RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 K7EP13 123 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 SPART-AS1P0CW21 52 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 FGF7P21781 194 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 VAMP8Q9BV40 100 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 PRO3102Q9H379 93 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 CUL7Q14999 1698 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 CRYBG1Q9Y4K1 1723 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 NAIPQ13075 1403 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 MLH3Q9UHC1 1453 aa-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 TARBP1Q13395 1621 aaKnown RBP-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 MMP24-AS1A0A0U1RRL7 71 aa-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 NAP1L6A6NFF2 107 aa-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 MT-ATP8P03928 68 aa-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 CD52P31358 61 aa-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 ATP5EP56381 51 aaPredicted RBP-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 PP6455Q8WZ26 134 aa-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 KTN1Q86UP2 1357 aaKnown RBP-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 CLASP1Q7Z460 1538 aa-1.5□□□□□ -2.65
SCN1A-208ENST00000625916 KIF20BQ96Q89 1820 aa-1.51□□□□□ -2.65
SCN1A-208ENST00000625916 AKAIN1P0CW23 69 aa-1.51□□□□□ -2.65
SCN1A-208ENST00000625916 NMSQ5H8A3 153 aa-1.51□□□□□ -2.65
SCN1A-208ENST00000625916 PSENENQ9NZ42 101 aa-1.51□□□□□ -2.65
SCN1A-208ENST00000625916 VPS8Q8N3P4 1428 aa-1.51□□□□□ -2.65
SCN1A-208ENST00000625916 CHD1O14646 1710 aa-1.52□□□□□ -2.65
SCN1A-208ENST00000625916 CRYM-AS1A6NIL9 109 aa-1.52□□□□□ -2.65
SCN1A-208ENST00000625916 TMEM262E9PQX1 116 aa-1.52□□□□□ -2.65
SCN1A-208ENST00000625916 NDUFA3O95167 84 aa-1.52□□□□□ -2.65
SCN1A-208ENST00000625916 HMGA1P17096 107 aaKnown RBP-1.52□□□□□ -2.65
SCN1A-208ENST00000625916 LOC105371267A0A1B0GV96 52 aa-1.53□□□□□ -2.65
SCN1A-208ENST00000625916 TMEM131LA2VDJ0 1609 aa-1.53□□□□□ -2.65
SCN1A-208ENST00000625916 CUX1P39880 1505 aa-1.53□□□□□ -2.65
SCN1A-208ENST00000625916 POLR1AO95602 1720 aaPredicted RBP-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 MON2Q7Z3U7 1717 aa-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 SHPRHQ149N8 1683 aa-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 BAZ1AQ9NRL2 1556 aaPredicted RBP-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 LRRC7Q96NW7 1537 aa-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 RAPGEF2Q9Y4G8 1499 aa-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 H7BZZ5 65 aa-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 CGREF1Q99674 301 aa-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 C4AP0C0L4 1744 aa-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 C4BP0C0L5 1744 aa-1.54□□□□□ -2.66
SCN1A-208ENST00000625916 GLI2P10070 1586 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 MAPKBP1O60336 1514 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 ZFYVE16Q7Z3T8 1539 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 DUOX2Q9NRD8 1548 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 SNAPC5O75971 98 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 PKD1L3Q7Z443 1732 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 NRAPQ86VF7 1730 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 UBR1Q8IWV7 1749 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 PARP4Q9UKK3 1724 aaKnown RBP-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 LMO7Q8WWI1 1683 aa-1.55□□□□□ -2.66
SCN1A-208ENST00000625916 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.56□□□□□ -2.66
SCN1A-208ENST00000625916 PSMG4Q5JS54 123 aa-1.56□□□□□ -2.66
SCN1A-208ENST00000625916 C1orf54Q8WWF1 131 aa-1.56□□□□□ -2.66
SCN1A-208ENST00000625916 AP4S1Q9Y587 144 aa-1.56□□□□□ -2.66
SCN1A-208ENST00000625916 USP32Q8NFA0 1604 aa-1.56□□□□□ -2.66
SCN1A-208ENST00000625916 TOPAZ1Q8N9V7 1692 aa-1.57□□□□□ -2.66
SCN1A-208ENST00000625916 NDUFA2O43678 99 aa-1.57□□□□□ -2.66
SCN1A-208ENST00000625916 KRTDAPP60985 99 aa-1.57□□□□□ -2.66
SCN1A-208ENST00000625916 CCDC58Q4VC31 144 aa-1.57□□□□□ -2.66
SCN1A-208ENST00000625916 SVBPQ8N300 66 aa-1.57□□□□□ -2.66
SCN1A-208ENST00000625916 CACFD1Q9UGQ2 172 aa-1.57□□□□□ -2.66
SCN1A-208ENST00000625916 DNMBPQ6XZF7 1577 aa-1.57□□□□□ -2.66
SCN1A-208ENST00000625916 C5P01031 1676 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 SAMD9Q5K651 1589 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 IGLV5-48A0A075B6I7 105 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 TRBV25-1A0A075B6N4 114 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 hADV29S1A0JD25 119 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 PMCHL1Q16048 86 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 TRPM2O94759 1503 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 MAGI3Q5TCQ9 1506 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 TEX14Q8IWB6 1497 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 ABCC5O15440 1437 aa-1.58□□□□□ -2.66
SCN1A-208ENST00000625916 IGLC2P0DOY2 106 aa-1.59□□□□□ -2.66
SCN1A-208ENST00000625916 IGLC3P0DOY3 106 aa-1.59□□□□□ -2.66
SCN1A-208ENST00000625916 DEFB133Q30KQ1 61 aa-1.59□□□□□ -2.66
SCN1A-208ENST00000625916 NRXN1Q9ULB1 1477 aa-1.59□□□□□ -2.66
SCN1A-208ENST00000625916 PREX1Q8TCU6 1659 aa-1.59□□□□□ -2.66
SCN1A-208ENST00000625916 SCN11AQ9UI33 1791 aa-1.59□□□□□ -2.66
SCN1A-208ENST00000625916 ARHGAP5Q13017 1502 aa-1.6□□□□□ -2.67
SCN1A-208ENST00000625916 H3BQ15 152 aa-1.6□□□□□ -2.67
SCN1A-208ENST00000625916 IER3IP1Q9Y5U9 82 aa-1.6□□□□□ -2.67
SCN1A-208ENST00000625916 MADDQ8WXG6 1647 aa-1.6□□□□□ -2.67
SCN1A-208ENST00000625916 CD163L1Q9NR16 1453 aa-1.61□□□□□ -2.67
SCN1A-208ENST00000625916 TMEM218A2RU14 115 aa-1.61□□□□□ -2.67
SCN1A-208ENST00000625916 COX7BP24311 80 aa-1.61□□□□□ -2.67
SCN1A-208ENST00000625916 QSER1Q2KHR3 1735 aa-1.61□□□□□ -2.67
SCN1A-208ENST00000625916 MYOM2P54296 1465 aa-1.62□□□□□ -2.67
SCN1A-208ENST00000625916 EIF4G3O43432 1585 aaKnown RBP-1.62□□□□□ -2.67
SCN1A-208ENST00000625916 PEG3Q9GZU2 1588 aa-1.62□□□□□ -2.67
SCN1A-208ENST00000625916 RPS27LQ71UM5 84 aaKnown RBP-1.62□□□□□ -2.67
SCN1A-208ENST00000625916 TRGV9Q99603 122 aa-1.62□□□□□ -2.67
SCN1A-208ENST00000625916 SCRIBQ14160 1630 aa-1.62□□□□□ -2.67
SCN1A-208ENST00000625916 ROCK2O75116 1388 aaKnown RBP-1.63□□□□□ -2.67
SCN1A-208ENST00000625916 CC2D2AQ9P2K1 1620 aa-1.63□□□□□ -2.67
SCN1A-208ENST00000625916 SPHKAPQ2M3C7 1700 aa-1.63□□□□□ -2.67
SCN1A-208ENST00000625916 PLCH1Q4KWH8 1693 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 A0A1B0GUL6 1792 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 FAM135AQ9P2D6 1515 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 D6R8Y8 96 aa-1.64□□□□□ -2.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms