RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 MRPL35Q9NZE8 188 aaKnown RBP4.36□□□□□ -1.71
VPS53-217ENST00000575100 DNAH2Q9P225 4427 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.35□□□□□ -1.71
VPS53-217ENST00000575100 MYMXA0A1B0GTQ4 84 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 NDUFC1O43677 76 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 IGHV3-30P01768 117 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 IGHV3-33P01772 117 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 IGHV3-30-5P0DP03 117 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 HIGD2BQ4VC39 106 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 SPANXA2-OT1Q8N9U9 137 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 TMEM141Q96I45 108 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 AMELXQ99217 191 aa4.35□□□□□ -1.71
VPS53-217ENST00000575100 IGLV4-69A0A075B6H9 119 aa4.34□□□□□ -1.71
VPS53-217ENST00000575100 XCL1P47992 114 aa4.34□□□□□ -1.71
VPS53-217ENST00000575100 TIMM21Q9BVV7 248 aa4.34□□□□□ -1.71
VPS53-217ENST00000575100 IGKV3OR2-268A0A0C4DH90 116 aa4.34□□□□□ -1.71
VPS53-217ENST00000575100 LINC00269Q8N2A0 174 aa4.34□□□□□ -1.71
VPS53-217ENST00000575100 Q8NDZ9 215 aa4.34□□□□□ -1.71
VPS53-217ENST00000575100 KRTAP1-5Q9BYS1 174 aa4.34□□□□□ -1.71
VPS53-217ENST00000575100 ABCA13Q86UQ4 5058 aa4.34□□□□□ -1.72
VPS53-217ENST00000575100 TRAV13-2A0A0B4J235 113 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 TRAV12-1A0A0B4J245 112 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 RTL8CO15255 209 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 CCL18P55774 89 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 COX6A2Q02221 97 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 KLK12Q9UKR0 248 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 PKHD1P08F94 4074 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 PKD1P98161 4303 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 LINC01549A6NIU2 74 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 C11orf86A6NJI1 115 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 ANGP03950 147 aaKnown RBP4.33□□□□□ -1.72
VPS53-217ENST00000575100 UBE2D1P51668 147 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 ENHOQ6UWT2 76 aa4.33□□□□□ -1.72
VPS53-217ENST00000575100 IGLV10-54A0A075B6I4 117 aa4.32□□□□□ -1.72
VPS53-217ENST00000575100 F8VRH5 84 aa4.32□□□□□ -1.72
VPS53-217ENST00000575100 DNAH10OSP0CZ25 163 aa4.32□□□□□ -1.72
VPS53-217ENST00000575100 KRTAP10-2P60368 255 aa4.32□□□□□ -1.72
VPS53-217ENST00000575100 KLKP1Q107X0 134 aa4.32□□□□□ -1.72
VPS53-217ENST00000575100 FAM229BQ4G0N7 80 aa4.32□□□□□ -1.72
VPS53-217ENST00000575100 LINC01556Q5JQF7 62 aa4.32□□□□□ -1.72
VPS53-217ENST00000575100 PRR34Q9NV39 138 aa4.32□□□□□ -1.72
VPS53-217ENST00000575100 A0A0B4J2C4 111 aa4.31□□□□□ -1.72
VPS53-217ENST00000575100 LINC00959A0A1B0GUT2 108 aa4.31□□□□□ -1.72
VPS53-217ENST00000575100 BCE1O60756 84 aa4.31□□□□□ -1.72
VPS53-217ENST00000575100 RPL28P46779 137 aaKnown RBP4.31□□□□□ -1.72
VPS53-217ENST00000575100 C1orf64Q8NEQ6 169 aa4.31□□□□□ -1.72
VPS53-217ENST00000575100 CDKN2A-AS1Q9UH64 79 aa4.31□□□□□ -1.72
VPS53-217ENST00000575100 KRTAP9-7A8MTY7 169 aa4.3□□□□□ -1.72
VPS53-217ENST00000575100 ZNF22P17026 224 aaPredicted RBP4.3□□□□□ -1.72
VPS53-217ENST00000575100 Q5W150 140 aa4.3□□□□□ -1.72
VPS53-217ENST00000575100 Q6ZR54 194 aa4.3□□□□□ -1.72
VPS53-217ENST00000575100 UBE2DNLQ8IWF7 75 aa4.3□□□□□ -1.72
VPS53-217ENST00000575100 IGHV3-64A0A075B6Q5 118 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 IGKV2D-26A0A0A0MRZ7 120 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 KRTAP26-1Q6PEX3 210 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 HSPG2P98160 4391 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 LOC107984156A0A0G2JMH3 177 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 TEX49A0A1B0GTD5 131 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 PLNP26678 52 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 ARL17AQ8IVW1 177 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 NDUFA12Q9UI09 145 aa4.29□□□□□ -1.72
VPS53-217ENST00000575100 TRBV10-2A0A0K0K1G8 114 aa4.27□□□□□ -1.73
VPS53-217ENST00000575100 C16orf90A8MZG2 172 aa4.27□□□□□ -1.73
VPS53-217ENST00000575100 M0R2N4 97 aa4.27□□□□□ -1.73
VPS53-217ENST00000575100 CRPP02741 224 aa4.27□□□□□ -1.73
VPS53-217ENST00000575100 C20orf197Q8N268 126 aa4.27□□□□□ -1.73
VPS53-217ENST00000575100 NBDYA0A0U1RRE5 68 aa4.27□□□□□ -1.73
VPS53-217ENST00000575100 H3BQ85 93 aa4.27□□□□□ -1.73
VPS53-217ENST00000575100 ASB16-AS1Q495Z4 193 aa4.27□□□□□ -1.73
VPS53-217ENST00000575100 IGKV2D-24A0A075B6R9 120 aa4.26□□□□□ -1.73
VPS53-217ENST00000575100 SLPIP03973 132 aa4.25□□□□□ -1.73
VPS53-217ENST00000575100 DEFB116Q30KQ4 102 aa4.25□□□□□ -1.73
VPS53-217ENST00000575100 PANO1I0J062 215 aa4.25□□□□□ -1.73
VPS53-217ENST00000575100 C1orf134Q5TEV5 83 aa4.25□□□□□ -1.73
VPS53-217ENST00000575100 RETNLBQ9BQ08 111 aa4.25□□□□□ -1.73
VPS53-217ENST00000575100 LRP1BQ9NZR2 4599 aa4.24□□□□□ -1.73
VPS53-217ENST00000575100 SFTA2Q6UW10 78 aa4.24□□□□□ -1.73
VPS53-217ENST00000575100 Q6ZRN7 208 aaPredicted RBP4.24□□□□□ -1.73
VPS53-217ENST00000575100 SPTSSBQ8NFR3 76 aa4.24□□□□□ -1.73
VPS53-217ENST00000575100 APOBP04114 4563 aaKnown RBP4.24□□□□□ -1.73
VPS53-217ENST00000575100 F8WEM9 126 aa4.23□□□□□ -1.73
VPS53-217ENST00000575100 ATXN8Q156A1 80 aa4.23□□□□□ -1.73
VPS53-217ENST00000575100 H3BPC8 53 aa4.23□□□□□ -1.73
VPS53-217ENST00000575100 C2orf82Q6UX34 121 aa4.23□□□□□ -1.73
VPS53-217ENST00000575100 TOMM7Q9P0U1 55 aa4.23□□□□□ -1.73
VPS53-217ENST00000575100 TRAV7A0A075B6U4 112 aa4.22□□□□□ -1.73
VPS53-217ENST00000575100 HCG22E2RYF7 251 aa4.22□□□□□ -1.73
VPS53-217ENST00000575100 Q6JHZ5 121 aa4.22□□□□□ -1.73
VPS53-217ENST00000575100 IGKV2D-30A0A075B6S6 120 aa4.22□□□□□ -1.73
VPS53-217ENST00000575100 COX7B2Q8TF08 81 aa4.22□□□□□ -1.73
VPS53-217ENST00000575100 ZNF625Q96I27 306 aaPredicted RBP4.22□□□□□ -1.73
VPS53-217ENST00000575100 ZNF815PA8K554 130 aa4.21□□□□□ -1.74
VPS53-217ENST00000575100 ZNF861PO60384 105 aa4.21□□□□□ -1.74
VPS53-217ENST00000575100 PRO1854Q9UHT4 67 aa4.21□□□□□ -1.74
VPS53-217ENST00000575100 TRAV22A0A0B4J277 110 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 LRCOL1A6NCL2 159 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 SPAG11BQ08648 103 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 Q8IZM0 81 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 CYP4F30PQ9H0H9 118 aa4.2□□□□□ -1.74
VPS53-217ENST00000575100 DNAH5Q8TE73 4624 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms