RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 KRTAP29-1A8MX34 341 aaPredicted RBP12.26□□□□□ -0.45
PDLIM3-212ENST00000620787 NDUFB1O75438 58 aa12.26□□□□□ -0.45
PDLIM3-212ENST00000620787 TRAV22A0A0B4J277 110 aa12.24□□□□□ -0.45
PDLIM3-212ENST00000620787 IGKV2-24A0A0C4DH68 120 aa12.24□□□□□ -0.45
PDLIM3-212ENST00000620787 C16orf90A8MZG2 172 aa12.23□□□□□ -0.45
PDLIM3-212ENST00000620787 MP68P56378 58 aa12.23□□□□□ -0.45
PDLIM3-212ENST00000620787 C1orf195Q5TG92 126 aa12.22□□□□□ -0.45
PDLIM3-212ENST00000620787 MAST4O15021 2626 aa12.22□□□□□ -0.45
PDLIM3-212ENST00000620787 UBE2AP49459 152 aa12.21□□□□□ -0.45
PDLIM3-212ENST00000620787 LINC00208Q96KT6 92 aa12.2□□□□□ -0.46
PDLIM3-212ENST00000620787 DNAH10Q8IVF4 4471 aa12.2□□□□□ -0.46
PDLIM3-212ENST00000620787 STAB1Q9NY15 2570 aa12.18□□□□□ -0.46
PDLIM3-212ENST00000620787 PSPHP1O15172 72 aa12.18□□□□□ -0.46
PDLIM3-212ENST00000620787 KRTAP24-1Q3LI83 254 aa12.18□□□□□ -0.46
PDLIM3-212ENST00000620787 CNBPP62633 177 aaKnown RBP12.18□□□□□ -0.46
PDLIM3-212ENST00000620787 KRTAP11-1Q8IUC1 163 aa12.17□□□□□ -0.46
PDLIM3-212ENST00000620787 CASC2Q6XLA1 102 aa12.16□□□□□ -0.46
PDLIM3-212ENST00000620787 PRR15Q8IV56 129 aa12.16□□□□□ -0.46
PDLIM3-212ENST00000620787 KRTAP1-5Q9BYS1 174 aa12.16□□□□□ -0.46
PDLIM3-212ENST00000620787 H0Y9P7 68 aa12.15□□□□□ -0.46
PDLIM3-212ENST00000620787 B9D2Q9BPU9 175 aa12.15□□□□□ -0.46
PDLIM3-212ENST00000620787 PRB2P02812 416 aaPredicted RBP12.15□□□□□ -0.46
PDLIM3-212ENST00000620787 NOTCH1P46531 2555 aa12.15□□□□□ -0.47
PDLIM3-212ENST00000620787 SPRR1BP22528 89 aa12.14□□□□□ -0.47
PDLIM3-212ENST00000620787 HUWE1Q7Z6Z7 4374 aaKnown RBP12.14□□□□□ -0.47
PDLIM3-212ENST00000620787 LINC00472Q9H8W2 130 aa12.14□□□□□ -0.47
PDLIM3-212ENST00000620787 A8MWP4 228 aa12.13□□□□□ -0.47
PDLIM3-212ENST00000620787 PHF5AQ7RTV0 110 aaKnown RBP12.13□□□□□ -0.47
PDLIM3-212ENST00000620787 H3BPC8 53 aa12.12□□□□□ -0.47
PDLIM3-212ENST00000620787 SPANXA2-OT1Q8N9U9 137 aa12.12□□□□□ -0.47
PDLIM3-212ENST00000620787 SRRM2Q9UQ35 2752 aaKnown RBP12.12□□□□□ -0.47
PDLIM3-212ENST00000620787 FBN1P35555 2871 aaKnown RBP12.12□□□□□ -0.47
PDLIM3-212ENST00000620787 H0Y9J4 135 aa12.1□□□□□ -0.47
PDLIM3-212ENST00000620787 CHTF8P0CG12 524 aa12.1□□□□□ -0.47
PDLIM3-212ENST00000620787 V9GYY9 64 aa12.08□□□□□ -0.47
PDLIM3-212ENST00000620787 DNAH9Q9NYC9 4486 aa12.08□□□□□ -0.48
PDLIM3-212ENST00000620787 A8MUN3 132 aa12.08□□□□□ -0.48
PDLIM3-212ENST00000620787 LYSTQ99698 3801 aa12.07□□□□□ -0.48
PDLIM3-212ENST00000620787 C9orf163Q8N9P6 203 aa12.05□□□□□ -0.48
PDLIM3-212ENST00000620787 NBEAL1Q6ZS30 2694 aa12.05□□□□□ -0.48
PDLIM3-212ENST00000620787 MMP24-AS1A0A0U1RRL7 71 aa12.03□□□□□ -0.48
PDLIM3-212ENST00000620787 Q5VV11 94 aa12.03□□□□□ -0.48
PDLIM3-212ENST00000620787 K7EIL1 84 aa12.01□□□□□ -0.49
PDLIM3-212ENST00000620787 Q8N9P0 234 aaPredicted RBP12□□□□□ -0.49
PDLIM3-212ENST00000620787 C14orf177Q52M58 125 aa11.99□□□□□ -0.49
PDLIM3-212ENST00000620787 COL6A5A8TX70 2615 aa11.98□□□□□ -0.49
PDLIM3-212ENST00000620787 TENM2Q9NT68 2774 aa11.96□□□□□ -0.49
PDLIM3-212ENST00000620787 KRTAP13-1Q8IUC0 172 aa11.96□□□□□ -0.5
PDLIM3-212ENST00000620787 LIMD2Q9BT23 127 aa11.94□□□□□ -0.5
PDLIM3-212ENST00000620787 A8MU10 97 aa11.94□□□□□ -0.5
PDLIM3-212ENST00000620787 Q96NJ1 140 aa11.93□□□□□ -0.5
PDLIM3-212ENST00000620787 UBE2DNLQ8IWF7 75 aa11.93□□□□□ -0.5
PDLIM3-212ENST00000620787 IGLV7-46A0A075B6I9 117 aa11.92□□□□□ -0.5
PDLIM3-212ENST00000620787 PMAIP1Q13794 54 aa11.91□□□□□ -0.5
PDLIM3-212ENST00000620787 ASB16-AS1Q495Z4 193 aa11.91□□□□□ -0.5
PDLIM3-212ENST00000620787 PANO1I0J062 215 aa11.91□□□□□ -0.5
PDLIM3-212ENST00000620787 COA5Q86WW8 74 aa11.91□□□□□ -0.5
PDLIM3-212ENST00000620787 PRR15LQ9BU68 103 aa11.89□□□□□ -0.51
PDLIM3-212ENST00000620787 APLNQ9ULZ1 77 aa11.89□□□□□ -0.51
PDLIM3-212ENST00000620787 CHKB-CPT1BH3BT56 60 aa11.88□□□□□ -0.51
PDLIM3-212ENST00000620787 STAB2Q8WWQ8 2551 aa11.86□□□□□ -0.51
PDLIM3-212ENST00000620787 COL7A1Q02388 2944 aa11.86□□□□□ -0.51
PDLIM3-212ENST00000620787 MOBPQ13875 183 aa11.86□□□□□ -0.51
PDLIM3-212ENST00000620787 IGLV9-49A0A0B4J1Y8 123 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 CSMD3Q7Z407 3707 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 CD164Q04900 197 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 PCOTHQ58A44 107 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 TP53AIP1Q9HCN2 124 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 DNAH7Q8WXX0 4024 aa11.84□□□□□ -0.51
PDLIM3-212ENST00000620787 C8orf17Q9NRJ1 99 aa11.84□□□□□ -0.51
PDLIM3-212ENST00000620787 SEC61GP60059 68 aa11.83□□□□□ -0.52
PDLIM3-212ENST00000620787 DYNC2H1Q8NCM8 4307 aaKnown RBP11.83□□□□□ -0.52
PDLIM3-212ENST00000620787 Q6ZR54 194 aa11.82□□□□□ -0.52
PDLIM3-212ENST00000620787 LOC101927531A0A1B0GV80 90 aa11.81□□□□□ -0.52
PDLIM3-212ENST00000620787 Q75L30 129 aa11.81□□□□□ -0.52
PDLIM3-212ENST00000620787 LINC00483Q53H64 154 aa11.79□□□□□ -0.52
PDLIM3-212ENST00000620787 Q6ZRN7 208 aaPredicted RBP11.77□□□□□ -0.52
PDLIM3-212ENST00000620787 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.77□□□□□ -0.53
PDLIM3-212ENST00000620787 A0A1B0GVX0 72 aa11.76□□□□□ -0.53
PDLIM3-212ENST00000620787 SPACA4Q8TDM5 124 aa11.76□□□□□ -0.53
PDLIM3-212ENST00000620787 IGHV6-1A0A0B4J1U7 121 aa11.76□□□□□ -0.53
PDLIM3-212ENST00000620787 NBDYA0A0U1RRE5 68 aa11.75□□□□□ -0.53
PDLIM3-212ENST00000620787 LCA10Q71F78 164 aa11.75□□□□□ -0.53
PDLIM3-212ENST00000620787 NDUFS5O43920 106 aa11.72□□□□□ -0.53
PDLIM3-212ENST00000620787 WWC2-AS2Q96NR7 200 aa11.72□□□□□ -0.53
PDLIM3-212ENST00000620787 PLECQ15149 4684 aaKnown RBP11.72□□□□□ -0.53
PDLIM3-212ENST00000620787 A6NED7 52 aa11.71□□□□□ -0.54
PDLIM3-212ENST00000620787 PLAC8Q9NZF1 115 aa11.71□□□□□ -0.54
PDLIM3-212ENST00000620787 MRPL34Q9BQ48 92 aaKnown RBP11.7□□□□□ -0.54
PDLIM3-212ENST00000620787 LINC01558Q9Y6Z2 57 aa11.7□□□□□ -0.54
PDLIM3-212ENST00000620787 A0A087X002 238 aa11.69□□□□□ -0.54
PDLIM3-212ENST00000620787 NOTCH2NLQ7Z3S9 236 aa11.69□□□□□ -0.54
PDLIM3-212ENST00000620787 MGAM2Q2M2H8 2515 aa11.68□□□□□ -0.54
PDLIM3-212ENST00000620787 SPAG11AQ6PDA7 123 aa11.68□□□□□ -0.54
PDLIM3-212ENST00000620787 HRES1P13985 223 aa11.68□□□□□ -0.54
PDLIM3-212ENST00000620787 ZNF706Q9Y5V0 76 aaPredicted RBP11.68□□□□□ -0.54
PDLIM3-212ENST00000620787 CDK2AP2O75956 126 aa11.67□□□□□ -0.54
PDLIM3-212ENST00000620787 ATP11AUNQ6ZP68 121 aa11.66□□□□□ -0.54
PDLIM3-212ENST00000620787 SPTSSBQ8NFR3 76 aa11.66□□□□□ -0.54
PDLIM3-212ENST00000620787 ANAPC11Q9NYG5 84 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms