RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 ERC2-IT1O76042 136 aa11.49□□□□□ -0.57
CLN3-263ENST00000637871 C1orf137Q5JT78 98 aa11.49□□□□□ -0.57
CLN3-263ENST00000637871 ST20-AS1Q8NBB2 130 aa11.49□□□□□ -0.57
CLN3-263ENST00000637871 NREPQ16612 68 aa11.48□□□□□ -0.57
CLN3-263ENST00000637871 CHTF8P0CG12 524 aa11.47□□□□□ -0.57
CLN3-263ENST00000637871 PHF5AQ7RTV0 110 aaKnown RBP11.47□□□□□ -0.57
CLN3-263ENST00000637871 C3orf22Q8N5N4 141 aa11.46□□□□□ -0.57
CLN3-263ENST00000637871 IGLV8-61A0A075B6I0 122 aa11.46□□□□□ -0.58
CLN3-263ENST00000637871 COX7CP15954 63 aa11.46□□□□□ -0.58
CLN3-263ENST00000637871 Q8NBF4 154 aa11.46□□□□□ -0.58
CLN3-263ENST00000637871 SPACA4Q8TDM5 124 aa11.46□□□□□ -0.58
CLN3-263ENST00000637871 SPRR1BP22528 89 aa11.45□□□□□ -0.58
CLN3-263ENST00000637871 DPH3Q96FX2 82 aa11.45□□□□□ -0.58
CLN3-263ENST00000637871 SPRR4Q96PI1 79 aa11.45□□□□□ -0.58
CLN3-263ENST00000637871 A0A087WVE0 104 aa11.44□□□□□ -0.58
CLN3-263ENST00000637871 CCDC179H3BU77 68 aa11.44□□□□□ -0.58
CLN3-263ENST00000637871 SMIM29Q86T20 159 aa11.44□□□□□ -0.58
CLN3-263ENST00000637871 SMIM20Q8N5G0 67 aa11.43□□□□□ -0.58
CLN3-263ENST00000637871 SERP2Q8N6R1 65 aa11.43□□□□□ -0.58
CLN3-263ENST00000637871 UBE2AP49459 152 aa11.42□□□□□ -0.58
CLN3-263ENST00000637871 PRLHP81277 87 aa11.42□□□□□ -0.58
CLN3-263ENST00000637871 HIGD2AQ9BW72 106 aa11.42□□□□□ -0.58
CLN3-263ENST00000637871 DYNC1H1Q14204 4646 aaKnown RBP11.42□□□□□ -0.58
CLN3-263ENST00000637871 A0A1W2PNM2 257 aa11.41□□□□□ -0.58
CLN3-263ENST00000637871 IGLV5-52A0A0A0MRZ9 124 aa11.39□□□□□ -0.59
CLN3-263ENST00000637871 CRYGAP11844 174 aa11.38□□□□□ -0.59
CLN3-263ENST00000637871 LRP1BQ9NZR2 4599 aa11.38□□□□□ -0.59
CLN3-263ENST00000637871 BPY2O14599 106 aa11.37□□□□□ -0.59
CLN3-263ENST00000637871 C9orf153Q5TBE3 101 aa11.36□□□□□ -0.59
CLN3-263ENST00000637871 KRTAP13-1Q8IUC0 172 aa11.35□□□□□ -0.59
CLN3-263ENST00000637871 KRTAP11-1Q8IUC1 163 aa11.35□□□□□ -0.59
CLN3-263ENST00000637871 PLAC8Q9NZF1 115 aa11.35□□□□□ -0.59
CLN3-263ENST00000637871 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.35□□□□□ -0.59
CLN3-263ENST00000637871 PANO1I0J062 215 aa11.34□□□□□ -0.59
CLN3-263ENST00000637871 KRTAP10-1P60331 282 aa11.32□□□□□ -0.6
CLN3-263ENST00000637871 IGFL1Q6UW32 110 aa11.31□□□□□ -0.6
CLN3-263ENST00000637871 TRAV7A0A075B6U4 112 aa11.31□□□□□ -0.6
CLN3-263ENST00000637871 ZNF706Q9Y5V0 76 aaPredicted RBP11.31□□□□□ -0.6
CLN3-263ENST00000637871 DNAH8Q96JB1 4490 aa11.29□□□□□ -0.6
CLN3-263ENST00000637871 BIRC6Q9NR09 4857 aa11.28□□□□□ -0.6
CLN3-263ENST00000637871 RPL37AP61513 92 aaKnown RBP11.28□□□□□ -0.6
CLN3-263ENST00000637871 SCXQ7RTU7 201 aa11.27□□□□□ -0.6
CLN3-263ENST00000637871 APOBP04114 4563 aaKnown RBP11.27□□□□□ -0.6
CLN3-263ENST00000637871 IGKV4-1P06312 121 aa11.27□□□□□ -0.61
CLN3-263ENST00000637871 FAM30AQ9NZY2 134 aa11.25□□□□□ -0.61
CLN3-263ENST00000637871 LINC00483Q53H64 154 aa11.23□□□□□ -0.61
CLN3-263ENST00000637871 KIAA1109Q2LD37 5005 aa11.21□□□□□ -0.62
CLN3-263ENST00000637871 ZNF861PO60384 105 aa11.2□□□□□ -0.62
CLN3-263ENST00000637871 PSORS1C2Q9UIG4 136 aa11.2□□□□□ -0.62
CLN3-263ENST00000637871 A0A087WSZ3 146 aa11.17□□□□□ -0.62
CLN3-263ENST00000637871 Q6ZSA8 131 aa11.17□□□□□ -0.62
CLN3-263ENST00000637871 RYR1P21817 5038 aa11.16□□□□□ -0.62
CLN3-263ENST00000637871 HSPG2P98160 4391 aa11.16□□□□□ -0.62
CLN3-263ENST00000637871 SS18L2Q9UHA2 77 aa11.16□□□□□ -0.62
CLN3-263ENST00000637871 DSCR10P59022 87 aa11.15□□□□□ -0.62
CLN3-263ENST00000637871 TMEM258P61165 79 aa11.13□□□□□ -0.63
CLN3-263ENST00000637871 Q8N9L7 120 aa11.13□□□□□ -0.63
CLN3-263ENST00000637871 J3KT08 172 aa11.12□□□□□ -0.63
CLN3-263ENST00000637871 KLKP1Q107X0 134 aa11.11□□□□□ -0.63
CLN3-263ENST00000637871 CIRBP-AS1Q8TBR5 109 aa11.11□□□□□ -0.63
CLN3-263ENST00000637871 IGLV7-43P04211 117 aa11.09□□□□□ -0.63
CLN3-263ENST00000637871 C20orf197Q8N268 126 aa11.09□□□□□ -0.63
CLN3-263ENST00000637871 NDUFC1O43677 76 aa11.09□□□□□ -0.63
CLN3-263ENST00000637871 CDK2AP2O75956 126 aa11.09□□□□□ -0.63
CLN3-263ENST00000637871 OCR1Q9BZK8 76 aa11.09□□□□□ -0.63
CLN3-263ENST00000637871 A0A0G2JQZ4 141 aa11.08□□□□□ -0.64
CLN3-263ENST00000637871 K7EQZ3 153 aa11.06□□□□□ -0.64
CLN3-263ENST00000637871 SMR3BP02814 79 aaPredicted RBP11.06□□□□□ -0.64
CLN3-263ENST00000637871 KRTAP17-1Q9BYP8 105 aa11.06□□□□□ -0.64
CLN3-263ENST00000637871 LINC00472Q9H8W2 130 aa11.06□□□□□ -0.64
CLN3-263ENST00000637871 HCG22E2RYF7 251 aa11.06□□□□□ -0.64
CLN3-263ENST00000637871 FAT1Q14517 4588 aa11.05□□□□□ -0.64
CLN3-263ENST00000637871 IGLV9-49A0A0B4J1Y8 123 aa11.04□□□□□ -0.64
CLN3-263ENST00000637871 A8MWP4 228 aa11.02□□□□□ -0.64
CLN3-263ENST00000637871 HERC2O95714 4834 aa11.02□□□□□ -0.65
CLN3-263ENST00000637871 PRR15Q8IV56 129 aa11.01□□□□□ -0.65
CLN3-263ENST00000637871 NDUFB1O75438 58 aa11□□□□□ -0.65
CLN3-263ENST00000637871 RPS28P62857 69 aaKnown RBP11□□□□□ -0.65
CLN3-263ENST00000637871 TMEM254Q8TBM7 123 aa10.99□□□□□ -0.65
CLN3-263ENST00000637871 CYSTM1Q9H1C7 97 aa10.98□□□□□ -0.65
CLN3-263ENST00000637871 CD164Q04900 197 aa10.98□□□□□ -0.65
CLN3-263ENST00000637871 SSBP3-AS1Q7Z2R9 100 aa10.98□□□□□ -0.65
CLN3-263ENST00000637871 MOBPQ13875 183 aa10.97□□□□□ -0.65
CLN3-263ENST00000637871 H7BZZ5 65 aa10.95□□□□□ -0.66
CLN3-263ENST00000637871 C5orf47Q569G3 176 aa10.95□□□□□ -0.66
CLN3-263ENST00000637871 VPS13BQ7Z7G8 4022 aa10.95□□□□□ -0.66
CLN3-263ENST00000637871 DEFB116Q30KQ4 102 aa10.95□□□□□ -0.66
CLN3-263ENST00000637871 A0A0U1RQV1 116 aa10.93□□□□□ -0.66
CLN3-263ENST00000637871 ATP5EP56381 51 aaPredicted RBP10.93□□□□□ -0.66
CLN3-263ENST00000637871 KRTAP29-1A8MX34 341 aaPredicted RBP10.92□□□□□ -0.66
CLN3-263ENST00000637871 SNURFQ9Y675 71 aa10.91□□□□□ -0.66
CLN3-263ENST00000637871 Q5VSD8 79 aa10.91□□□□□ -0.66
CLN3-263ENST00000637871 Q8N1X5 172 aa10.91□□□□□ -0.66
CLN3-263ENST00000637871 FAM229BQ4G0N7 80 aa10.9□□□□□ -0.66
CLN3-263ENST00000637871 CASC2Q6XLA1 102 aa10.9□□□□□ -0.66
CLN3-263ENST00000637871 KRTAP4-5Q9BYR2 181 aa10.9□□□□□ -0.66
CLN3-263ENST00000637871 FAM236DA0A1B0GTK5 79 aa10.89□□□□□ -0.67
CLN3-263ENST00000637871 FAM236CP0DP71 79 aa10.89□□□□□ -0.67
CLN3-263ENST00000637871 Q96NJ1 140 aa10.88□□□□□ -0.67
CLN3-263ENST00000637871 SRRM2Q9UQ35 2752 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms