RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 LAMTOR3Q9UHA4 124 aa7.64□□□□□ -1.19
LINC00540-202ENST00000616974 SLC25A20O43772 301 aa7.63□□□□□ -1.19
LINC00540-202ENST00000616974 NAA38Q9BRA0 125 aaKnown RBP7.63□□□□□ -1.19
LINC00540-202ENST00000616974 C4orf48Q5BLP8 95 aa7.62□□□□□ -1.19
LINC00540-202ENST00000616974 SPINK1P00995 79 aa7.6□□□□□ -1.19
LINC00540-202ENST00000616974 SPAG11AQ6PDA7 123 aa7.6□□□□□ -1.19
LINC00540-202ENST00000616974 H3BUT2 72 aa7.59□□□□□ -1.19
LINC00540-202ENST00000616974 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.58□□□□□ -1.2
LINC00540-202ENST00000616974 H0YGX0 51 aa7.57□□□□□ -1.2
LINC00540-202ENST00000616974 PSMB2P49721 201 aa7.57□□□□□ -1.2
LINC00540-202ENST00000616974 IGLV7-46A0A075B6I9 117 aa7.57□□□□□ -1.2
LINC00540-202ENST00000616974 A0A1B0GV72 72 aa7.57□□□□□ -1.2
LINC00540-202ENST00000616974 IGFL1Q6UW32 110 aa7.55□□□□□ -1.2
LINC00540-202ENST00000616974 BATFQ16520 125 aa7.55□□□□□ -1.2
LINC00540-202ENST00000616974 TSTD3H0UI37 97 aa7.54□□□□□ -1.2
LINC00540-202ENST00000616974 OCIAD2Q56VL3 154 aa7.52□□□□□ -1.2
LINC00540-202ENST00000616974 MUC17Q685J3 4493 aa7.52□□□□□ -1.21
LINC00540-202ENST00000616974 SNHG12Q9BXW3 62 aa7.52□□□□□ -1.21
LINC00540-202ENST00000616974 IGLV8-61A0A075B6I0 122 aa7.51□□□□□ -1.21
LINC00540-202ENST00000616974 RPS29P62273 56 aaKnown RBP7.51□□□□□ -1.21
LINC00540-202ENST00000616974 F8WEM9 126 aa7.51□□□□□ -1.21
LINC00540-202ENST00000616974 FABP2P12104 132 aa7.51□□□□□ -1.21
LINC00540-202ENST00000616974 KRTAP13-3Q3SY46 172 aa7.51□□□□□ -1.21
LINC00540-202ENST00000616974 M0R143 59 aa7.5□□□□□ -1.21
LINC00540-202ENST00000616974 NDUFV3P56181 108 aaKnown RBP7.49□□□□□ -1.21
LINC00540-202ENST00000616974 TPRXLQ17RH7 258 aa7.49□□□□□ -1.21
LINC00540-202ENST00000616974 LST1O00453 97 aa7.48□□□□□ -1.21
LINC00540-202ENST00000616974 SCGB1C2P0DMR2 95 aa7.48□□□□□ -1.21
LINC00540-202ENST00000616974 A0A1B0GX51 115 aa7.48□□□□□ -1.21
LINC00540-202ENST00000616974 TCL1BO95988 128 aa7.48□□□□□ -1.21
LINC00540-202ENST00000616974 FAT4Q6V0I7 4981 aa7.47□□□□□ -1.21
LINC00540-202ENST00000616974 CD164Q04900 197 aa7.47□□□□□ -1.21
LINC00540-202ENST00000616974 C1orf195Q5TG92 126 aa7.47□□□□□ -1.21
LINC00540-202ENST00000616974 CDIP1Q9H305 208 aa7.47□□□□□ -1.21
LINC00540-202ENST00000616974 H3BMG7 143 aa7.46□□□□□ -1.21
LINC00540-202ENST00000616974 COX6CP09669 75 aa7.46□□□□□ -1.21
LINC00540-202ENST00000616974 FP248Q71RG6 208 aaPredicted RBP7.46□□□□□ -1.22
LINC00540-202ENST00000616974 PPDPFLQ8WWR9 84 aa7.46□□□□□ -1.22
LINC00540-202ENST00000616974 DNAL4O96015 105 aa7.45□□□□□ -1.22
LINC00540-202ENST00000616974 ORMDL1Q9P0S3 153 aa7.45□□□□□ -1.22
LINC00540-202ENST00000616974 TRBV7-7A0A0K0K1E9 115 aa7.44□□□□□ -1.22
LINC00540-202ENST00000616974 C9orf92A6NGG3 77 aa7.44□□□□□ -1.22
LINC00540-202ENST00000616974 LIMD2Q9BT23 127 aa7.44□□□□□ -1.22
LINC00540-202ENST00000616974 TAX1BP3O14907 124 aa7.43□□□□□ -1.22
LINC00540-202ENST00000616974 Q6JHZ5 121 aa7.43□□□□□ -1.22
LINC00540-202ENST00000616974 A0A1W2PNM2 257 aa7.43□□□□□ -1.22
LINC00540-202ENST00000616974 SNCGO76070 127 aa7.42□□□□□ -1.22
LINC00540-202ENST00000616974 TRACP01848 142 aa7.42□□□□□ -1.22
LINC00540-202ENST00000616974 Q5XG85 94 aa7.42□□□□□ -1.22
LINC00540-202ENST00000616974 MTURNQ8N3F0 131 aa7.4□□□□□ -1.23
LINC00540-202ENST00000616974 XP32Q5T750 250 aa7.39□□□□□ -1.23
LINC00540-202ENST00000616974 A0A087WSZ3 146 aa7.38□□□□□ -1.23
LINC00540-202ENST00000616974 BAALC-AS2P0C853 105 aa7.38□□□□□ -1.23
LINC00540-202ENST00000616974 PCP4L1A6NKN8 68 aa7.37□□□□□ -1.23
LINC00540-202ENST00000616974 TMEM256-PLSCR3K7ERE1 68 aa7.37□□□□□ -1.23
LINC00540-202ENST00000616974 KRTAP4-1Q9BYQ7 146 aa7.37□□□□□ -1.23
LINC00540-202ENST00000616974 C9orf118A6NHY6 69 aa7.36□□□□□ -1.23
LINC00540-202ENST00000616974 TEN1Q86WV5 123 aa7.36□□□□□ -1.23
LINC00540-202ENST00000616974 ANKRD29Q8N6D5 301 aa7.36□□□□□ -1.23
LINC00540-202ENST00000616974 UBE2V1Q13404 147 aa7.35□□□□□ -1.23
LINC00540-202ENST00000616974 ATXN8Q156A1 80 aa7.35□□□□□ -1.23
LINC00540-202ENST00000616974 Q96NJ1 140 aa7.35□□□□□ -1.23
LINC00540-202ENST00000616974 Q6Q795 121 aa7.34□□□□□ -1.23
LINC00540-202ENST00000616974 A0A1W2PPM0 123 aa7.34□□□□□ -1.23
LINC00540-202ENST00000616974 TRBV7-4A0A0J9YYF1 115 aa7.33□□□□□ -1.24
LINC00540-202ENST00000616974 C9JAW5 83 aa7.33□□□□□ -1.24
LINC00540-202ENST00000616974 CCKP06307 115 aa7.33□□□□□ -1.24
LINC00540-202ENST00000616974 DEFB116Q30KQ4 102 aa7.32□□□□□ -1.24
LINC00540-202ENST00000616974 ASB16-AS1Q495Z4 193 aa7.32□□□□□ -1.24
LINC00540-202ENST00000616974 VPS25Q9BRG1 176 aa7.32□□□□□ -1.24
LINC00540-202ENST00000616974 GHRHP01286 108 aa7.3□□□□□ -1.24
LINC00540-202ENST00000616974 RBM3P98179 157 aaKnown RBP7.3□□□□□ -1.24
LINC00540-202ENST00000616974 C14orf132Q9NPU4 83 aa7.27□□□□□ -1.25
LINC00540-202ENST00000616974 OBSCN-AS1Q96MR7 158 aa7.27□□□□□ -1.25
LINC00540-202ENST00000616974 TRBV20-1A0A075B6N2 111 aa7.26□□□□□ -1.25
LINC00540-202ENST00000616974 H3BQ85 93 aa7.26□□□□□ -1.25
LINC00540-202ENST00000616974 PCOTHQ58A44 107 aa7.25□□□□□ -1.25
LINC00540-202ENST00000616974 SMCPP49901 116 aaPredicted RBP7.25□□□□□ -1.25
LINC00540-202ENST00000616974 COL5A1-AS1Q5SY13 56 aa7.25□□□□□ -1.25
LINC00540-202ENST00000616974 DSCR8Q96T75 97 aa7.25□□□□□ -1.25
LINC00540-202ENST00000616974 SPCS1Q9Y6A9 102 aa7.25□□□□□ -1.25
LINC00540-202ENST00000616974 Q6ZQT0 140 aa7.24□□□□□ -1.25
LINC00540-202ENST00000616974 NOTCH2NLQ7Z3S9 236 aa7.24□□□□□ -1.25
LINC00540-202ENST00000616974 SS18L2Q9UHA2 77 aa7.24□□□□□ -1.25
LINC00540-202ENST00000616974 LYRM7Q5U5X0 104 aa7.24□□□□□ -1.25
LINC00540-202ENST00000616974 LINC00472Q9H8W2 130 aa7.23□□□□□ -1.25
LINC00540-202ENST00000616974 SIGMAR1Q99720 223 aa7.21□□□□□ -1.25
LINC00540-202ENST00000616974 DSCR10P59022 87 aa7.21□□□□□ -1.26
LINC00540-202ENST00000616974 IGKV4-1P06312 121 aa7.2□□□□□ -1.26
LINC00540-202ENST00000616974 SEC61BP60468 96 aaKnown RBP7.19□□□□□ -1.26
LINC00540-202ENST00000616974 PRO0461Q9UI25 63 aa7.19□□□□□ -1.26
LINC00540-202ENST00000616974 LOC110117498A0A087WWA1 95 aa7.18□□□□□ -1.26
LINC00540-202ENST00000616974 JMJD7-PLA2G4BH0Y9G9 81 aa7.18□□□□□ -1.26
LINC00540-202ENST00000616974 RPL37P61927 97 aaKnown RBP7.18□□□□□ -1.26
LINC00540-202ENST00000616974 H3BT86 120 aa7.17□□□□□ -1.26
LINC00540-202ENST00000616974 K7EP34 96 aa7.16□□□□□ -1.26
LINC00540-202ENST00000616974 IGHV6-1A0A0B4J1U7 121 aa7.13□□□□□ -1.27
LINC00540-202ENST00000616974 KRTAP16-1A8MUX0 517 aa7.13□□□□□ -1.27
LINC00540-202ENST00000616974 KRTAP19-2Q3LHN2 52 aa7.13□□□□□ -1.27
LINC00540-202ENST00000616974 LCE2AQ5TA79 106 aaPredicted RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms