RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 KRTAP29-1A8MX34 341 aaPredicted RBP12.26□□□□□ -0.45
PDLIM3-212ENST00000620787 NDUFB1O75438 58 aa12.26□□□□□ -0.45
PDLIM3-212ENST00000620787 TRAV22A0A0B4J277 110 aa12.24□□□□□ -0.45
PDLIM3-212ENST00000620787 IGKV2-24A0A0C4DH68 120 aa12.24□□□□□ -0.45
PDLIM3-212ENST00000620787 C16orf90A8MZG2 172 aa12.23□□□□□ -0.45
PDLIM3-212ENST00000620787 MP68P56378 58 aa12.23□□□□□ -0.45
PDLIM3-212ENST00000620787 C1orf195Q5TG92 126 aa12.22□□□□□ -0.45
PDLIM3-212ENST00000620787 MAST4O15021 2626 aa12.22□□□□□ -0.45
PDLIM3-212ENST00000620787 UBE2AP49459 152 aa12.21□□□□□ -0.45
PDLIM3-212ENST00000620787 LINC00208Q96KT6 92 aa12.2□□□□□ -0.46
PDLIM3-212ENST00000620787 DNAH10Q8IVF4 4471 aa12.2□□□□□ -0.46
PDLIM3-212ENST00000620787 STAB1Q9NY15 2570 aa12.18□□□□□ -0.46
PDLIM3-212ENST00000620787 PSPHP1O15172 72 aa12.18□□□□□ -0.46
PDLIM3-212ENST00000620787 KRTAP24-1Q3LI83 254 aa12.18□□□□□ -0.46
PDLIM3-212ENST00000620787 CNBPP62633 177 aaKnown RBP12.18□□□□□ -0.46
PDLIM3-212ENST00000620787 KRTAP11-1Q8IUC1 163 aa12.17□□□□□ -0.46
PDLIM3-212ENST00000620787 CASC2Q6XLA1 102 aa12.16□□□□□ -0.46
PDLIM3-212ENST00000620787 PRR15Q8IV56 129 aa12.16□□□□□ -0.46
PDLIM3-212ENST00000620787 KRTAP1-5Q9BYS1 174 aa12.16□□□□□ -0.46
PDLIM3-212ENST00000620787 H0Y9P7 68 aa12.15□□□□□ -0.46
PDLIM3-212ENST00000620787 B9D2Q9BPU9 175 aa12.15□□□□□ -0.46
PDLIM3-212ENST00000620787 PRB2P02812 416 aaPredicted RBP12.15□□□□□ -0.46
PDLIM3-212ENST00000620787 NOTCH1P46531 2555 aa12.15□□□□□ -0.47
PDLIM3-212ENST00000620787 SPRR1BP22528 89 aa12.14□□□□□ -0.47
PDLIM3-212ENST00000620787 HUWE1Q7Z6Z7 4374 aaKnown RBP12.14□□□□□ -0.47
PDLIM3-212ENST00000620787 LINC00472Q9H8W2 130 aa12.14□□□□□ -0.47
PDLIM3-212ENST00000620787 A8MWP4 228 aa12.13□□□□□ -0.47
PDLIM3-212ENST00000620787 PHF5AQ7RTV0 110 aaKnown RBP12.13□□□□□ -0.47
PDLIM3-212ENST00000620787 H3BPC8 53 aa12.12□□□□□ -0.47
PDLIM3-212ENST00000620787 SPANXA2-OT1Q8N9U9 137 aa12.12□□□□□ -0.47
PDLIM3-212ENST00000620787 SRRM2Q9UQ35 2752 aaKnown RBP12.12□□□□□ -0.47
PDLIM3-212ENST00000620787 FBN1P35555 2871 aaKnown RBP12.12□□□□□ -0.47
PDLIM3-212ENST00000620787 H0Y9J4 135 aa12.1□□□□□ -0.47
PDLIM3-212ENST00000620787 CHTF8P0CG12 524 aa12.1□□□□□ -0.47
PDLIM3-212ENST00000620787 V9GYY9 64 aa12.08□□□□□ -0.47
PDLIM3-212ENST00000620787 DNAH9Q9NYC9 4486 aa12.08□□□□□ -0.48
PDLIM3-212ENST00000620787 A8MUN3 132 aa12.08□□□□□ -0.48
PDLIM3-212ENST00000620787 LYSTQ99698 3801 aa12.07□□□□□ -0.48
PDLIM3-212ENST00000620787 C9orf163Q8N9P6 203 aa12.05□□□□□ -0.48
PDLIM3-212ENST00000620787 NBEAL1Q6ZS30 2694 aa12.05□□□□□ -0.48
PDLIM3-212ENST00000620787 MMP24-AS1A0A0U1RRL7 71 aa12.03□□□□□ -0.48
PDLIM3-212ENST00000620787 Q5VV11 94 aa12.03□□□□□ -0.48
PDLIM3-212ENST00000620787 K7EIL1 84 aa12.01□□□□□ -0.49
PDLIM3-212ENST00000620787 Q8N9P0 234 aaPredicted RBP12□□□□□ -0.49
PDLIM3-212ENST00000620787 C14orf177Q52M58 125 aa11.99□□□□□ -0.49
PDLIM3-212ENST00000620787 COL6A5A8TX70 2615 aa11.98□□□□□ -0.49
PDLIM3-212ENST00000620787 TENM2Q9NT68 2774 aa11.96□□□□□ -0.49
PDLIM3-212ENST00000620787 KRTAP13-1Q8IUC0 172 aa11.96□□□□□ -0.5
PDLIM3-212ENST00000620787 LIMD2Q9BT23 127 aa11.94□□□□□ -0.5
PDLIM3-212ENST00000620787 A8MU10 97 aa11.94□□□□□ -0.5
PDLIM3-212ENST00000620787 Q96NJ1 140 aa11.93□□□□□ -0.5
PDLIM3-212ENST00000620787 UBE2DNLQ8IWF7 75 aa11.93□□□□□ -0.5
PDLIM3-212ENST00000620787 IGLV7-46A0A075B6I9 117 aa11.92□□□□□ -0.5
PDLIM3-212ENST00000620787 PMAIP1Q13794 54 aa11.91□□□□□ -0.5
PDLIM3-212ENST00000620787 ASB16-AS1Q495Z4 193 aa11.91□□□□□ -0.5
PDLIM3-212ENST00000620787 PANO1I0J062 215 aa11.91□□□□□ -0.5
PDLIM3-212ENST00000620787 COA5Q86WW8 74 aa11.91□□□□□ -0.5
PDLIM3-212ENST00000620787 PRR15LQ9BU68 103 aa11.89□□□□□ -0.51
PDLIM3-212ENST00000620787 APLNQ9ULZ1 77 aa11.89□□□□□ -0.51
PDLIM3-212ENST00000620787 CHKB-CPT1BH3BT56 60 aa11.88□□□□□ -0.51
PDLIM3-212ENST00000620787 STAB2Q8WWQ8 2551 aa11.86□□□□□ -0.51
PDLIM3-212ENST00000620787 COL7A1Q02388 2944 aa11.86□□□□□ -0.51
PDLIM3-212ENST00000620787 MOBPQ13875 183 aa11.86□□□□□ -0.51
PDLIM3-212ENST00000620787 IGLV9-49A0A0B4J1Y8 123 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 CSMD3Q7Z407 3707 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 CD164Q04900 197 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 PCOTHQ58A44 107 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 TP53AIP1Q9HCN2 124 aa11.85□□□□□ -0.51
PDLIM3-212ENST00000620787 DNAH7Q8WXX0 4024 aa11.84□□□□□ -0.51
PDLIM3-212ENST00000620787 C8orf17Q9NRJ1 99 aa11.84□□□□□ -0.51
PDLIM3-212ENST00000620787 SEC61GP60059 68 aa11.83□□□□□ -0.52
PDLIM3-212ENST00000620787 DYNC2H1Q8NCM8 4307 aaKnown RBP11.83□□□□□ -0.52
PDLIM3-212ENST00000620787 Q6ZR54 194 aa11.82□□□□□ -0.52
PDLIM3-212ENST00000620787 LOC101927531A0A1B0GV80 90 aa11.81□□□□□ -0.52
PDLIM3-212ENST00000620787 Q75L30 129 aa11.81□□□□□ -0.52
PDLIM3-212ENST00000620787 LINC00483Q53H64 154 aa11.79□□□□□ -0.52
PDLIM3-212ENST00000620787 Q6ZRN7 208 aaPredicted RBP11.77□□□□□ -0.52
PDLIM3-212ENST00000620787 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.77□□□□□ -0.53
PDLIM3-212ENST00000620787 A0A1B0GVX0 72 aa11.76□□□□□ -0.53
PDLIM3-212ENST00000620787 SPACA4Q8TDM5 124 aa11.76□□□□□ -0.53
PDLIM3-212ENST00000620787 IGHV6-1A0A0B4J1U7 121 aa11.76□□□□□ -0.53
PDLIM3-212ENST00000620787 NBDYA0A0U1RRE5 68 aa11.75□□□□□ -0.53
PDLIM3-212ENST00000620787 LCA10Q71F78 164 aa11.75□□□□□ -0.53
PDLIM3-212ENST00000620787 NDUFS5O43920 106 aa11.72□□□□□ -0.53
PDLIM3-212ENST00000620787 WWC2-AS2Q96NR7 200 aa11.72□□□□□ -0.53
PDLIM3-212ENST00000620787 PLECQ15149 4684 aaKnown RBP11.72□□□□□ -0.53
PDLIM3-212ENST00000620787 A6NED7 52 aa11.71□□□□□ -0.54
PDLIM3-212ENST00000620787 PLAC8Q9NZF1 115 aa11.71□□□□□ -0.54
PDLIM3-212ENST00000620787 MRPL34Q9BQ48 92 aaKnown RBP11.7□□□□□ -0.54
PDLIM3-212ENST00000620787 LINC01558Q9Y6Z2 57 aa11.7□□□□□ -0.54
PDLIM3-212ENST00000620787 A0A087X002 238 aa11.69□□□□□ -0.54
PDLIM3-212ENST00000620787 NOTCH2NLQ7Z3S9 236 aa11.69□□□□□ -0.54
PDLIM3-212ENST00000620787 MGAM2Q2M2H8 2515 aa11.68□□□□□ -0.54
PDLIM3-212ENST00000620787 SPAG11AQ6PDA7 123 aa11.68□□□□□ -0.54
PDLIM3-212ENST00000620787 HRES1P13985 223 aa11.68□□□□□ -0.54
PDLIM3-212ENST00000620787 ZNF706Q9Y5V0 76 aaPredicted RBP11.68□□□□□ -0.54
PDLIM3-212ENST00000620787 CDK2AP2O75956 126 aa11.67□□□□□ -0.54
PDLIM3-212ENST00000620787 ATP11AUNQ6ZP68 121 aa11.66□□□□□ -0.54
PDLIM3-212ENST00000620787 SPTSSBQ8NFR3 76 aa11.66□□□□□ -0.54
PDLIM3-212ENST00000620787 ANAPC11Q9NYG5 84 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms