RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SSBP3-AS1Q7Z2R9 100 aa7.75□□□□□ -1.17
CLN3-249ENST00000636685 TRBV20-1A0A075B6N2 111 aa7.74□□□□□ -1.17
CLN3-249ENST00000636685 A4D1N5 150 aa7.74□□□□□ -1.17
CLN3-249ENST00000636685 GAGE2AQ6NT46 116 aa7.74□□□□□ -1.17
CLN3-249ENST00000636685 ERG28Q9UKR5 140 aa7.74□□□□□ -1.17
CLN3-249ENST00000636685 K7ERU9 68 aa7.73□□□□□ -1.17
CLN3-249ENST00000636685 LITAFQ99732 161 aa7.73□□□□□ -1.17
CLN3-249ENST00000636685 KRTAP9-8Q9BYQ0 159 aa7.73□□□□□ -1.17
CLN3-249ENST00000636685 OCIAD2Q56VL3 154 aa7.72□□□□□ -1.17
CLN3-249ENST00000636685 LOC107984156A0A0G2JMH3 177 aa7.71□□□□□ -1.18
CLN3-249ENST00000636685 SCGB1C2P0DMR2 95 aa7.71□□□□□ -1.18
CLN3-249ENST00000636685 SFTA2Q6UW10 78 aa7.71□□□□□ -1.18
CLN3-249ENST00000636685 ARL17AQ8IVW1 177 aa7.71□□□□□ -1.18
CLN3-249ENST00000636685 CBY1Q9Y3M2 126 aa7.71□□□□□ -1.18
CLN3-249ENST00000636685 ADAMTSL4-AS1Q5T5F5 129 aa7.7□□□□□ -1.18
CLN3-249ENST00000636685 PSMB2P49721 201 aa7.69□□□□□ -1.18
CLN3-249ENST00000636685 ZNF625Q96I27 306 aaPredicted RBP7.69□□□□□ -1.18
CLN3-249ENST00000636685 H3BMG7 143 aa7.68□□□□□ -1.18
CLN3-249ENST00000636685 COX6CP09669 75 aa7.67□□□□□ -1.18
CLN3-249ENST00000636685 MEIG1Q5JSS6 88 aa7.67□□□□□ -1.18
CLN3-249ENST00000636685 J3QR89 54 aa7.66□□□□□ -1.18
CLN3-249ENST00000636685 IGLV6-57P01721 117 aa7.66□□□□□ -1.18
CLN3-249ENST00000636685 LINC00308Q8TCZ7 52 aa7.66□□□□□ -1.18
CLN3-249ENST00000636685 PRYO14603 147 aa7.65□□□□□ -1.18
CLN3-249ENST00000636685 LCE2BO14633 110 aa7.65□□□□□ -1.18
CLN3-249ENST00000636685 ERC2-IT1O76042 136 aa7.65□□□□□ -1.18
CLN3-249ENST00000636685 Q1RN00 199 aa7.65□□□□□ -1.18
CLN3-249ENST00000636685 Q6Q795 121 aa7.65□□□□□ -1.18
CLN3-249ENST00000636685 PRO0461Q9UI25 63 aa7.65□□□□□ -1.18
CLN3-249ENST00000636685 ETDCA0A1B0GVM5 59 aa7.64□□□□□ -1.19
CLN3-249ENST00000636685 EIF4EBP3O60516 100 aaPredicted RBP7.64□□□□□ -1.19
CLN3-249ENST00000636685 SPRR1AP35321 89 aa7.64□□□□□ -1.19
CLN3-249ENST00000636685 C9orf153Q5TBE3 101 aa7.64□□□□□ -1.19
CLN3-249ENST00000636685 TCL1BO95988 128 aa7.63□□□□□ -1.19
CLN3-249ENST00000636685 ATXN8Q156A1 80 aa7.63□□□□□ -1.19
CLN3-249ENST00000636685 H7C2G1 150 aa7.62□□□□□ -1.19
CLN3-249ENST00000636685 RPL37P61927 97 aaKnown RBP7.62□□□□□ -1.19
CLN3-249ENST00000636685 LINC00158P58513 81 aa7.61□□□□□ -1.19
CLN3-249ENST00000636685 NPC2P61916 151 aa7.61□□□□□ -1.19
CLN3-249ENST00000636685 COX17Q14061 63 aa7.61□□□□□ -1.19
CLN3-249ENST00000636685 VPS25Q9BRG1 176 aa7.61□□□□□ -1.19
CLN3-249ENST00000636685 TRAV13-2A0A0B4J235 113 aa7.6□□□□□ -1.19
CLN3-249ENST00000636685 KCNQ1DNQ9H478 68 aa7.6□□□□□ -1.19
CLN3-249ENST00000636685 A0A0U1RRA0 63 aa7.59□□□□□ -1.19
CLN3-249ENST00000636685 ETDBQ3ZM63 59 aa7.59□□□□□ -1.19
CLN3-249ENST00000636685 HRCT1Q6UXD1 115 aa7.59□□□□□ -1.19
CLN3-249ENST00000636685 TRIAP1O43715 76 aa7.58□□□□□ -1.2
CLN3-249ENST00000636685 SMCPP49901 116 aaPredicted RBP7.58□□□□□ -1.2
CLN3-249ENST00000636685 LIMD2Q9BT23 127 aa7.58□□□□□ -1.2
CLN3-249ENST00000636685 B5MCH6 92 aa7.57□□□□□ -1.2
CLN3-249ENST00000636685 NCR3O14931 201 aa7.57□□□□□ -1.2
CLN3-249ENST00000636685 KRTAP6-3Q3LI67 103 aa7.57□□□□□ -1.2
CLN3-249ENST00000636685 SOSTDC1Q6X4U4 206 aa7.57□□□□□ -1.2
CLN3-249ENST00000636685 MIR7-3HGQ8N6C7 128 aa7.57□□□□□ -1.2
CLN3-249ENST00000636685 TRBV10-2A0A0K0K1G8 114 aa7.56□□□□□ -1.2
CLN3-249ENST00000636685 C9JAW5 83 aa7.56□□□□□ -1.2
CLN3-249ENST00000636685 TEN1Q86WV5 123 aa7.56□□□□□ -1.2
CLN3-249ENST00000636685 PPDPFLQ8WWR9 84 aa7.56□□□□□ -1.2
CLN3-249ENST00000636685 Q9BRP9 147 aa7.56□□□□□ -1.2
CLN3-249ENST00000636685 MT2AP02795 61 aa7.55□□□□□ -1.2
CLN3-249ENST00000636685 ANKRD29Q8N6D5 301 aa7.55□□□□□ -1.2
CLN3-249ENST00000636685 TRBV10-3A0A0K0K1G6 114 aa7.54□□□□□ -1.2
CLN3-249ENST00000636685 LST1O00453 97 aa7.54□□□□□ -1.2
CLN3-249ENST00000636685 H3BT86 120 aa7.53□□□□□ -1.2
CLN3-249ENST00000636685 MTURNQ8N3F0 131 aa7.53□□□□□ -1.2
CLN3-249ENST00000636685 H0YGX0 51 aa7.51□□□□□ -1.21
CLN3-249ENST00000636685 KRTAP9-3Q9BYQ3 159 aa7.51□□□□□ -1.21
CLN3-249ENST00000636685 NEBP20929 6669 aa7.5□□□□□ -1.21
CLN3-249ENST00000636685 NDUFC2O95298 119 aa7.5□□□□□ -1.21
CLN3-249ENST00000636685 TRACP01848 142 aa7.5□□□□□ -1.21
CLN3-249ENST00000636685 MT1FP04733 61 aa7.5□□□□□ -1.21
CLN3-249ENST00000636685 ST20-AS1Q8NBB2 130 aa7.49□□□□□ -1.21
CLN3-249ENST00000636685 CLEC2BQ92478 149 aa7.49□□□□□ -1.21
CLN3-249ENST00000636685 Q6ZRX8 168 aa7.48□□□□□ -1.21
CLN3-249ENST00000636685 SIGMAR1Q99720 223 aa7.48□□□□□ -1.21
CLN3-249ENST00000636685 LINC00846Q9NV44 126 aa7.48□□□□□ -1.21
CLN3-249ENST00000636685 KRTAP19-6Q3LI70 58 aa7.47□□□□□ -1.21
CLN3-249ENST00000636685 OR13C6PQ8NH95 151 aa7.47□□□□□ -1.21
CLN3-249ENST00000636685 SMIM11BQ8TCY0 68 aa7.46□□□□□ -1.22
CLN3-249ENST00000636685 SNCGO76070 127 aa7.44□□□□□ -1.22
CLN3-249ENST00000636685 C1orf195Q5TG92 126 aa7.44□□□□□ -1.22
CLN3-249ENST00000636685 A0A1B0GX51 115 aa7.43□□□□□ -1.22
CLN3-249ENST00000636685 BAALC-AS2P0C853 105 aa7.43□□□□□ -1.22
CLN3-249ENST00000636685 PCP4P48539 62 aa7.43□□□□□ -1.22
CLN3-249ENST00000636685 SCGB1A1P11684 91 aa7.42□□□□□ -1.22
CLN3-249ENST00000636685 KRTAP10-10P60014 251 aa7.42□□□□□ -1.22
CLN3-249ENST00000636685 MUC12Q9UKN1 5478 aa7.41□□□□□ -1.22
CLN3-249ENST00000636685 DNAL4O96015 105 aa7.4□□□□□ -1.22
CLN3-249ENST00000636685 TEX49A0A1B0GTD5 131 aa7.39□□□□□ -1.23
CLN3-249ENST00000636685 ACYP1P07311 99 aa7.39□□□□□ -1.23
CLN3-249ENST00000636685 S100A7L2Q5SY68 101 aa7.39□□□□□ -1.23
CLN3-249ENST00000636685 FAM218AQ96MZ4 157 aa7.38□□□□□ -1.23
CLN3-249ENST00000636685 FAM240AA0A1B0GVK7 77 aa7.37□□□□□ -1.23
CLN3-249ENST00000636685 CD164Q04900 197 aa7.37□□□□□ -1.23
CLN3-249ENST00000636685 SPRR1BP22528 89 aa7.36□□□□□ -1.23
CLN3-249ENST00000636685 KRTAP20-1Q3LI63 56 aa7.36□□□□□ -1.23
CLN3-249ENST00000636685 Q5XG85 94 aa7.36□□□□□ -1.23
CLN3-249ENST00000636685 H3BQ85 93 aa7.35□□□□□ -1.23
CLN3-249ENST00000636685 ATP11AUNQ6ZP68 121 aa7.35□□□□□ -1.23
CLN3-249ENST00000636685 SMIM29Q86T20 159 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 122.9 ms