RNA–Protein interactions for RNA: ENST00000616247.4

LMO3-235, Transcript of LIM domain only 3, humanhuman

TSL 5 BASIC

Gene LMO3, Length 3,227 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-235ENST00000616247 UBE2AP49459 152 aa4.3□□□□□ -1.72
LMO3-235ENST00000616247 TENM1Q9UKZ4 2725 aa4.29□□□□□ -1.72
LMO3-235ENST00000616247 DEFB131BA0A096LNP1 70 aa4.29□□□□□ -1.72
LMO3-235ENST00000616247 NDUFS5O43920 106 aa4.29□□□□□ -1.72
LMO3-235ENST00000616247 COL6A5A8TX70 2615 aa4.29□□□□□ -1.72
LMO3-235ENST00000616247 CASC10Q5T4H9 136 aa4.29□□□□□ -1.72
LMO3-235ENST00000616247 Q5VV11 94 aa4.28□□□□□ -1.72
LMO3-235ENST00000616247 IGFL1Q6UW32 110 aa4.28□□□□□ -1.72
LMO3-235ENST00000616247 ZCCHC13Q8WW36 166 aaKnown RBP4.28□□□□□ -1.72
LMO3-235ENST00000616247 IGLV1-50A0A075B6I6 118 aa4.27□□□□□ -1.73
LMO3-235ENST00000616247 SPAG11AQ6PDA7 123 aa4.27□□□□□ -1.73
LMO3-235ENST00000616247 OTOGQ6ZRI0 2925 aa4.27□□□□□ -1.73
LMO3-235ENST00000616247 NBEAL1Q6ZS30 2694 aa4.27□□□□□ -1.73
LMO3-235ENST00000616247 REG3GQ6UW15 175 aa4.27□□□□□ -1.73
LMO3-235ENST00000616247 ANK3Q12955 4377 aaKnown RBP4.27□□□□□ -1.73
LMO3-235ENST00000616247 KRTAP26-1Q6PEX3 210 aa4.27□□□□□ -1.73
LMO3-235ENST00000616247 CYP4F30PQ9H0H9 118 aa4.27□□□□□ -1.73
LMO3-235ENST00000616247 C16orf90A8MZG2 172 aa4.26□□□□□ -1.73
LMO3-235ENST00000616247 TNP2Q05952 138 aa4.26□□□□□ -1.73
LMO3-235ENST00000616247 LIMD2Q9BT23 127 aa4.26□□□□□ -1.73
LMO3-235ENST00000616247 SPRR4Q96PI1 79 aa4.26□□□□□ -1.73
LMO3-235ENST00000616247 CD164Q04900 197 aa4.25□□□□□ -1.73
LMO3-235ENST00000616247 Q8N9P0 234 aaPredicted RBP4.25□□□□□ -1.73
LMO3-235ENST00000616247 TENM3Q9P273 2699 aa4.25□□□□□ -1.73
LMO3-235ENST00000616247 C11orf45Q8TAV5 145 aa4.25□□□□□ -1.73
LMO3-235ENST00000616247 A0A1B0GW54 56 aa4.25□□□□□ -1.73
LMO3-235ENST00000616247 INAFM1C9JVW0 142 aa4.25□□□□□ -1.73
LMO3-235ENST00000616247 COA5Q86WW8 74 aa4.25□□□□□ -1.73
LMO3-235ENST00000616247 SRRM2Q9UQ35 2752 aaKnown RBP4.25□□□□□ -1.73
LMO3-235ENST00000616247 KRTAP1-1Q07627 177 aa4.24□□□□□ -1.73
LMO3-235ENST00000616247 NSD1Q96L73 2696 aaPredicted RBP4.24□□□□□ -1.73
LMO3-235ENST00000616247 LCE6AA0A183 80 aa4.24□□□□□ -1.73
LMO3-235ENST00000616247 LINC01556Q5JQF7 62 aa4.23□□□□□ -1.73
LMO3-235ENST00000616247 KRTAP4-8Q9BYQ9 185 aa4.23□□□□□ -1.73
LMO3-235ENST00000616247 RBM12B-AS1Q9P1G2 102 aa4.23□□□□□ -1.73
LMO3-235ENST00000616247 STAB1Q9NY15 2570 aa4.23□□□□□ -1.73
LMO3-235ENST00000616247 KTN1-AS1Q86SY8 53 aa4.23□□□□□ -1.73
LMO3-235ENST00000616247 KRTAP4-16G5E9R7 235 aaPredicted RBP4.21□□□□□ -1.73
LMO3-235ENST00000616247 LCA10Q71F78 164 aa4.21□□□□□ -1.73
LMO3-235ENST00000616247 MDFIQ99750 246 aa4.21□□□□□ -1.73
LMO3-235ENST00000616247 LINC00588Q9Y4M8 146 aa4.21□□□□□ -1.73
LMO3-235ENST00000616247 IGLV9-49A0A0B4J1Y8 123 aa4.21□□□□□ -1.74
LMO3-235ENST00000616247 CHTF8P0CG12 524 aa4.2□□□□□ -1.74
LMO3-235ENST00000616247 KRTAP7-1Q8IUC3 87 aa4.2□□□□□ -1.74
LMO3-235ENST00000616247 MGAM2Q2M2H8 2515 aa4.2□□□□□ -1.74
LMO3-235ENST00000616247 SPRR1AP35321 89 aa4.2□□□□□ -1.74
LMO3-235ENST00000616247 CNBPP62633 177 aaKnown RBP4.2□□□□□ -1.74
LMO3-235ENST00000616247 CDK2AP2O75956 126 aa4.19□□□□□ -1.74
LMO3-235ENST00000616247 ATP11AUNQ6ZP68 121 aa4.19□□□□□ -1.74
LMO3-235ENST00000616247 TRRAPQ9Y4A5 3859 aa4.19□□□□□ -1.74
LMO3-235ENST00000616247 IGHV6-1A0A0B4J1U7 121 aa4.19□□□□□ -1.74
LMO3-235ENST00000616247 PHF5AQ7RTV0 110 aaKnown RBP4.19□□□□□ -1.74
LMO3-235ENST00000616247 LOC101927531A0A1B0GV80 90 aa4.19□□□□□ -1.74
LMO3-235ENST00000616247 A8MWP4 228 aa4.19□□□□□ -1.74
LMO3-235ENST00000616247 FBN1P35555 2871 aaKnown RBP4.18□□□□□ -1.74
LMO3-235ENST00000616247 SPANXA2-OT1Q8N9U9 137 aa4.18□□□□□ -1.74
LMO3-235ENST00000616247 H3BNG1 76 aa4.17□□□□□ -1.74
LMO3-235ENST00000616247 TLX1NBP0CAT3 122 aa4.17□□□□□ -1.74
LMO3-235ENST00000616247 KRTAP29-1A8MX34 341 aaPredicted RBP4.17□□□□□ -1.74
LMO3-235ENST00000616247 SPINK6Q6UWN8 80 aa4.17□□□□□ -1.74
LMO3-235ENST00000616247 PLA2G2DQ9UNK4 145 aa4.17□□□□□ -1.74
LMO3-235ENST00000616247 H3BPC8 53 aa4.16□□□□□ -1.74
LMO3-235ENST00000616247 DNAH10OSP0CZ25 163 aa4.16□□□□□ -1.74
LMO3-235ENST00000616247 SPINK7P58062 85 aa4.16□□□□□ -1.74
LMO3-235ENST00000616247 Q75L30 129 aa4.16□□□□□ -1.74
LMO3-235ENST00000616247 UBE2DNLQ8IWF7 75 aa4.16□□□□□ -1.74
LMO3-235ENST00000616247 PRR26Q8N8Z3 221 aa4.16□□□□□ -1.74
LMO3-235ENST00000616247 CDC42SE1Q9NRR8 79 aa4.15□□□□□ -1.74
LMO3-235ENST00000616247 IGLV5-37A0A075B6J1 123 aa4.15□□□□□ -1.75
LMO3-235ENST00000616247 KRTAP10-11P60412 298 aa4.15□□□□□ -1.75
LMO3-235ENST00000616247 PRAC1Q96KF2 57 aa4.15□□□□□ -1.75
LMO3-235ENST00000616247 MOBPQ13875 183 aa4.14□□□□□ -1.75
LMO3-235ENST00000616247 IGLV7-46A0A075B6I9 117 aa4.14□□□□□ -1.75
LMO3-235ENST00000616247 C9orf163Q8N9P6 203 aa4.14□□□□□ -1.75
LMO3-235ENST00000616247 C7orf65Q6ZTY9 151 aa4.14□□□□□ -1.75
LMO3-235ENST00000616247 COL7A1Q02388 2944 aa4.13□□□□□ -1.75
LMO3-235ENST00000616247 MMP24-AS1A0A0U1RRL7 71 aa4.13□□□□□ -1.75
LMO3-235ENST00000616247 RETNLBQ9BQ08 111 aa4.13□□□□□ -1.75
LMO3-235ENST00000616247 LINC00472Q9H8W2 130 aa4.13□□□□□ -1.75
LMO3-235ENST00000616247 A6NN06 94 aa4.12□□□□□ -1.75
LMO3-235ENST00000616247 KRTAP11-1Q8IUC1 163 aa4.12□□□□□ -1.75
LMO3-235ENST00000616247 KRTAP9-2Q9BYQ4 174 aa4.12□□□□□ -1.75
LMO3-235ENST00000616247 HRES1P13985 223 aa4.11□□□□□ -1.75
LMO3-235ENST00000616247 ANAPC11Q9NYG5 84 aa4.11□□□□□ -1.75
LMO3-235ENST00000616247 STAB2Q8WWQ8 2551 aa4.11□□□□□ -1.75
LMO3-235ENST00000616247 C8orf17Q9NRJ1 99 aa4.1□□□□□ -1.75
LMO3-235ENST00000616247 CSMD3Q7Z407 3707 aa4.1□□□□□ -1.75
LMO3-235ENST00000616247 K7EIL1 84 aa4.1□□□□□ -1.75
LMO3-235ENST00000616247 LINC01558Q9Y6Z2 57 aa4.1□□□□□ -1.75
LMO3-235ENST00000616247 TENM2Q9NT68 2774 aa4.09□□□□□ -1.75
LMO3-235ENST00000616247 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.09□□□□□ -1.75
LMO3-235ENST00000616247 H3BS24 57 aa4.09□□□□□ -1.75
LMO3-235ENST00000616247 TP53AIP1Q9HCN2 124 aa4.09□□□□□ -1.75
LMO3-235ENST00000616247 IGLV8-61A0A075B6I0 122 aa4.09□□□□□ -1.76
LMO3-235ENST00000616247 KRTAP9-6A0A140TA67 174 aa4.09□□□□□ -1.76
LMO3-235ENST00000616247 ADM2Q7Z4H4 148 aa4.08□□□□□ -1.76
LMO3-235ENST00000616247 LINC00313P59037 77 aa4.08□□□□□ -1.76
LMO3-235ENST00000616247 MRPL34Q9BQ48 92 aaKnown RBP4.07□□□□□ -1.76
LMO3-235ENST00000616247 A0A087X002 238 aa4.06□□□□□ -1.76
LMO3-235ENST00000616247 NOTCH2NLQ7Z3S9 236 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms