RNA–Protein interactions for RNA: ENST00000592705.5

DNMT1-228, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 5,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-228ENST00000592705 DMBT1Q9UGM3 2413 aaPredicted RBP7.96□□□□□ -1.14
DNMT1-228ENST00000592705 LAMA3Q16787 3333 aa7.96□□□□□ -1.14
DNMT1-228ENST00000592705 CFAP54Q96N23 3096 aa7.95□□□□□ -1.14
DNMT1-228ENST00000592705 DSPP15924 2871 aaKnown RBP7.94□□□□□ -1.14
DNMT1-228ENST00000592705 Q5XG85 94 aa7.94□□□□□ -1.14
DNMT1-228ENST00000592705 KTN1-AS1Q86SY8 53 aa7.94□□□□□ -1.14
DNMT1-228ENST00000592705 CD164Q04900 197 aa7.93□□□□□ -1.14
DNMT1-228ENST00000592705 CDC42SE1Q9NRR8 79 aa7.92□□□□□ -1.14
DNMT1-228ENST00000592705 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.92□□□□□ -1.14
DNMT1-228ENST00000592705 BRCA2P51587 3418 aa7.91□□□□□ -1.14
DNMT1-228ENST00000592705 LAMA2P24043 3122 aaKnown RBP7.9□□□□□ -1.14
DNMT1-228ENST00000592705 UBR5O95071 2799 aaPredicted RBP7.89□□□□□ -1.15
DNMT1-228ENST00000592705 MGAQ8IWI9 3026 aa7.89□□□□□ -1.15
DNMT1-228ENST00000592705 FAM229BQ4G0N7 80 aa7.89□□□□□ -1.15
DNMT1-228ENST00000592705 KRTAP26-1Q6PEX3 210 aa7.87□□□□□ -1.15
DNMT1-228ENST00000592705 PLAC8Q9NZF1 115 aa7.87□□□□□ -1.15
DNMT1-228ENST00000592705 FP248Q71RG6 208 aaPredicted RBP7.86□□□□□ -1.15
DNMT1-228ENST00000592705 SEC61BP60468 96 aaKnown RBP7.86□□□□□ -1.15
DNMT1-228ENST00000592705 MMP24-AS1A0A0U1RRL7 71 aa7.85□□□□□ -1.15
DNMT1-228ENST00000592705 NSD1Q96L73 2696 aaPredicted RBP7.85□□□□□ -1.15
DNMT1-228ENST00000592705 SPRR1BP22528 89 aa7.85□□□□□ -1.15
DNMT1-228ENST00000592705 LCA10Q71F78 164 aa7.84□□□□□ -1.16
DNMT1-228ENST00000592705 MAP1AP78559 2803 aaPredicted RBP7.83□□□□□ -1.16
DNMT1-228ENST00000592705 Q75L30 129 aa7.82□□□□□ -1.16
DNMT1-228ENST00000592705 UNC80Q8N2C7 3258 aa7.81□□□□□ -1.16
DNMT1-228ENST00000592705 LINC00472Q9H8W2 130 aa7.81□□□□□ -1.16
DNMT1-228ENST00000592705 OXTP01178 125 aa7.8□□□□□ -1.16
DNMT1-228ENST00000592705 FLG2Q5D862 2391 aaPredicted RBP7.79□□□□□ -1.16
DNMT1-228ENST00000592705 Q8N9P0 234 aaPredicted RBP7.79□□□□□ -1.16
DNMT1-228ENST00000592705 TENM4Q6N022 2769 aa7.79□□□□□ -1.16
DNMT1-228ENST00000592705 ITPR2Q14571 2701 aa7.79□□□□□ -1.16
DNMT1-228ENST00000592705 KRTAP10-1P60331 282 aa7.78□□□□□ -1.16
DNMT1-228ENST00000592705 LINC01558Q9Y6Z2 57 aa7.77□□□□□ -1.16
DNMT1-228ENST00000592705 HRES1P13985 223 aa7.76□□□□□ -1.17
DNMT1-228ENST00000592705 Q8N1X5 172 aa7.76□□□□□ -1.17
DNMT1-228ENST00000592705 SPINT4Q6UDR6 99 aa7.76□□□□□ -1.17
DNMT1-228ENST00000592705 FLNCQ14315 2725 aa7.75□□□□□ -1.17
DNMT1-228ENST00000592705 TRIOO75962 3097 aa7.75□□□□□ -1.17
DNMT1-228ENST00000592705 KRTAP10-2P60368 255 aa7.75□□□□□ -1.17
DNMT1-228ENST00000592705 WDFY4Q6ZS81 3184 aa7.75□□□□□ -1.17
DNMT1-228ENST00000592705 PRUNE2Q8WUY3 3088 aa7.72□□□□□ -1.17
DNMT1-228ENST00000592705 KRTAP1-5Q9BYS1 174 aa7.72□□□□□ -1.17
DNMT1-228ENST00000592705 KRTAP4-16G5E9R7 235 aaPredicted RBP7.72□□□□□ -1.17
DNMT1-228ENST00000592705 CDH23Q9H251 3354 aa7.71□□□□□ -1.17
DNMT1-228ENST00000592705 REV3LO60673 3130 aa7.71□□□□□ -1.18
DNMT1-228ENST00000592705 Q6ZR54 194 aa7.71□□□□□ -1.18
DNMT1-228ENST00000592705 Q5VV11 94 aa7.7□□□□□ -1.18
DNMT1-228ENST00000592705 LINC01554Q52M75 96 aa7.7□□□□□ -1.18
DNMT1-228ENST00000592705 CRIPTQ9P021 101 aa7.69□□□□□ -1.18
DNMT1-228ENST00000592705 VPS13AQ96RL7 3174 aa7.68□□□□□ -1.18
DNMT1-228ENST00000592705 HIVEP1P15822 2718 aa7.67□□□□□ -1.18
DNMT1-228ENST00000592705 XIRP2A4UGR9 3374 aa7.65□□□□□ -1.19
DNMT1-228ENST00000592705 FRYQ5TBA9 3013 aa7.64□□□□□ -1.19
DNMT1-228ENST00000592705 Q5W150 140 aa7.64□□□□□ -1.19
DNMT1-228ENST00000592705 LINC00483Q53H64 154 aa7.63□□□□□ -1.19
DNMT1-228ENST00000592705 ZCCHC13Q8WW36 166 aaKnown RBP7.62□□□□□ -1.19
DNMT1-228ENST00000592705 KRTAP29-1A8MX34 341 aaPredicted RBP7.61□□□□□ -1.19
DNMT1-228ENST00000592705 ITPR1Q14643 2758 aa7.61□□□□□ -1.19
DNMT1-228ENST00000592705 A0A1B0GU33 70 aa7.6□□□□□ -1.19
DNMT1-228ENST00000592705 A0A0D9SG42 100 aa7.57□□□□□ -1.2
DNMT1-228ENST00000592705 CSAG1Q6PB30 78 aa7.57□□□□□ -1.2
DNMT1-228ENST00000592705 SPINK7P58062 85 aa7.57□□□□□ -1.2
DNMT1-228ENST00000592705 LAMA1P25391 3075 aa7.56□□□□□ -1.2
DNMT1-228ENST00000592705 DNAH14Q0VDD8 3507 aa7.56□□□□□ -1.2
DNMT1-228ENST00000592705 KMT2BQ9UMN6 2715 aaPredicted RBP7.55□□□□□ -1.2
DNMT1-228ENST00000592705 CAMK2N1Q7Z7J9 78 aa7.54□□□□□ -1.2
DNMT1-228ENST00000592705 SZT2Q5T011 3432 aa7.54□□□□□ -1.2
DNMT1-228ENST00000592705 VCANP13611 3396 aa7.52□□□□□ -1.21
DNMT1-228ENST00000592705 DMAC1Q96GE9 116 aa7.52□□□□□ -1.21
DNMT1-228ENST00000592705 CELSR3Q9NYQ7 3312 aa7.51□□□□□ -1.21
DNMT1-228ENST00000592705 PANO1I0J062 215 aa7.5□□□□□ -1.21
DNMT1-228ENST00000592705 NBEAL2Q6ZNJ1 2754 aa7.49□□□□□ -1.21
DNMT1-228ENST00000592705 NBEAQ8NFP9 2946 aa7.49□□□□□ -1.21
DNMT1-228ENST00000592705 UTP20O75691 2785 aaKnown RBP7.48□□□□□ -1.21
DNMT1-228ENST00000592705 PRAC1Q96KF2 57 aa7.47□□□□□ -1.21
DNMT1-228ENST00000592705 KRTAP7-1Q8IUC3 87 aa7.46□□□□□ -1.21
DNMT1-228ENST00000592705 TACC2O95359 2948 aa7.46□□□□□ -1.22
DNMT1-228ENST00000592705 KALRNO60229 2985 aa7.45□□□□□ -1.22
DNMT1-228ENST00000592705 S4R3F8 94 aa7.42□□□□□ -1.22
DNMT1-228ENST00000592705 KRTAP11-1Q8IUC1 163 aa7.42□□□□□ -1.22
DNMT1-228ENST00000592705 ASB16-AS1Q495Z4 193 aa7.38□□□□□ -1.23
DNMT1-228ENST00000592705 ADGRG4Q8IZF6 3080 aa7.37□□□□□ -1.23
DNMT1-228ENST00000592705 A0A087X002 238 aa7.37□□□□□ -1.23
DNMT1-228ENST00000592705 Q6ZRN7 208 aaPredicted RBP7.37□□□□□ -1.23
DNMT1-228ENST00000592705 NOTCH2NLQ7Z3S9 236 aa7.37□□□□□ -1.23
DNMT1-228ENST00000592705 LRBAP50851 2863 aa7.36□□□□□ -1.23
DNMT1-228ENST00000592705 R4GN34 69 aa7.35□□□□□ -1.23
DNMT1-228ENST00000592705 ATMQ13315 3056 aa7.35□□□□□ -1.23
DNMT1-228ENST00000592705 COL12A1Q99715 3063 aa7.35□□□□□ -1.23
DNMT1-228ENST00000592705 KRTAP13-1Q8IUC0 172 aa7.34□□□□□ -1.23
DNMT1-228ENST00000592705 FRYLO94915 3013 aa7.34□□□□□ -1.23
DNMT1-228ENST00000592705 CRYBG3Q68DQ2 2970 aa7.34□□□□□ -1.23
DNMT1-228ENST00000592705 BOD1L1Q8NFC6 3051 aa7.32□□□□□ -1.24
DNMT1-228ENST00000592705 FREM2Q5SZK8 3169 aa7.32□□□□□ -1.24
DNMT1-228ENST00000592705 COL6A3P12111 3177 aa7.32□□□□□ -1.24
DNMT1-228ENST00000592705 H3BS24 57 aa7.31□□□□□ -1.24
DNMT1-228ENST00000592705 APCP25054 2843 aa7.31□□□□□ -1.24
DNMT1-228ENST00000592705 SPTBN5Q9NRC6 3674 aaKnown RBP7.31□□□□□ -1.24
DNMT1-228ENST00000592705 H1FX-AS1Q4G0G2 97 aa7.31□□□□□ -1.24
DNMT1-228ENST00000592705 NIPBLQ6KC79 2804 aaeCLIP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms