00000054666 BRK1Q8WUW1 75 aa4.63□□□□□ -1.67
VAMP3-201ENST00000054666 HRES1P13985 223 aa4.62□□□□□ -1.67
VAMP3-201ENST00000054666 ACYP2P14621 99 aa4.61□□□□□ -1.67
VAMP3-201ENST00000054666 PRO0628Q9UI54 55 aa4.61□□□□□ -1.67
VAMP3-201ENST00000054666 IGKV2D-30A0A075B6S6 120 aa4.61□□□□□ -1.67
VAMP3-201ENST00000054666 KMT2CQ8NEZ4 4911 aaKnown RBP4.6□□□□□ -1.67
VAMP3-201ENST00000054666 A8MUN3 132 aa4.6□□□□□ -1.67
VAMP3-201ENST00000054666 DMAC1Q96GE9 116 aa4.6□□□□□ -1.67
VAMP3-201ENST00000054666 CHKB-CPT1BH3BT56 60 aa4.59□□□□□ -1.67
VAMP3-201ENST00000054666 PRR15LQ9BU68 103 aa4.59□□□□□ -1.67
VAMP3-201ENST00000054666 C7orf65Q6ZTY9 151 aa4.57□□□□□ -1.68
VAMP3-201ENST00000054666 Q5VV11 94 aa4.57□□□□□ -1.68
VAMP3-201ENST00000054666 C9orf92A6NGG3 77 aa4.56□□□□□ -1.68
VAMP3-201ENST00000054666 LCE2CQ5TA81 110 aa4.56□□□□□ -1.68
VAMP3-201ENST00000054666 Q5VSD8 79 aa4.56□□□□□ -1.68
VAMP3-201ENST00000054666 LINC01558Q9Y6Z2 57 aa4.55□□□□□ -1.68
VAMP3-201ENST00000054666 Q75L30 129 aa4.54□□□□□ -1.68
VAMP3-201ENST00000054666 C20orf166-AS1Q96NR2 134 aa4.54□□□□□ -1.68
VAMP3-201ENST00000054666 A8MUU9 505 aa4.53□□□□□ -1.68
VAMP3-201ENST00000054666 HSPG2P98160 4391 aa4.52□□□□□ -1.69
VAMP3-201ENST00000054666 LCE2AQ5TA79 106 aaPredicted RBP4.52□□□□□ -1.69
VAMP3-201ENST00000054666 A6NED7 52 aa4.51□□□□□ -1.69
VAMP3-201ENST00000054666 Q8N1X5 172 aa4.49□□□□□ -1.69
VAMP3-201ENST00000054666 FLG2Q5D862 2391 aaPredicted RBP4.49□□□□□ -1.69
VAMP3-201ENST00000054666 TNXBP22105 4242 aa4.49□□□□□ -1.69
VAMP3-201ENST00000054666 KRTAP10-8P60410 259 aa4.48□□□□□ -1.69
VAMP3-201ENST00000054666 RYR3Q15413 4870 aa4.47□□□□□ -1.69
VAMP3-201ENST00000054666 RYR1P21817 5038 aa4.46□□□□□ -1.7
VAMP3-201ENST00000054666 A0A1B0GU69 56 aa4.45□□□□□ -1.7
VAMP3-201ENST00000054666 FAT3Q8TDW7 4589 aa4.44□□□□□ -1.7
VAMP3-201ENST00000054666 LRP1Q07954 4544 aaKnown RBP4.44□□□□□ -1.7
VAMP3-201ENST00000054666 SPINK7P58062 85 aa4.44□□□□□ -1.7
VAMP3-201ENST00000054666 CDC42SE1Q9NRR8 79 aa4.44□□□□□ -1.7
VAMP3-201ENST00000054666 SPTSSBQ8NFR3 76 aa4.43□□□□□ -1.7
VAMP3-201ENST00000054666 ATP11AUNQ6ZP68 121 aa4.42□□□□□ -1.7
VAMP3-201ENST00000054666 LORP23490 312 aaPredicted RBP4.41□□□□□ -1.7
VAMP3-201ENST00000054666 A8MU10 97 aa4.4□□□□□ -1.7
VAMP3-201ENST00000054666 LCA10Q71F78 164 aa4.4□□□□□ -1.7
VAMP3-201ENST00000054666 RPL37P61927 97 aaKnown RBP4.39□□□□□ -1.71
VAMP3-201ENST00000054666 H3BS24 57 aa4.38□□□□□ -1.71
VAMP3-201ENST00000054666 SEC61GP60059 68 aa4.38□□□□□ -1.71
VAMP3-201ENST00000054666 DMBT1Q9UGM3 2413 aaPredicted RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms