RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 Q8N377 158 aa9.66□□□□□ -0.86
SHKBP1-219ENST00000599575 H3BQ85 93 aa9.65□□□□□ -0.86
SHKBP1-219ENST00000599575 C9orf153Q5TBE3 101 aa9.64□□□□□ -0.87
SHKBP1-219ENST00000599575 SMIM29Q86T20 159 aa9.64□□□□□ -0.87
SHKBP1-219ENST00000599575 FAM218AQ96MZ4 157 aa9.64□□□□□ -0.87
SHKBP1-219ENST00000599575 SPINK1P00995 79 aa9.63□□□□□ -0.87
SHKBP1-219ENST00000599575 SCGB1C2P0DMR2 95 aa9.63□□□□□ -0.87
SHKBP1-219ENST00000599575 F8WEM9 126 aa9.62□□□□□ -0.87
SHKBP1-219ENST00000599575 DNAL4O96015 105 aa9.62□□□□□ -0.87
SHKBP1-219ENST00000599575 RPS29P62273 56 aaKnown RBP9.62□□□□□ -0.87
SHKBP1-219ENST00000599575 TRACP01848 142 aa9.6□□□□□ -0.87
SHKBP1-219ENST00000599575 BATFQ16520 125 aa9.6□□□□□ -0.87
SHKBP1-219ENST00000599575 LYRM7Q5U5X0 104 aa9.6□□□□□ -0.87
SHKBP1-219ENST00000599575 SNHG12Q9BXW3 62 aa9.6□□□□□ -0.87
SHKBP1-219ENST00000599575 CLEC2BQ92478 149 aa9.59□□□□□ -0.87
SHKBP1-219ENST00000599575 LST1O00453 97 aa9.58□□□□□ -0.88
SHKBP1-219ENST00000599575 CD164Q04900 197 aa9.58□□□□□ -0.88
SHKBP1-219ENST00000599575 IGLV8-61A0A075B6I0 122 aa9.57□□□□□ -0.88
SHKBP1-219ENST00000599575 Q6JHZ5 121 aa9.57□□□□□ -0.88
SHKBP1-219ENST00000599575 ORMDL1Q9P0S3 153 aa9.57□□□□□ -0.88
SHKBP1-219ENST00000599575 TMEM256-PLSCR3K7ERE1 68 aa9.55□□□□□ -0.88
SHKBP1-219ENST00000599575 TRBV20-1A0A075B6N2 111 aa9.54□□□□□ -0.88
SHKBP1-219ENST00000599575 ATXN8Q156A1 80 aa9.53□□□□□ -0.88
SHKBP1-219ENST00000599575 HMCN2Q8NDA2 5059 aa9.52□□□□□ -0.88
SHKBP1-219ENST00000599575 C9orf118A6NHY6 69 aa9.52□□□□□ -0.89
SHKBP1-219ENST00000599575 NDUFV3P56181 108 aaKnown RBP9.52□□□□□ -0.89
SHKBP1-219ENST00000599575 FABP2P12104 132 aa9.51□□□□□ -0.89
SHKBP1-219ENST00000599575 LIMD2Q9BT23 127 aa9.51□□□□□ -0.89
SHKBP1-219ENST00000599575 COL5A1-AS1Q5SY13 56 aa9.5□□□□□ -0.89
SHKBP1-219ENST00000599575 H3BUT2 72 aa9.49□□□□□ -0.89
SHKBP1-219ENST00000599575 TAX1BP3O14907 124 aa9.49□□□□□ -0.89
SHKBP1-219ENST00000599575 UBE2V1Q13404 147 aa9.49□□□□□ -0.89
SHKBP1-219ENST00000599575 Q5XG85 94 aa9.48□□□□□ -0.89
SHKBP1-219ENST00000599575 TCL1BO95988 128 aa9.47□□□□□ -0.89
SHKBP1-219ENST00000599575 NAA38Q9BRA0 125 aaKnown RBP9.47□□□□□ -0.89
SHKBP1-219ENST00000599575 A0A1W2PPM0 123 aa9.46□□□□□ -0.9
SHKBP1-219ENST00000599575 H3BMG7 143 aa9.46□□□□□ -0.9
SHKBP1-219ENST00000599575 FP248Q71RG6 208 aaPredicted RBP9.46□□□□□ -0.9
SHKBP1-219ENST00000599575 IGFL1Q6UW32 110 aa9.45□□□□□ -0.9
SHKBP1-219ENST00000599575 PRR4Q16378 134 aa9.44□□□□□ -0.9
SHKBP1-219ENST00000599575 PCP4L1A6NKN8 68 aa9.43□□□□□ -0.9
SHKBP1-219ENST00000599575 BAALC-AS2P0C853 105 aa9.43□□□□□ -0.9
SHKBP1-219ENST00000599575 Q6Q795 121 aa9.43□□□□□ -0.9
SHKBP1-219ENST00000599575 HRCT1Q6UXD1 115 aa9.41□□□□□ -0.9
SHKBP1-219ENST00000599575 ANKRD29Q8N6D5 301 aa9.41□□□□□ -0.9
SHKBP1-219ENST00000599575 TEN1Q86WV5 123 aa9.4□□□□□ -0.9
SHKBP1-219ENST00000599575 TRBV7-7A0A0K0K1E9 115 aa9.38□□□□□ -0.91
SHKBP1-219ENST00000599575 RETNLBQ9BQ08 111 aa9.38□□□□□ -0.91
SHKBP1-219ENST00000599575 A0A0G2JQZ4 141 aa9.37□□□□□ -0.91
SHKBP1-219ENST00000599575 JMJD7-PLA2G4BH0Y9G9 81 aa9.37□□□□□ -0.91
SHKBP1-219ENST00000599575 RBM3P98179 157 aaKnown RBP9.37□□□□□ -0.91
SHKBP1-219ENST00000599575 ASB16-AS1Q495Z4 193 aa9.37□□□□□ -0.91
SHKBP1-219ENST00000599575 IGLV7-46A0A075B6I9 117 aa9.36□□□□□ -0.91
SHKBP1-219ENST00000599575 SS18L2Q9UHA2 77 aa9.36□□□□□ -0.91
SHKBP1-219ENST00000599575 C9JAW5 83 aa9.35□□□□□ -0.91
SHKBP1-219ENST00000599575 TPRXLQ17RH7 258 aa9.35□□□□□ -0.91
SHKBP1-219ENST00000599575 SPCS1Q9Y6A9 102 aa9.35□□□□□ -0.91
SHKBP1-219ENST00000599575 TRBV7-4A0A0J9YYF1 115 aa9.34□□□□□ -0.91
SHKBP1-219ENST00000599575 H3BT86 120 aa9.34□□□□□ -0.91
SHKBP1-219ENST00000599575 DSCR8Q96T75 97 aa9.34□□□□□ -0.91
SHKBP1-219ENST00000599575 C21orf62-AS1Q17RA5 79 aa9.33□□□□□ -0.92
SHKBP1-219ENST00000599575 PDE6GP18545 87 aa9.32□□□□□ -0.92
SHKBP1-219ENST00000599575 A0A1B0GW54 56 aa9.29□□□□□ -0.92
SHKBP1-219ENST00000599575 A0A1W2PNM2 257 aa9.29□□□□□ -0.92
SHKBP1-219ENST00000599575 CCKP06307 115 aa9.29□□□□□ -0.92
SHKBP1-219ENST00000599575 C1orf195Q5TG92 126 aa9.29□□□□□ -0.92
SHKBP1-219ENST00000599575 LRP2P98164 4655 aa9.29□□□□□ -0.92
SHKBP1-219ENST00000599575 LOC110117498A0A087WWA1 95 aa9.27□□□□□ -0.93
SHKBP1-219ENST00000599575 K7EP34 96 aa9.27□□□□□ -0.93
SHKBP1-219ENST00000599575 GTF2H5Q6ZYL4 71 aa9.27□□□□□ -0.93
SHKBP1-219ENST00000599575 OBSCN-AS1Q96MR7 158 aa9.27□□□□□ -0.93
SHKBP1-219ENST00000599575 A0A087WSZ3 146 aa9.26□□□□□ -0.93
SHKBP1-219ENST00000599575 A0A1B0GV72 72 aa9.26□□□□□ -0.93
SHKBP1-219ENST00000599575 KRTAP13-3Q3SY46 172 aa9.24□□□□□ -0.93
SHKBP1-219ENST00000599575 CDIP1Q9H305 208 aa9.23□□□□□ -0.93
SHKBP1-219ENST00000599575 Q6ZQT0 140 aa9.21□□□□□ -0.94
SHKBP1-219ENST00000599575 VPS25Q9BRG1 176 aa9.19□□□□□ -0.94
SHKBP1-219ENST00000599575 UBR4Q5T4S7 5183 aa9.19□□□□□ -0.94
SHKBP1-219ENST00000599575 LPAP08519 4548 aa9.18□□□□□ -0.94
SHKBP1-219ENST00000599575 MTURNQ8N3F0 131 aa9.18□□□□□ -0.94
SHKBP1-219ENST00000599575 C14orf132Q9NPU4 83 aa9.18□□□□□ -0.94
SHKBP1-219ENST00000599575 F8W1H4 67 aa9.17□□□□□ -0.94
SHKBP1-219ENST00000599575 PRO0461Q9UI25 63 aa9.17□□□□□ -0.94
SHKBP1-219ENST00000599575 SMCPP49901 116 aaPredicted RBP9.15□□□□□ -0.94
SHKBP1-219ENST00000599575 Q96NJ1 140 aa9.13□□□□□ -0.95
SHKBP1-219ENST00000599575 LINC00472Q9H8W2 130 aa9.12□□□□□ -0.95
SHKBP1-219ENST00000599575 J3KT08 172 aa9.1□□□□□ -0.95
SHKBP1-219ENST00000599575 XP32Q5T750 250 aa9.1□□□□□ -0.95
SHKBP1-219ENST00000599575 IGKV4-1P06312 121 aa9.07□□□□□ -0.96
SHKBP1-219ENST00000599575 C9orf92A6NGG3 77 aa9.06□□□□□ -0.96
SHKBP1-219ENST00000599575 SIGMAR1Q99720 223 aa9.06□□□□□ -0.96
SHKBP1-219ENST00000599575 SEC61BP60468 96 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-219ENST00000599575 NREPQ16612 68 aa9.04□□□□□ -0.96
SHKBP1-219ENST00000599575 ETDBQ3ZM63 59 aa9□□□□□ -0.97
SHKBP1-219ENST00000599575 NDUFB1O75438 58 aa8.99□□□□□ -0.97
SHKBP1-219ENST00000599575 DEFB116Q30KQ4 102 aa8.99□□□□□ -0.97
SHKBP1-219ENST00000599575 C8orf87E5RJ46 101 aa8.97□□□□□ -0.97
SHKBP1-219ENST00000599575 LINC00313P59037 77 aa8.97□□□□□ -0.97
SHKBP1-219ENST00000599575 A0A1B0GVX0 72 aa8.96□□□□□ -0.98
SHKBP1-219ENST00000599575 RPL37P61927 97 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms