RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 TEP1Q99973 2627 aaKnown RBP8.62□□□□□ -1.03
GGA3-220ENST00000613421 KRTAP26-1Q6PEX3 210 aa8.6□□□□□ -1.03
GGA3-220ENST00000613421 SETXQ7Z333 2677 aaKnown RBP8.59□□□□□ -1.03
GGA3-220ENST00000613421 SMR3BP02814 79 aaPredicted RBP8.59□□□□□ -1.03
GGA3-220ENST00000613421 TNP2Q05952 138 aa8.58□□□□□ -1.04
GGA3-220ENST00000613421 UQCR11O14957 56 aa8.57□□□□□ -1.04
GGA3-220ENST00000613421 C9orf92A6NGG3 77 aa8.56□□□□□ -1.04
GGA3-220ENST00000613421 BOD1L1Q8NFC6 3051 aa8.56□□□□□ -1.04
GGA3-220ENST00000613421 KALRNO60229 2985 aa8.55□□□□□ -1.04
GGA3-220ENST00000613421 NBEAL2Q6ZNJ1 2754 aa8.55□□□□□ -1.04
GGA3-220ENST00000613421 ADGRG4Q8IZF6 3080 aa8.54□□□□□ -1.04
GGA3-220ENST00000613421 ATMQ13315 3056 aa8.54□□□□□ -1.04
GGA3-220ENST00000613421 FRYLO94915 3013 aa8.54□□□□□ -1.04
GGA3-220ENST00000613421 KTN1-AS1Q86SY8 53 aa8.53□□□□□ -1.04
GGA3-220ENST00000613421 FLNCQ14315 2725 aa8.53□□□□□ -1.04
GGA3-220ENST00000613421 COL6A5A8TX70 2615 aa8.53□□□□□ -1.04
GGA3-220ENST00000613421 NOTCH1P46531 2555 aa8.52□□□□□ -1.04
GGA3-220ENST00000613421 SPTBN5Q9NRC6 3674 aaKnown RBP8.52□□□□□ -1.05
GGA3-220ENST00000613421 KRTAP1-5Q9BYS1 174 aa8.52□□□□□ -1.05
GGA3-220ENST00000613421 COL6A3P12111 3177 aa8.5□□□□□ -1.05
GGA3-220ENST00000613421 SPRR1BP22528 89 aa8.5□□□□□ -1.05
GGA3-220ENST00000613421 FP248Q71RG6 208 aaPredicted RBP8.5□□□□□ -1.05
GGA3-220ENST00000613421 OXTP01178 125 aa8.49□□□□□ -1.05
GGA3-220ENST00000613421 MIR22HGQ0VDD5 57 aa8.49□□□□□ -1.05
GGA3-220ENST00000613421 PLAC8Q9NZF1 115 aa8.49□□□□□ -1.05
GGA3-220ENST00000613421 FREM2Q5SZK8 3169 aa8.49□□□□□ -1.05
GGA3-220ENST00000613421 STAB1Q9NY15 2570 aa8.49□□□□□ -1.05
GGA3-220ENST00000613421 MMP24-AS1A0A0U1RRL7 71 aa8.49□□□□□ -1.05
GGA3-220ENST00000613421 LRBAP50851 2863 aa8.48□□□□□ -1.05
GGA3-220ENST00000613421 UBR5O95071 2799 aaPredicted RBP8.48□□□□□ -1.05
GGA3-220ENST00000613421 Q1T7F1 81 aa8.47□□□□□ -1.05
GGA3-220ENST00000613421 IGLV7-46A0A075B6I9 117 aa8.46□□□□□ -1.06
GGA3-220ENST00000613421 DMXL2Q8TDJ6 3036 aa8.46□□□□□ -1.06
GGA3-220ENST00000613421 COL12A1Q99715 3063 aa8.44□□□□□ -1.06
GGA3-220ENST00000613421 LINC00472Q9H8W2 130 aa8.44□□□□□ -1.06
GGA3-220ENST00000613421 FAM229BQ4G0N7 80 aa8.43□□□□□ -1.06
GGA3-220ENST00000613421 ITPR1Q14643 2758 aa8.43□□□□□ -1.06
GGA3-220ENST00000613421 Q8N1X5 172 aa8.43□□□□□ -1.06
GGA3-220ENST00000613421 PRR26Q8N8Z3 221 aa8.42□□□□□ -1.06
GGA3-220ENST00000613421 REV3LO60673 3130 aa8.41□□□□□ -1.06
GGA3-220ENST00000613421 LCA10Q71F78 164 aa8.41□□□□□ -1.06
GGA3-220ENST00000613421 SPEGQ15772 3267 aa8.4□□□□□ -1.06
GGA3-220ENST00000613421 CDC42SE1Q9NRR8 79 aa8.4□□□□□ -1.07
GGA3-220ENST00000613421 TNRC18O15417 2968 aaPredicted RBP8.4□□□□□ -1.07
GGA3-220ENST00000613421 NBEAL1Q6ZS30 2694 aa8.4□□□□□ -1.07
GGA3-220ENST00000613421 KRTAP4-16G5E9R7 235 aaPredicted RBP8.39□□□□□ -1.07
GGA3-220ENST00000613421 HRES1P13985 223 aa8.37□□□□□ -1.07
GGA3-220ENST00000613421 J3QL48 77 aa8.36□□□□□ -1.07
GGA3-220ENST00000613421 BAHCC1Q9P281 2608 aa8.36□□□□□ -1.07
GGA3-220ENST00000613421 TACC2O95359 2948 aa8.35□□□□□ -1.07
GGA3-220ENST00000613421 UTP20O75691 2785 aaKnown RBP8.34□□□□□ -1.07
GGA3-220ENST00000613421 ITPR2Q14571 2701 aa8.34□□□□□ -1.08
GGA3-220ENST00000613421 EYSQ5T1H1 3165 aa8.33□□□□□ -1.08
GGA3-220ENST00000613421 RBM12B-AS1Q9P1G2 102 aa8.33□□□□□ -1.08
GGA3-220ENST00000613421 Q8N9P0 234 aaPredicted RBP8.31□□□□□ -1.08
GGA3-220ENST00000613421 Q75L30 129 aa8.3□□□□□ -1.08
GGA3-220ENST00000613421 LINC01558Q9Y6Z2 57 aa8.28□□□□□ -1.08
GGA3-220ENST00000613421 PANO1I0J062 215 aa8.27□□□□□ -1.09
GGA3-220ENST00000613421 LINC00483Q53H64 154 aa8.27□□□□□ -1.09
GGA3-220ENST00000613421 ZZEF1O43149 2961 aa8.27□□□□□ -1.09
GGA3-220ENST00000613421 Q5W150 140 aa8.26□□□□□ -1.09
GGA3-220ENST00000613421 DMXL1Q9Y485 3027 aa8.26□□□□□ -1.09
GGA3-220ENST00000613421 ZCCHC13Q8WW36 166 aaKnown RBP8.25□□□□□ -1.09
GGA3-220ENST00000613421 USP34Q70CQ2 3546 aa8.25□□□□□ -1.09
GGA3-220ENST00000613421 COX6B2Q6YFQ2 88 aa8.24□□□□□ -1.09
GGA3-220ENST00000613421 NSD1Q96L73 2696 aaPredicted RBP8.24□□□□□ -1.09
GGA3-220ENST00000613421 SPINT4Q6UDR6 99 aa8.23□□□□□ -1.09
GGA3-220ENST00000613421 KRTAP10-2P60368 255 aa8.21□□□□□ -1.09
GGA3-220ENST00000613421 Q5VV11 94 aa8.2□□□□□ -1.1
GGA3-220ENST00000613421 KRTAP10-1P60331 282 aa8.2□□□□□ -1.1
GGA3-220ENST00000613421 HRNRQ86YZ3 2850 aaPredicted RBP8.2□□□□□ -1.1
GGA3-220ENST00000613421 KRTAP29-1A8MX34 341 aaPredicted RBP8.2□□□□□ -1.1
GGA3-220ENST00000613421 CRIPTQ9P021 101 aa8.19□□□□□ -1.1
GGA3-220ENST00000613421 APCP25054 2843 aa8.19□□□□□ -1.1
GGA3-220ENST00000613421 CFAP47Q6ZTR5 3102 aa8.19□□□□□ -1.1
GGA3-220ENST00000613421 LOC400499M0QZD8 3231 aa8.19□□□□□ -1.1
GGA3-220ENST00000613421 A0A0D9SG42 100 aa8.18□□□□□ -1.1
GGA3-220ENST00000613421 Q6ZR54 194 aa8.18□□□□□ -1.1
GGA3-220ENST00000613421 ZANQ9Y493 2812 aa8.18□□□□□ -1.1
GGA3-220ENST00000613421 KRTAP7-1Q8IUC3 87 aa8.17□□□□□ -1.1
GGA3-220ENST00000613421 ASH1LQ9NR48 2969 aaKnown RBP8.16□□□□□ -1.1
GGA3-220ENST00000613421 MYO15AQ9UKN7 3530 aa8.15□□□□□ -1.1
GGA3-220ENST00000613421 A0A1B0GU33 70 aa8.15□□□□□ -1.1
GGA3-220ENST00000613421 KRTAP11-1Q8IUC1 163 aa8.15□□□□□ -1.11
GGA3-220ENST00000613421 KMT2BQ9UMN6 2715 aaPredicted RBP8.15□□□□□ -1.11
GGA3-220ENST00000613421 HIVEP1P15822 2718 aa8.14□□□□□ -1.11
GGA3-220ENST00000613421 STAB2Q8WWQ8 2551 aa8.13□□□□□ -1.11
GGA3-220ENST00000613421 Q6ZSA8 131 aa8.12□□□□□ -1.11
GGA3-220ENST00000613421 Q6ZRN7 208 aaPredicted RBP8.11□□□□□ -1.11
GGA3-220ENST00000613421 NIPBLQ6KC79 2804 aaeCLIP8.1□□□□□ -1.11
GGA3-220ENST00000613421 PRAC1Q96KF2 57 aa8.1□□□□□ -1.11
GGA3-220ENST00000613421 SPINK7P58062 85 aa8.09□□□□□ -1.11
GGA3-220ENST00000613421 LINC01554Q52M75 96 aa8.09□□□□□ -1.11
GGA3-220ENST00000613421 DMAC1Q96GE9 116 aa8.08□□□□□ -1.12
GGA3-220ENST00000613421 H3BS24 57 aa8.07□□□□□ -1.12
GGA3-220ENST00000613421 A0A087X002 238 aa8.06□□□□□ -1.12
GGA3-220ENST00000613421 CELSR2Q9HCU4 2923 aa8.06□□□□□ -1.12
GGA3-220ENST00000613421 LCE6AA0A183 80 aa8.05□□□□□ -1.12
GGA3-220ENST00000613421 NOTCH2NLQ7Z3S9 236 aa8.03□□□□□ -1.12
GGA3-220ENST00000613421 KRTAP13-1Q8IUC0 172 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms