RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 A0A0B4J2C4 111 aa11.17□□□□□ -0.62
NUP88-204ENST00000572290 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.16□□□□□ -0.62
NUP88-204ENST00000572290 PYY3Q5JQD4 70 aa11.15□□□□□ -0.62
NUP88-204ENST00000572290 Q5XG85 94 aa11.15□□□□□ -0.62
NUP88-204ENST00000572290 CEND1Q8N111 149 aa11.15□□□□□ -0.62
NUP88-204ENST00000572290 ASB16-AS1Q495Z4 193 aa11.14□□□□□ -0.63
NUP88-204ENST00000572290 TMA7Q9Y2S6 64 aaKnown RBP11.12□□□□□ -0.63
NUP88-204ENST00000572290 FAT4Q6V0I7 4981 aa11.11□□□□□ -0.63
NUP88-204ENST00000572290 TMEM238LA0A1B0GVL6 79 aa11.11□□□□□ -0.63
NUP88-204ENST00000572290 A6NJY4 79 aa11.11□□□□□ -0.63
NUP88-204ENST00000572290 SEC61BP60468 96 aaKnown RBP11.11□□□□□ -0.63
NUP88-204ENST00000572290 PPDPFLQ8WWR9 84 aa11.11□□□□□ -0.63
NUP88-204ENST00000572290 H0YGX0 51 aa11.1□□□□□ -0.63
NUP88-204ENST00000572290 XP32Q5T750 250 aa11.1□□□□□ -0.63
NUP88-204ENST00000572290 IGLV8-61A0A075B6I0 122 aa11.09□□□□□ -0.63
NUP88-204ENST00000572290 Q6JHZ5 121 aa11.09□□□□□ -0.63
NUP88-204ENST00000572290 SNCGO76070 127 aa11.08□□□□□ -0.64
NUP88-204ENST00000572290 FXYD2P54710 66 aa11.08□□□□□ -0.64
NUP88-204ENST00000572290 OCIAD2Q56VL3 154 aa11.08□□□□□ -0.64
NUP88-204ENST00000572290 C1orf195Q5TG92 126 aa11.08□□□□□ -0.64
NUP88-204ENST00000572290 SNHG12Q9BXW3 62 aa11.07□□□□□ -0.64
NUP88-204ENST00000572290 PRO1854Q9UHT4 67 aa11.07□□□□□ -0.64
NUP88-204ENST00000572290 TCL1BO95988 128 aa11.06□□□□□ -0.64
NUP88-204ENST00000572290 CLEC2BQ92478 149 aa11.06□□□□□ -0.64
NUP88-204ENST00000572290 IGFL1Q6UW32 110 aa11.05□□□□□ -0.64
NUP88-204ENST00000572290 C9orf92A6NGG3 77 aa11.04□□□□□ -0.64
NUP88-204ENST00000572290 FAM218AQ96MZ4 157 aa11.04□□□□□ -0.64
NUP88-204ENST00000572290 HSD52Q0P140 79 aa11.03□□□□□ -0.64
NUP88-204ENST00000572290 TRBV7-7A0A0K0K1E9 115 aa11□□□□□ -0.65
NUP88-204ENST00000572290 A0A1B0GX51 115 aa11□□□□□ -0.65
NUP88-204ENST00000572290 H3BUT2 72 aa10.99□□□□□ -0.65
NUP88-204ENST00000572290 KRTAP4-1Q9BYQ7 146 aa10.98□□□□□ -0.65
NUP88-204ENST00000572290 UQCR10Q9UDW1 63 aa10.98□□□□□ -0.65
NUP88-204ENST00000572290 TRIAP1O43715 76 aa10.97□□□□□ -0.65
NUP88-204ENST00000572290 GHRHP01286 108 aa10.96□□□□□ -0.65
NUP88-204ENST00000572290 NDUFV3P56181 108 aaKnown RBP10.95□□□□□ -0.66
NUP88-204ENST00000572290 K7ERJ3 54 aa10.94□□□□□ -0.66
NUP88-204ENST00000572290 LCE2AQ5TA79 106 aaPredicted RBP10.93□□□□□ -0.66
NUP88-204ENST00000572290 PSMB2P49721 201 aa10.92□□□□□ -0.66
NUP88-204ENST00000572290 FABP2P12104 132 aa10.91□□□□□ -0.66
NUP88-204ENST00000572290 KRTAP9-2Q9BYQ4 174 aa10.91□□□□□ -0.66
NUP88-204ENST00000572290 PCOTHQ58A44 107 aa10.9□□□□□ -0.66
NUP88-204ENST00000572290 H3BMG7 143 aa10.88□□□□□ -0.67
NUP88-204ENST00000572290 COX6CP09669 75 aa10.88□□□□□ -0.67
NUP88-204ENST00000572290 Q6Q795 121 aa10.88□□□□□ -0.67
NUP88-204ENST00000572290 DNAL4O96015 105 aa10.87□□□□□ -0.67
NUP88-204ENST00000572290 LST1O00453 97 aa10.86□□□□□ -0.67
NUP88-204ENST00000572290 TEN1Q86WV5 123 aa10.86□□□□□ -0.67
NUP88-204ENST00000572290 SS18L2Q9UHA2 77 aa10.85□□□□□ -0.67
NUP88-204ENST00000572290 ORMDL1Q9P0S3 153 aa10.84□□□□□ -0.67
NUP88-204ENST00000572290 H3BQ85 93 aa10.83□□□□□ -0.68
NUP88-204ENST00000572290 RPL37P61927 97 aaKnown RBP10.83□□□□□ -0.68
NUP88-204ENST00000572290 A0A087WSZ3 146 aa10.8□□□□□ -0.68
NUP88-204ENST00000572290 TMEM256-PLSCR3K7ERE1 68 aa10.78□□□□□ -0.68
NUP88-204ENST00000572290 SCGB1C2P0DMR2 95 aa10.77□□□□□ -0.69
NUP88-204ENST00000572290 A0A1W2PNM2 257 aa10.76□□□□□ -0.69
NUP88-204ENST00000572290 ANKRD29Q8N6D5 301 aa10.76□□□□□ -0.69
NUP88-204ENST00000572290 A0A1B0GV72 72 aa10.75□□□□□ -0.69
NUP88-204ENST00000572290 TRACP01848 142 aa10.75□□□□□ -0.69
NUP88-204ENST00000572290 OBSCN-AS1Q96MR7 158 aa10.75□□□□□ -0.69
NUP88-204ENST00000572290 UBE2V1Q13404 147 aa10.72□□□□□ -0.69
NUP88-204ENST00000572290 KRTAP9-6A0A140TA67 174 aa10.71□□□□□ -0.69
NUP88-204ENST00000572290 M0R143 59 aa10.71□□□□□ -0.69
NUP88-204ENST00000572290 SMIM6P0DI80 62 aa10.71□□□□□ -0.69
NUP88-204ENST00000572290 TRBV7-4A0A0J9YYF1 115 aa10.7□□□□□ -0.7
NUP88-204ENST00000572290 Q96NJ1 140 aa10.7□□□□□ -0.7
NUP88-204ENST00000572290 Q75L30 129 aa10.68□□□□□ -0.7
NUP88-204ENST00000572290 KRTAP19-2Q3LHN2 52 aa10.67□□□□□ -0.7
NUP88-204ENST00000572290 LCE2CQ5TA81 110 aa10.67□□□□□ -0.7
NUP88-204ENST00000572290 CCKP06307 115 aa10.65□□□□□ -0.7
NUP88-204ENST00000572290 ATP11AUNQ6ZP68 121 aa10.64□□□□□ -0.71
NUP88-204ENST00000572290 SIGMAR1Q99720 223 aa10.63□□□□□ -0.71
NUP88-204ENST00000572290 RBM3P98179 157 aaKnown RBP10.62□□□□□ -0.71
NUP88-204ENST00000572290 BAALC-AS2P0C853 105 aa10.61□□□□□ -0.71
NUP88-204ENST00000572290 NAA38Q9BRA0 125 aaKnown RBP10.6□□□□□ -0.71
NUP88-204ENST00000572290 IGKV4-1P06312 121 aa10.59□□□□□ -0.71
NUP88-204ENST00000572290 ATXN8Q156A1 80 aa10.59□□□□□ -0.71
NUP88-204ENST00000572290 C20orf166-AS1Q96NR2 134 aa10.59□□□□□ -0.71
NUP88-204ENST00000572290 DSCR8Q96T75 97 aa10.59□□□□□ -0.71
NUP88-204ENST00000572290 TSTD3H0UI37 97 aa10.58□□□□□ -0.72
NUP88-204ENST00000572290 DSCR10P59022 87 aa10.58□□□□□ -0.72
NUP88-204ENST00000572290 VPS25Q9BRG1 176 aa10.58□□□□□ -0.72
NUP88-204ENST00000572290 A8MUU9 505 aa10.56□□□□□ -0.72
NUP88-204ENST00000572290 LINC00472Q9H8W2 130 aa10.56□□□□□ -0.72
NUP88-204ENST00000572290 MT1HP80294 61 aa10.55□□□□□ -0.72
NUP88-204ENST00000572290 DEFB116Q30KQ4 102 aa10.54□□□□□ -0.72
NUP88-204ENST00000572290 C9JAW5 83 aa10.53□□□□□ -0.72
NUP88-204ENST00000572290 LINC00313P59037 77 aa10.53□□□□□ -0.72
NUP88-204ENST00000572290 LOC105371267A0A1B0GV96 52 aa10.51□□□□□ -0.73
NUP88-204ENST00000572290 BATFQ16520 125 aa10.51□□□□□ -0.73
NUP88-204ENST00000572290 COX6B2Q6YFQ2 88 aa10.51□□□□□ -0.73
NUP88-204ENST00000572290 LYRM7Q5U5X0 104 aa10.5□□□□□ -0.73
NUP88-204ENST00000572290 C21orf62-AS1Q17RA5 79 aa10.49□□□□□ -0.73
NUP88-204ENST00000572290 JMJD7-PLA2G4BH0Y9G9 81 aa10.48□□□□□ -0.73
NUP88-204ENST00000572290 IGHV6-1A0A0B4J1U7 121 aa10.46□□□□□ -0.73
NUP88-204ENST00000572290 KRTAP16-1A8MUX0 517 aa10.46□□□□□ -0.73
NUP88-204ENST00000572290 TRBV20-1A0A075B6N2 111 aa10.45□□□□□ -0.74
NUP88-204ENST00000572290 NOTCH2NLQ7Z3S9 236 aa10.45□□□□□ -0.74
NUP88-204ENST00000572290 Q6ZQT0 140 aa10.44□□□□□ -0.74
NUP88-204ENST00000572290 LOC110117498A0A087WWA1 95 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms