RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 MGAM2Q2M2H8 2515 aa9.37□□□□□ -0.91
PDLIM2-220ENST00000622226 KRTAP1-1Q07627 177 aa9.37□□□□□ -0.91
PDLIM2-220ENST00000622226 HECTD1Q9ULT8 2610 aa9.34□□□□□ -0.91
PDLIM2-220ENST00000622226 H1FX-AS1Q4G0G2 97 aa9.34□□□□□ -0.92
PDLIM2-220ENST00000622226 SPATA8Q6RVD6 105 aa9.34□□□□□ -0.92
PDLIM2-220ENST00000622226 EPG5Q9HCE0 2579 aa9.3□□□□□ -0.92
PDLIM2-220ENST00000622226 LINC00472Q9H8W2 130 aa9.29□□□□□ -0.92
PDLIM2-220ENST00000622226 Q5VSD8 79 aa9.29□□□□□ -0.92
PDLIM2-220ENST00000622226 M0QZ58 72 aa9.26□□□□□ -0.93
PDLIM2-220ENST00000622226 XIRP2A4UGR9 3374 aa9.24□□□□□ -0.93
PDLIM2-220ENST00000622226 MKI67P46013 3256 aaKnown RBP9.24□□□□□ -0.93
PDLIM2-220ENST00000622226 FLNBO75369 2602 aaKnown RBP9.21□□□□□ -0.93
PDLIM2-220ENST00000622226 ATRQ13535 2644 aa9.2□□□□□ -0.94
PDLIM2-220ENST00000622226 SPRR1AP35321 89 aa9.18□□□□□ -0.94
PDLIM2-220ENST00000622226 KRTAP26-1Q6PEX3 210 aa9.17□□□□□ -0.94
PDLIM2-220ENST00000622226 NDUFAF8A1L188 74 aa9.16□□□□□ -0.94
PDLIM2-220ENST00000622226 BRCA2P51587 3418 aa9.16□□□□□ -0.94
PDLIM2-220ENST00000622226 ADM2Q7Z4H4 148 aa9.15□□□□□ -0.95
PDLIM2-220ENST00000622226 PLAC4Q8WY50 150 aa9.11□□□□□ -0.95
PDLIM2-220ENST00000622226 PLAC8Q9NZF1 115 aa9.11□□□□□ -0.95
PDLIM2-220ENST00000622226 DMBT1Q9UGM3 2413 aaPredicted RBP9.11□□□□□ -0.95
PDLIM2-220ENST00000622226 KRTAP25-1Q3LHN0 102 aa9.1□□□□□ -0.95
PDLIM2-220ENST00000622226 C20orf166-AS1Q96NR2 134 aa9.08□□□□□ -0.96
PDLIM2-220ENST00000622226 A8MU10 97 aa9.08□□□□□ -0.96
PDLIM2-220ENST00000622226 LAMA3Q16787 3333 aa9.07□□□□□ -0.96
PDLIM2-220ENST00000622226 CFAP54Q96N23 3096 aa9.07□□□□□ -0.96
PDLIM2-220ENST00000622226 ASB16-AS1Q495Z4 193 aa9.07□□□□□ -0.96
PDLIM2-220ENST00000622226 AKAP13Q12802 2813 aa9.07□□□□□ -0.96
PDLIM2-220ENST00000622226 A6NN06 94 aa9.07□□□□□ -0.96
PDLIM2-220ENST00000622226 SPRR1BP22528 89 aa9.06□□□□□ -0.96
PDLIM2-220ENST00000622226 LCE6AA0A183 80 aa9.06□□□□□ -0.96
PDLIM2-220ENST00000622226 MAST4O15021 2626 aa9.04□□□□□ -0.96
PDLIM2-220ENST00000622226 Q6ZR54 194 aa9.03□□□□□ -0.96
PDLIM2-220ENST00000622226 KRTAP10-2P60368 255 aa9.02□□□□□ -0.97
PDLIM2-220ENST00000622226 PRUNE2Q8WUY3 3088 aa9□□□□□ -0.97
PDLIM2-220ENST00000622226 FREM2Q5SZK8 3169 aa8.98□□□□□ -0.97
PDLIM2-220ENST00000622226 KRTAP10-1P60331 282 aa8.98□□□□□ -0.97
PDLIM2-220ENST00000622226 KRTAP29-1A8MX34 341 aaPredicted RBP8.95□□□□□ -0.98
PDLIM2-220ENST00000622226 A0A087X002 238 aa8.94□□□□□ -0.98
PDLIM2-220ENST00000622226 SEC61BP60468 96 aaKnown RBP8.94□□□□□ -0.98
PDLIM2-220ENST00000622226 NOTCH2NLQ7Z3S9 236 aa8.94□□□□□ -0.98
PDLIM2-220ENST00000622226 NBEAL1Q6ZS30 2694 aa8.94□□□□□ -0.98
PDLIM2-220ENST00000622226 ITPR3Q14573 2671 aa8.94□□□□□ -0.98
PDLIM2-220ENST00000622226 A0A0C4DFX4 3053 aa8.93□□□□□ -0.98
PDLIM2-220ENST00000622226 LAMA2P24043 3122 aaKnown RBP8.93□□□□□ -0.98
PDLIM2-220ENST00000622226 PANO1I0J062 215 aa8.93□□□□□ -0.98
PDLIM2-220ENST00000622226 KRTAP1-5Q9BYS1 174 aa8.93□□□□□ -0.98
PDLIM2-220ENST00000622226 CDH23Q9H251 3354 aa8.9□□□□□ -0.98
PDLIM2-220ENST00000622226 RANBP2P49792 3224 aaKnown RBP8.89□□□□□ -0.99
PDLIM2-220ENST00000622226 HELZ2Q9BYK8 2649 aaKnown RBP8.89□□□□□ -0.99
PDLIM2-220ENST00000622226 STAB1Q9NY15 2570 aa8.89□□□□□ -0.99
PDLIM2-220ENST00000622226 STAB2Q8WWQ8 2551 aa8.89□□□□□ -0.99
PDLIM2-220ENST00000622226 CELSR3Q9NYQ7 3312 aa8.88□□□□□ -0.99
PDLIM2-220ENST00000622226 CHD6Q8TD26 2715 aa8.87□□□□□ -0.99
PDLIM2-220ENST00000622226 FLNAP21333 2647 aaKnown RBP8.86□□□□□ -0.99
PDLIM2-220ENST00000622226 CFAP46Q8IYW2 2715 aa8.84□□□□□ -0.99
PDLIM2-220ENST00000622226 CHD7Q9P2D1 2997 aa8.83□□□□□ -1
PDLIM2-220ENST00000622226 C10orf95Q9H7T3 257 aa8.82□□□□□ -1
PDLIM2-220ENST00000622226 SZT2Q5T011 3432 aa8.78□□□□□ -1
PDLIM2-220ENST00000622226 KRTAP4-16G5E9R7 235 aaPredicted RBP8.78□□□□□ -1
PDLIM2-220ENST00000622226 A8MUU9 505 aa8.77□□□□□ -1.01
PDLIM2-220ENST00000622226 UNC80Q8N2C7 3258 aa8.76□□□□□ -1.01
PDLIM2-220ENST00000622226 NOTCH1P46531 2555 aa8.71□□□□□ -1.01
PDLIM2-220ENST00000622226 CENPEQ02224 2701 aa8.7□□□□□ -1.02
PDLIM2-220ENST00000622226 TRIOO75962 3097 aa8.7□□□□□ -1.02
PDLIM2-220ENST00000622226 BAHCC1Q9P281 2608 aa8.7□□□□□ -1.02
PDLIM2-220ENST00000622226 DNAH14Q0VDD8 3507 aa8.69□□□□□ -1.02
