RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 H1FX-AS1Q4G0G2 97 aa3.78□□□□□ -1.8
SCN1A-217ENST00000637988 M0QZ58 72 aa3.78□□□□□ -1.8
SCN1A-217ENST00000637988 ITPR2Q14571 2701 aa3.78□□□□□ -1.8
SCN1A-217ENST00000637988 A0A0A0MQY5 61 aa3.76□□□□□ -1.81
SCN1A-217ENST00000637988 A0A1W2PNM2 257 aa3.76□□□□□ -1.81
SCN1A-217ENST00000637988 PRO0461Q9UI25 63 aa3.76□□□□□ -1.81
SCN1A-217ENST00000637988 CEP350Q5VT06 3117 aa3.74□□□□□ -1.81
SCN1A-217ENST00000637988 GOLGB1Q14789 3259 aaKnown RBP3.74□□□□□ -1.81
SCN1A-217ENST00000637988 COL6A5A8TX70 2615 aa3.74□□□□□ -1.81
SCN1A-217ENST00000637988 KRTAP10-1P60331 282 aa3.73□□□□□ -1.81
SCN1A-217ENST00000637988 TEP1Q99973 2627 aaKnown RBP3.73□□□□□ -1.81
SCN1A-217ENST00000637988 CHD6Q8TD26 2715 aa3.72□□□□□ -1.81
SCN1A-217ENST00000637988 KRTAP21-3Q3LHN1 58 aa3.72□□□□□ -1.81
SCN1A-217ENST00000637988 ADM2Q7Z4H4 148 aa3.71□□□□□ -1.82
SCN1A-217ENST00000637988 C5orf42Q9H799 3197 aa3.7□□□□□ -1.82
SCN1A-217ENST00000637988 DNAH12Q6ZR08 3092 aa3.7□□□□□ -1.82
SCN1A-217ENST00000637988 KRTAP10-2P60368 255 aa3.7□□□□□ -1.82
SCN1A-217ENST00000637988 Q5W150 140 aa3.69□□□□□ -1.82
SCN1A-217ENST00000637988 NOTCH1P46531 2555 aa3.69□□□□□ -1.82
SCN1A-217ENST00000637988 RPL37P61927 97 aaKnown RBP3.68□□□□□ -1.82
SCN1A-217ENST00000637988 EIF4EBP3O60516 100 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-217ENST00000637988 ROMO1P60602 79 aa3.66□□□□□ -1.82
SCN1A-217ENST00000637988 STAB2Q8WWQ8 2551 aa3.65□□□□□ -1.82
SCN1A-217ENST00000637988 MMP24-AS1A0A0U1RRL7 71 aa3.65□□□□□ -1.82
SCN1A-217ENST00000637988 Q75L30 129 aa3.65□□□□□ -1.82
SCN1A-217ENST00000637988 RPS29P62273 56 aaKnown RBP3.65□□□□□ -1.82
SCN1A-217ENST00000637988 OCR1Q9BZK8 76 aa3.65□□□□□ -1.82
SCN1A-217ENST00000637988 Q8N9P0 234 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-217ENST00000637988 SPRR1BP22528 89 aa3.64□□□□□ -1.83
SCN1A-217ENST00000637988 SPRR1AP35321 89 aa3.64□□□□□ -1.83
SCN1A-217ENST00000637988 C20orf166-AS1Q96NR2 134 aa3.64□□□□□ -1.83
SCN1A-217ENST00000637988 ZNF292O60281 2723 aa3.62□□□□□ -1.83
SCN1A-217ENST00000637988 PANO1I0J062 215 aa3.62□□□□□ -1.83
SCN1A-217ENST00000637988 LINC00472Q9H8W2 130 aa3.61□□□□□ -1.83
SCN1A-217ENST00000637988 Q6ZR54 194 aa3.61□□□□□ -1.83
SCN1A-217ENST00000637988 A8MUU9 505 aa3.61□□□□□ -1.83
SCN1A-217ENST00000637988 KRTAP1-5Q9BYS1 174 aa3.61□□□□□ -1.83
SCN1A-217ENST00000637988 UTRNP46939 3433 aa3.6□□□□□ -1.83
SCN1A-217ENST00000637988 GCN1Q92616 2671 aaKnown RBP3.59□□□□□ -1.83
SCN1A-217ENST00000637988 LINC01558Q9Y6Z2 57 aa3.59□□□□□ -1.83
SCN1A-217ENST00000637988 IGSF10Q6WRI0 2623 aa3.59□□□□□ -1.84
SCN1A-217ENST00000637988 NSD1Q96L73 2696 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-217ENST00000637988 KRTAP26-1Q6PEX3 210 aa3.55□□□□□ -1.84
SCN1A-217ENST00000637988 TNP1P09430 55 aa3.55□□□□□ -1.84
SCN1A-217ENST00000637988 A0A087X002 238 aa3.54□□□□□ -1.84
SCN1A-217ENST00000637988 PRO2289Q9P1D8 64 aa3.54□□□□□ -1.84
SCN1A-217ENST00000637988 ASB16-AS1Q495Z4 193 aa3.54□□□□□ -1.84
SCN1A-217ENST00000637988 Q8NDZ9 215 aa3.54□□□□□ -1.84
SCN1A-217ENST00000637988 APCP25054 2843 aa3.53□□□□□ -1.84
SCN1A-217ENST00000637988 MAP1AP78559 2803 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-217ENST00000637988 PCNTO95613 3336 aa3.53□□□□□ -1.84
SCN1A-217ENST00000637988 CRYBG3Q68DQ2 2970 aa3.52□□□□□ -1.85
SCN1A-217ENST00000637988 SPATA8Q6RVD6 105 aa3.5□□□□□ -1.85
SCN1A-217ENST00000637988 CFAP54Q96N23 3096 aa3.49□□□□□ -1.85
SCN1A-217ENST00000637988 LAMA2P24043 3122 aaKnown RBP3.49□□□□□ -1.85
SCN1A-217ENST00000637988 A0A0C4DFX4 3053 aa3.49□□□□□ -1.85
SCN1A-217ENST00000637988 MGAQ8IWI9 3026 aa3.49□□□□□ -1.85
SCN1A-217ENST00000637988 KRTAP10-8P60410 259 aa3.47□□□□□ -1.85
SCN1A-217ENST00000637988 Q5XG85 94 aa3.46□□□□□ -1.85
SCN1A-217ENST00000637988 FRYQ5TBA9 3013 aa3.46□□□□□ -1.86
SCN1A-217ENST00000637988 TRANK1O15050 2925 aa3.45□□□□□ -1.86
SCN1A-217ENST00000637988 WDFY4Q6ZS81 3184 aa3.45□□□□□ -1.86
SCN1A-217ENST00000637988 P0C880 135 aa3.45□□□□□ -1.86
SCN1A-217ENST00000637988 Q5VV11 94 aa3.45□□□□□ -1.86
SCN1A-217ENST00000637988 Q6ZRN7 208 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-217ENST00000637988 UTP20O75691 2785 aaKnown RBP3.43□□□□□ -1.86
SCN1A-217ENST00000637988 KRTAP10-10P60014 251 aa3.42□□□□□ -1.86
SCN1A-217ENST00000637988 DSPP15924 2871 aaKnown RBP3.42□□□□□ -1.86
SCN1A-217ENST00000637988 PRAC1Q96KF2 57 aa3.42□□□□□ -1.86
SCN1A-217ENST00000637988 NBEAL2Q6ZNJ1 2754 aa3.42□□□□□ -1.86
SCN1A-217ENST00000637988 KRTAP4-16G5E9R7 235 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-217ENST00000637988 XIRP2A4UGR9 3374 aa3.41□□□□□ -1.86
SCN1A-217ENST00000637988 PRUNE2Q8WUY3 3088 aa3.41□□□□□ -1.86
SCN1A-217ENST00000637988 FLNCQ14315 2725 aa3.41□□□□□ -1.86
SCN1A-217ENST00000637988 PP632Q6XCG6 107 aa3.4□□□□□ -1.87
SCN1A-217ENST00000637988 C10orf95Q9H7T3 257 aa3.39□□□□□ -1.87
SCN1A-217ENST00000637988 TPRXLQ17RH7 258 aa3.39□□□□□ -1.87
SCN1A-217ENST00000637988 NOTCH2NLQ7Z3S9 236 aa3.39□□□□□ -1.87
SCN1A-217ENST00000637988 UBR5O95071 2799 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-217ENST00000637988 CHD7Q9P2D1 2997 aa3.39□□□□□ -1.87
SCN1A-217ENST00000637988 TENM1Q9UKZ4 2725 aa3.38□□□□□ -1.87
SCN1A-217ENST00000637988 CHD9Q3L8U1 2897 aa3.37□□□□□ -1.87
SCN1A-217ENST00000637988 KRTAP13-2Q52LG2 175 aa3.37□□□□□ -1.87
SCN1A-217ENST00000637988 A0A1B0GVY2 172 aa3.37□□□□□ -1.87
SCN1A-217ENST00000637988 KRTAP16-1A8MUX0 517 aa3.36□□□□□ -1.87
SCN1A-217ENST00000637988 MKI67P46013 3256 aaKnown RBP3.35□□□□□ -1.87
SCN1A-217ENST00000637988 USP34Q70CQ2 3546 aa3.35□□□□□ -1.87
SCN1A-217ENST00000637988 H3BS24 57 aa3.35□□□□□ -1.87
SCN1A-217ENST00000637988 KRTAP29-1A8MX34 341 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-217ENST00000637988 FRYLO94915 3013 aa3.34□□□□□ -1.87
SCN1A-217ENST00000637988 ITPR1Q14643 2758 aa3.34□□□□□ -1.87
SCN1A-217ENST00000637988 HTTP42858 3142 aa3.34□□□□□ -1.88
SCN1A-217ENST00000637988 XP32Q5T750 250 aa3.33□□□□□ -1.88
SCN1A-217ENST00000637988 LRBAP50851 2863 aa3.32□□□□□ -1.88
SCN1A-217ENST00000637988 VPS13AQ96RL7 3174 aa3.32□□□□□ -1.88
SCN1A-217ENST00000637988 TRIOO75962 3097 aa3.32□□□□□ -1.88
SCN1A-217ENST00000637988 KRTAP25-1Q3LHN0 102 aa3.32□□□□□ -1.88
SCN1A-217ENST00000637988 A8MU10 97 aa3.31□□□□□ -1.88
SCN1A-217ENST00000637988 HIVEP1P15822 2718 aa3.31□□□□□ -1.88
SCN1A-217ENST00000637988 KRTAP13-1Q8IUC0 172 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms