RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FAM168BA1KXE4 195 aa3.26□□□□□ -1.89
SCN1A-218ENST00000640036 FAM229BQ4G0N7 80 aa3.25□□□□□ -1.89
SCN1A-218ENST00000640036 XIRP2A4UGR9 3374 aa3.25□□□□□ -1.89
SCN1A-218ENST00000640036 GAS8-AS1O95177 125 aa3.25□□□□□ -1.89
SCN1A-218ENST00000640036 TLX1NBP0CAT3 122 aa3.25□□□□□ -1.89
SCN1A-218ENST00000640036 TENM1Q9UKZ4 2725 aa3.24□□□□□ -1.89
SCN1A-218ENST00000640036 DNAH14Q0VDD8 3507 aa3.24□□□□□ -1.89
SCN1A-218ENST00000640036 GIG44P09565 113 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-218ENST00000640036 KLKP1Q107X0 134 aa3.24□□□□□ -1.89
SCN1A-218ENST00000640036 IGLV8-61A0A075B6I0 122 aa3.24□□□□□ -1.89
SCN1A-218ENST00000640036 C15orf56Q8N910 161 aa3.23□□□□□ -1.89
SCN1A-218ENST00000640036 ITPR1Q14643 2758 aa3.23□□□□□ -1.89
SCN1A-218ENST00000640036 IGLV5-39A0A0G2JS06 123 aa3.23□□□□□ -1.89
SCN1A-218ENST00000640036 FAM104AQ969W3 186 aa3.23□□□□□ -1.89
SCN1A-218ENST00000640036 A0A1B0GVX0 72 aa3.22□□□□□ -1.89
SCN1A-218ENST00000640036 LINC01546A6NGU7 62 aa3.22□□□□□ -1.89
SCN1A-218ENST00000640036 K7EQZ3 153 aa3.22□□□□□ -1.89
SCN1A-218ENST00000640036 ANAPC11Q9NYG5 84 aa3.22□□□□□ -1.89
SCN1A-218ENST00000640036 IGLV5-45A0A087WSX0 123 aa3.22□□□□□ -1.89
SCN1A-218ENST00000640036 SPRR4Q96PI1 79 aa3.22□□□□□ -1.89
SCN1A-218ENST00000640036 A0A1W2PNN7 141 aa3.22□□□□□ -1.89
SCN1A-218ENST00000640036 KCNQ1DNQ9H478 68 aa3.21□□□□□ -1.9
SCN1A-218ENST00000640036 PLAC8Q9NZF1 115 aa3.21□□□□□ -1.9
SCN1A-218ENST00000640036 LAMA1P25391 3075 aa3.21□□□□□ -1.9
SCN1A-218ENST00000640036 DSCR10P59022 87 aa3.2□□□□□ -1.9
SCN1A-218ENST00000640036 ASB16-AS1Q495Z4 193 aa3.2□□□□□ -1.9
SCN1A-218ENST00000640036 Q8N1X5 172 aa3.2□□□□□ -1.9
SCN1A-218ENST00000640036 FP248Q71RG6 208 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-218ENST00000640036 CDH23Q9H251 3354 aa3.2□□□□□ -1.9
SCN1A-218ENST00000640036 TACC2O95359 2948 aa3.2□□□□□ -1.9
SCN1A-218ENST00000640036 VPS13AQ96RL7 3174 aa3.19□□□□□ -1.9
SCN1A-218ENST00000640036 KRTAP10-1P60331 282 aa3.19□□□□□ -1.9
SCN1A-218ENST00000640036 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-218ENST00000640036 ADAMTSL4-AS1Q5T5F5 129 aa3.19□□□□□ -1.9
SCN1A-218ENST00000640036 NBEAQ8NFP9 2946 aa3.19□□□□□ -1.9
SCN1A-218ENST00000640036 IGFL1Q6UW32 110 aa3.18□□□□□ -1.9
SCN1A-218ENST00000640036 C4orf26Q17RF5 130 aa3.18□□□□□ -1.9
SCN1A-218ENST00000640036 TENM3Q9P273 2699 aa3.18□□□□□ -1.9
SCN1A-218ENST00000640036 KRTAP10-2P60368 255 aa3.17□□□□□ -1.9
SCN1A-218ENST00000640036 IGLV5-48A0A075B6I7 105 aa3.17□□□□□ -1.9
SCN1A-218ENST00000640036 COL12A1Q99715 3063 aa3.16□□□□□ -1.9
SCN1A-218ENST00000640036 KALRNO60229 2985 aa3.16□□□□□ -1.9
SCN1A-218ENST00000640036 CSAG1Q6PB30 78 aa3.16□□□□□ -1.9
SCN1A-218ENST00000640036 COL6A3P12111 3177 aa3.16□□□□□ -1.9
SCN1A-218ENST00000640036 A0A1B0GU33 70 aa3.16□□□□□ -1.9
SCN1A-218ENST00000640036 PLAC4Q8WY50 150 aa3.16□□□□□ -1.9
SCN1A-218ENST00000640036 HTTP42858 3142 aa3.15□□□□□ -1.9
SCN1A-218ENST00000640036 TSPEAR-AS2P59090 65 aa3.15□□□□□ -1.91
SCN1A-218ENST00000640036 DMXL2Q8TDJ6 3036 aa3.15□□□□□ -1.91
SCN1A-218ENST00000640036 NBEAL2Q6ZNJ1 2754 aa3.14□□□□□ -1.91
SCN1A-218ENST00000640036 BRCA2P51587 3418 aa3.14□□□□□ -1.91
SCN1A-218ENST00000640036 NIPBLQ6KC79 2804 aaeCLIP3.14□□□□□ -1.91
SCN1A-218ENST00000640036 Q6ZR54 194 aa3.14□□□□□ -1.91
SCN1A-218ENST00000640036 NF1P21359 2839 aa3.14□□□□□ -1.91
SCN1A-218ENST00000640036 VCANP13611 3396 aa3.14□□□□□ -1.91
SCN1A-218ENST00000640036 Q75L30 129 aa3.13□□□□□ -1.91
SCN1A-218ENST00000640036 APCP25054 2843 aa3.13□□□□□ -1.91
SCN1A-218ENST00000640036 TNRC18O15417 2968 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-218ENST00000640036 LRBAP50851 2863 aa3.12□□□□□ -1.91
SCN1A-218ENST00000640036 PKD1L1Q8TDX9 2849 aa3.11□□□□□ -1.91
SCN1A-218ENST00000640036 CELSR3Q9NYQ7 3312 aa3.11□□□□□ -1.91
SCN1A-218ENST00000640036 BOD1L1Q8NFC6 3051 aa3.11□□□□□ -1.91
SCN1A-218ENST00000640036 SPINK7P58062 85 aa3.11□□□□□ -1.91
SCN1A-218ENST00000640036 UNC80Q8N2C7 3258 aa3.11□□□□□ -1.91
SCN1A-218ENST00000640036 A0A0D9SG42 100 aa3.11□□□□□ -1.91
SCN1A-218ENST00000640036 CELSR2Q9HCU4 2923 aa3.1□□□□□ -1.91
SCN1A-218ENST00000640036 R4GN34 69 aa3.1□□□□□ -1.91
SCN1A-218ENST00000640036 ZZEF1O43149 2961 aa3.1□□□□□ -1.91
SCN1A-218ENST00000640036 H1FX-AS1Q4G0G2 97 aa3.1□□□□□ -1.91
SCN1A-218ENST00000640036 S4R3F8 94 aa3.1□□□□□ -1.91
SCN1A-218ENST00000640036 WDFY3Q8IZQ1 3526 aa3.1□□□□□ -1.91
SCN1A-218ENST00000640036 SZT2Q5T011 3432 aa3.09□□□□□ -1.91
SCN1A-218ENST00000640036 KRTAP16-1A8MUX0 517 aa3.08□□□□□ -1.92
SCN1A-218ENST00000640036 Q8N377 158 aa3.08□□□□□ -1.92
SCN1A-218ENST00000640036 TENM2Q9NT68 2774 aa3.08□□□□□ -1.92
SCN1A-218ENST00000640036 FREM2Q5SZK8 3169 aa3.08□□□□□ -1.92
SCN1A-218ENST00000640036 ASH1LQ9NR48 2969 aaKnown RBP3.07□□□□□ -1.92
SCN1A-218ENST00000640036 ROMO1P60602 79 aa3.07□□□□□ -1.92
SCN1A-218ENST00000640036 LITAFQ99732 161 aa3.07□□□□□ -1.92
SCN1A-218ENST00000640036 KRTAP1-5Q9BYS1 174 aa3.07□□□□□ -1.92
SCN1A-218ENST00000640036 LINC01558Q9Y6Z2 57 aa3.06□□□□□ -1.92
SCN1A-218ENST00000640036 ATMQ13315 3056 aa3.06□□□□□ -1.92
SCN1A-218ENST00000640036 H3BS24 57 aa3.05□□□□□ -1.92
SCN1A-218ENST00000640036 RPL37P61927 97 aaKnown RBP3.05□□□□□ -1.92
SCN1A-218ENST00000640036 Q8N9P0 234 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-218ENST00000640036 A0A096LNJ9 63 aa3.04□□□□□ -1.92
SCN1A-218ENST00000640036 DCHS2Q6V1P9 2916 aa3.04□□□□□ -1.92
SCN1A-218ENST00000640036 MYO15AQ9UKN7 3530 aa3.04□□□□□ -1.92
SCN1A-218ENST00000640036 PRO0461Q9UI25 63 aa3.04□□□□□ -1.92
SCN1A-218ENST00000640036 ZCCHC13Q8WW36 166 aaKnown RBP3.04□□□□□ -1.92
SCN1A-218ENST00000640036 URB1-AS1Q96HZ7 61 aa3.03□□□□□ -1.92
SCN1A-218ENST00000640036 EYSQ5T1H1 3165 aa3.03□□□□□ -1.92
SCN1A-218ENST00000640036 FAM218AQ96MZ4 157 aa3.03□□□□□ -1.92
SCN1A-218ENST00000640036 DMXL1Q9Y485 3027 aa3.01□□□□□ -1.93
SCN1A-218ENST00000640036 A0A0G2JQZ4 141 aa3.01□□□□□ -1.93
SCN1A-218ENST00000640036 A0A1W2PNM2 257 aa2.99□□□□□ -1.93
SCN1A-218ENST00000640036 C20orf166-AS1Q96NR2 134 aa2.99□□□□□ -1.93
SCN1A-218ENST00000640036 SPEGQ15772 3267 aa2.99□□□□□ -1.93
SCN1A-218ENST00000640036 DCHS1Q96JQ0 3298 aa2.99□□□□□ -1.93
SCN1A-218ENST00000640036 M0QZ58 72 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 267.2 ms