PDLIM2-220ENST00000622226 TEP1Q99973 2627 aaKnown RBP8.69□□□□□ -1.02
PDLIM2-220ENST00000622226 MGAQ8IWI9 3026 aa8.68□□□□□ -1.02
PDLIM2-220ENST00000622226 WDFY4Q6ZS81 3184 aa8.67□□□□□ -1.02
PDLIM2-220ENST00000622226 HTTP42858 3142 aa8.66□□□□□ -1.02
PDLIM2-220ENST00000622226 UNC79Q9P2D8 2635 aa8.65□□□□□ -1.02
PDLIM2-220ENST00000622226 KRTAP11-1Q8IUC1 163 aa8.64□□□□□ -1.03
PDLIM2-220ENST00000622226 SETXQ7Z333 2677 aaKnown RBP8.64□□□□□ -1.03
PDLIM2-220ENST00000622226 TEX15Q9BXT5 2789 aa8.61□□□□□ -1.03
PDLIM2-220ENST00000622226 GCN1Q92616 2671 aaKnown RBP8.61□□□□□ -1.03
PDLIM2-220ENST00000622226 CRYBG3Q68DQ2 2970 aa8.6□□□□□ -1.03
PDLIM2-220ENST00000622226 COL6A3P12111 3177 aa8.58□□□□□ -1.04
PDLIM2-220ENST00000622226 TNP1P09430 55 aa8.57□□□□□ -1.04
PDLIM2-220ENST00000622226 VPS13AQ96RL7 3174 aa8.56□□□□□ -1.04
PDLIM2-220ENST00000622226 VCANP13611 3396 aa8.56□□□□□ -1.04
PDLIM2-220ENST00000622226 NBEAL2Q6ZNJ1 2754 aa8.54□□□□□ -1.04
PDLIM2-220ENST00000622226 COL6A5A8TX70 2615 aa8.51□□□□□ -1.05
PDLIM2-220ENST00000622226 FRYQ5TBA9 3013 aa8.51□□□□□ -1.05
PDLIM2-220ENST00000622226 SPEGQ15772 3267 aa8.46□□□□□ -1.06
PDLIM2-220ENST00000622226 KRTAP7-1Q8IUC3 87 aa8.45□□□□□ -1.06
PDLIM2-220ENST00000622226 CFAP47Q6ZTR5 3102 aa8.43□□□□□ -1.06
PDLIM2-220ENST00000622226 REV3LO60673 3130 aa8.42□□□□□ -1.06
PDLIM2-220ENST00000622226 MAP1AP78559 2803 aaPredicted RBP8.42□□□□□ -1.06
PDLIM2-220ENST00000622226 A0A1B0GVY2 172 aa8.41□□□□□ -1.06
PDLIM2-220ENST00000622226 KRTAP13-2Q52LG2 175 aa8.41□□□□□ -1.06
PDLIM2-220ENST00000622226 CHD9Q3L8U1 2897 aa8.38□□□□□ -1.07
PDLIM2-220ENST00000622226 KRTAP10-8P60410 259 aa8.37□□□□□ -1.07
PDLIM2-220ENST00000622226 SPTBN5Q9NRC6 3674 aaKnown RBP8.34□□□□□ -1.07
PDLIM2-220ENST00000622226 NSD1Q96L73 2696 aaPredicted RBP8.32□□□□□ -1.08
PDLIM2-220ENST00000622226 P0C880 135 aa8.32□□□□□ -1.08
PDLIM2-220ENST00000622226 KALRNO60229 2985 aa8.3□□□□□ -1.08
PDLIM2-220ENST00000622226 RPS29P62273 56 aaKnown RBP8.3□□□□□ -1.08
PDLIM2-220ENST00000622226 DSPP15924 2871 aaKnown RBP8.3□□□□□ -1.08
PDLIM2-220ENST00000622226 DMXL2Q8TDJ6 3036 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms