RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 C12orf57Q99622 126 aa8.66□□□□□ -1.02
CLN3-246ENST00000636228 UQCR10Q9UDW1 63 aa8.66□□□□□ -1.02
CLN3-246ENST00000636228 CFC1BP0CG36 223 aa8.65□□□□□ -1.02
CLN3-246ENST00000636228 COPS9Q8WXC6 57 aa8.65□□□□□ -1.02
CLN3-246ENST00000636228 MUSTN1Q8IVN3 82 aa8.64□□□□□ -1.03
CLN3-246ENST00000636228 LORP23490 312 aaPredicted RBP8.63□□□□□ -1.03
CLN3-246ENST00000636228 KRTAP10-6P60371 365 aaPredicted RBP8.63□□□□□ -1.03
CLN3-246ENST00000636228 A6NDN8 102 aa8.62□□□□□ -1.03
CLN3-246ENST00000636228 HIST1H4GQ99525 98 aa8.62□□□□□ -1.03
CLN3-246ENST00000636228 TRBV7-6A0A0J9YX20 115 aa8.61□□□□□ -1.03
CLN3-246ENST00000636228 Q5XG85 94 aa8.61□□□□□ -1.03
CLN3-246ENST00000636228 IGLV5-48A0A075B6I7 105 aa8.6□□□□□ -1.03
CLN3-246ENST00000636228 A0A1B0GWB2 263 aa8.6□□□□□ -1.03
CLN3-246ENST00000636228 M0R2T5 61 aa8.6□□□□□ -1.03
CLN3-246ENST00000636228 RPL37P61927 97 aaKnown RBP8.6□□□□□ -1.03
CLN3-246ENST00000636228 A4D1N5 150 aa8.58□□□□□ -1.04
CLN3-246ENST00000636228 TSTD3H0UI37 97 aa8.57□□□□□ -1.04
CLN3-246ENST00000636228 HSD52Q0P140 79 aa8.57□□□□□ -1.04
CLN3-246ENST00000636228 COX6B2Q6YFQ2 88 aa8.56□□□□□ -1.04
CLN3-246ENST00000636228 CEND1Q8N111 149 aa8.56□□□□□ -1.04
CLN3-246ENST00000636228 SMIM11BQ8TCY0 68 aa8.54□□□□□ -1.04
CLN3-246ENST00000636228 FXYD2P54710 66 aa8.53□□□□□ -1.04
CLN3-246ENST00000636228 FLGP20930 4061 aaPredicted RBP8.53□□□□□ -1.04
CLN3-246ENST00000636228 TCL1BO95988 128 aa8.52□□□□□ -1.05
CLN3-246ENST00000636228 TRAV13-2A0A0B4J235 113 aa8.51□□□□□ -1.05
CLN3-246ENST00000636228 TMEM238LA0A1B0GVL6 79 aa8.5□□□□□ -1.05
CLN3-246ENST00000636228 A6NJY4 79 aa8.5□□□□□ -1.05
CLN3-246ENST00000636228 CFC1P0CG37 223 aa8.5□□□□□ -1.05
CLN3-246ENST00000636228 A0A0B4J2C4 111 aa8.49□□□□□ -1.05
CLN3-246ENST00000636228 NHP2Q9NX24 153 aaKnown RBP8.49□□□□□ -1.05
CLN3-246ENST00000636228 F8WEM9 126 aa8.47□□□□□ -1.05
CLN3-246ENST00000636228 BVES-AS1Q5T3Y7 98 aa8.47□□□□□ -1.05
CLN3-246ENST00000636228 M0R143 59 aa8.45□□□□□ -1.06
CLN3-246ENST00000636228 Q6Q795 121 aa8.45□□□□□ -1.06
CLN3-246ENST00000636228 LINC00575Q6W349 94 aa8.45□□□□□ -1.06
CLN3-246ENST00000636228 RAB37Q96AX2 223 aa8.45□□□□□ -1.06
CLN3-246ENST00000636228 Q6ZQY7 126 aa8.44□□□□□ -1.06
CLN3-246ENST00000636228 VAMP3Q15836 100 aa8.43□□□□□ -1.06
CLN3-246ENST00000636228 IGFL1Q6UW32 110 aa8.43□□□□□ -1.06
CLN3-246ENST00000636228 OBSCN-AS1Q96MR7 158 aa8.43□□□□□ -1.06
CLN3-246ENST00000636228 PRO1854Q9UHT4 67 aa8.43□□□□□ -1.06
CLN3-246ENST00000636228 TRBV7-7A0A0K0K1E9 115 aa8.42□□□□□ -1.06
CLN3-246ENST00000636228 K7ERJ3 54 aa8.42□□□□□ -1.06
CLN3-246ENST00000636228 hADV29S1A0JD25 119 aa8.41□□□□□ -1.06
CLN3-246ENST00000636228 OCIAD2Q56VL3 154 aa8.4□□□□□ -1.06
CLN3-246ENST00000636228 Q6JHZ5 121 aa8.4□□□□□ -1.06
CLN3-246ENST00000636228 ATP11AUNQ6ZP68 121 aa8.4□□□□□ -1.06
CLN3-246ENST00000636228 CLEC2BQ92478 149 aa8.4□□□□□ -1.06
CLN3-246ENST00000636228 Q75L30 129 aa8.37□□□□□ -1.07
CLN3-246ENST00000636228 H3BUT2 72 aa8.35□□□□□ -1.07
CLN3-246ENST00000636228 BATFQ16520 125 aa8.35□□□□□ -1.07
CLN3-246ENST00000636228 Q96NJ1 140 aa8.35□□□□□ -1.07
CLN3-246ENST00000636228 LST1O00453 97 aa8.33□□□□□ -1.08
CLN3-246ENST00000636228 TRIAP1O43715 76 aa8.33□□□□□ -1.08
CLN3-246ENST00000636228 SNHG12Q9BXW3 62 aa8.33□□□□□ -1.08
CLN3-246ENST00000636228 PCP4L1A6NKN8 68 aa8.32□□□□□ -1.08
CLN3-246ENST00000636228 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.32□□□□□ -1.08
CLN3-246ENST00000636228 USH2AO75445 5202 aa8.31□□□□□ -1.08
CLN3-246ENST00000636228 H0YGX0 51 aa8.3□□□□□ -1.08
CLN3-246ENST00000636228 PSMB2P49721 201 aa8.29□□□□□ -1.08
CLN3-246ENST00000636228 FAM218AQ96MZ4 157 aa8.28□□□□□ -1.08
CLN3-246ENST00000636228 SSPOA2VEC9 5147 aa8.27□□□□□ -1.08
CLN3-246ENST00000636228 TAX1BP3O14907 124 aa8.26□□□□□ -1.09
CLN3-246ENST00000636228 COX6CP09669 75 aa8.26□□□□□ -1.09
CLN3-246ENST00000636228 PPDPFLQ8WWR9 84 aa8.26□□□□□ -1.09
CLN3-246ENST00000636228 KRTAP9-8Q9BYQ0 159 aa8.26□□□□□ -1.09
CLN3-246ENST00000636228 A0A1B0GX51 115 aa8.25□□□□□ -1.09
CLN3-246ENST00000636228 C20orf166-AS1Q96NR2 134 aa8.25□□□□□ -1.09
CLN3-246ENST00000636228 NAA38Q9BRA0 125 aaKnown RBP8.25□□□□□ -1.09
CLN3-246ENST00000636228 A8MUU9 505 aa8.23□□□□□ -1.09
CLN3-246ENST00000636228 COL5A1-AS1Q5SY13 56 aa8.23□□□□□ -1.09
CLN3-246ENST00000636228 C9orf118A6NHY6 69 aa8.22□□□□□ -1.09
CLN3-246ENST00000636228 SCGB1C2P0DMR2 95 aa8.22□□□□□ -1.09
CLN3-246ENST00000636228 A0A087WSZ3 146 aa8.21□□□□□ -1.1
CLN3-246ENST00000636228 SS18L2Q9UHA2 77 aa8.21□□□□□ -1.1
CLN3-246ENST00000636228 SNCGO76070 127 aa8.2□□□□□ -1.1
CLN3-246ENST00000636228 NDUFV3P56181 108 aaKnown RBP8.2□□□□□ -1.1
CLN3-246ENST00000636228 DSCR10P59022 87 aa8.2□□□□□ -1.1
CLN3-246ENST00000636228 TRBV20-1A0A075B6N2 111 aa8.19□□□□□ -1.1
CLN3-246ENST00000636228 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.19□□□□□ -1.1
CLN3-246ENST00000636228 TEN1Q86WV5 123 aa8.19□□□□□ -1.1
CLN3-246ENST00000636228 TRACP01848 142 aa8.18□□□□□ -1.1
CLN3-246ENST00000636228 LYRM7Q5U5X0 104 aa8.18□□□□□ -1.1
CLN3-246ENST00000636228 A0A1W2PPM0 123 aa8.17□□□□□ -1.1
CLN3-246ENST00000636228 KRTAP9-7A8MTY7 169 aa8.17□□□□□ -1.1
CLN3-246ENST00000636228 KRTAP16-1A8MUX0 517 aa8.17□□□□□ -1.1
CLN3-246ENST00000636228 H3BMG7 143 aa8.15□□□□□ -1.1
CLN3-246ENST00000636228 DNAL4O96015 105 aa8.15□□□□□ -1.1
CLN3-246ENST00000636228 ATXN8Q156A1 80 aa8.14□□□□□ -1.11
CLN3-246ENST00000636228 FABP2P12104 132 aa8.13□□□□□ -1.11
CLN3-246ENST00000636228 SIGMAR1Q99720 223 aa8.13□□□□□ -1.11
CLN3-246ENST00000636228 ORMDL1Q9P0S3 153 aa8.13□□□□□ -1.11
CLN3-246ENST00000636228 A0A1W2PNM2 257 aa8.12□□□□□ -1.11
CLN3-246ENST00000636228 GHRHP01286 108 aa8.12□□□□□ -1.11
CLN3-246ENST00000636228 MT2AP02795 61 aa8.12□□□□□ -1.11
CLN3-246ENST00000636228 FAM236DA0A1B0GTK5 79 aa8.1□□□□□ -1.11
CLN3-246ENST00000636228 H3BQ85 93 aa8.1□□□□□ -1.11
CLN3-246ENST00000636228 FAM236CP0DP71 79 aa8.1□□□□□ -1.11
CLN3-246ENST00000636228 FCGBPQ9Y6R7 5405 aaPredicted RBP8.1□□□□□ -1.11
CLN3-246ENST00000636228 SPCS1Q9Y6A9 102 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms