RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 OXTP01178 125 aa9.43□□□□□ -0.9
CIITA-204ENST00000570546 Q75L30 129 aa9.42□□□□□ -0.9
CIITA-204ENST00000570546 LCA10Q71F78 164 aa9.42□□□□□ -0.9
CIITA-204ENST00000570546 USP24Q9UPU5 2620 aa9.41□□□□□ -0.9
CIITA-204ENST00000570546 PLAC8Q9NZF1 115 aa9.41□□□□□ -0.9
CIITA-204ENST00000570546 LAMA1P25391 3075 aa9.41□□□□□ -0.9
CIITA-204ENST00000570546 CENPEQ02224 2701 aa9.41□□□□□ -0.9
CIITA-204ENST00000570546 HRES1P13985 223 aa9.41□□□□□ -0.9
CIITA-204ENST00000570546 KRTAP1-5Q9BYS1 174 aa9.41□□□□□ -0.9
CIITA-204ENST00000570546 J3QL48 77 aa9.4□□□□□ -0.9
CIITA-204ENST00000570546 Q8N9P0 234 aaPredicted RBP9.4□□□□□ -0.9
CIITA-204ENST00000570546 CELSR3Q9NYQ7 3312 aa9.39□□□□□ -0.91
CIITA-204ENST00000570546 FRYQ5TBA9 3013 aa9.38□□□□□ -0.91
CIITA-204ENST00000570546 VCANP13611 3396 aa9.38□□□□□ -0.91
CIITA-204ENST00000570546 CFAP46Q8IYW2 2715 aa9.38□□□□□ -0.91
CIITA-204ENST00000570546 MGAM2Q2M2H8 2515 aa9.36□□□□□ -0.91
CIITA-204ENST00000570546 LINC01558Q9Y6Z2 57 aa9.36□□□□□ -0.91
CIITA-204ENST00000570546 DSPP15924 2871 aaKnown RBP9.34□□□□□ -0.91
CIITA-204ENST00000570546 KRTAP4-16G5E9R7 235 aaPredicted RBP9.34□□□□□ -0.91
CIITA-204ENST00000570546 HELZ2Q9BYK8 2649 aaKnown RBP9.34□□□□□ -0.92
CIITA-204ENST00000570546 Q5VV11 94 aa9.31□□□□□ -0.92
CIITA-204ENST00000570546 CRIPTQ9P021 101 aa9.27□□□□□ -0.92
CIITA-204ENST00000570546 CHD6Q8TD26 2715 aa9.26□□□□□ -0.93
CIITA-204ENST00000570546 Q5W150 140 aa9.26□□□□□ -0.93
CIITA-204ENST00000570546 MAST4O15021 2626 aa9.25□□□□□ -0.93
CIITA-204ENST00000570546 A0A0D9SG42 100 aa9.24□□□□□ -0.93
CIITA-204ENST00000570546 GCN1Q92616 2671 aaKnown RBP9.23□□□□□ -0.93
CIITA-204ENST00000570546 COX6B2Q6YFQ2 88 aa9.23□□□□□ -0.93
CIITA-204ENST00000570546 ZCCHC13Q8WW36 166 aaKnown RBP9.22□□□□□ -0.93
CIITA-204ENST00000570546 LINC00483Q53H64 154 aa9.22□□□□□ -0.93
CIITA-204ENST00000570546 KRTAP29-1A8MX34 341 aaPredicted RBP9.19□□□□□ -0.94
CIITA-204ENST00000570546 NBEAQ8NFP9 2946 aa9.19□□□□□ -0.94
CIITA-204ENST00000570546 RBM12B-AS1Q9P1G2 102 aa9.19□□□□□ -0.94
CIITA-204ENST00000570546 A0A1B0GU33 70 aa9.18□□□□□ -0.94
CIITA-204ENST00000570546 SPINK7P58062 85 aa9.18□□□□□ -0.94
CIITA-204ENST00000570546 PANO1I0J062 215 aa9.17□□□□□ -0.94
CIITA-204ENST00000570546 COL6A3P12111 3177 aa9.16□□□□□ -0.94
CIITA-204ENST00000570546 IGSF10Q6WRI0 2623 aa9.15□□□□□ -0.94
CIITA-204ENST00000570546 SPTBN5Q9NRC6 3674 aaKnown RBP9.15□□□□□ -0.94
CIITA-204ENST00000570546 KALRNO60229 2985 aa9.15□□□□□ -0.94
CIITA-204ENST00000570546 Q6ZR54 194 aa9.13□□□□□ -0.95
CIITA-204ENST00000570546 TEX15Q9BXT5 2789 aa9.13□□□□□ -0.95
CIITA-204ENST00000570546 MAP1AP78559 2803 aaPredicted RBP9.13□□□□□ -0.95
CIITA-204ENST00000570546 FRYLO94915 3013 aa9.11□□□□□ -0.95
CIITA-204ENST00000570546 NBEAL2Q6ZNJ1 2754 aa9.1□□□□□ -0.95
CIITA-204ENST00000570546 KRTAP7-1Q8IUC3 87 aa9.09□□□□□ -0.95
CIITA-204ENST00000570546 LRBAP50851 2863 aa9.09□□□□□ -0.96
CIITA-204ENST00000570546 UNC79Q9P2D8 2635 aa9.08□□□□□ -0.96
CIITA-204ENST00000570546 LINC01554Q52M75 96 aa9.08□□□□□ -0.96
CIITA-204ENST00000570546 PRAC1Q96KF2 57 aa9.08□□□□□ -0.96
CIITA-204ENST00000570546 FREM2Q5SZK8 3169 aa9.07□□□□□ -0.96
CIITA-204ENST00000570546 BOD1L1Q8NFC6 3051 aa9.07□□□□□ -0.96
CIITA-204ENST00000570546 DMAC1Q96GE9 116 aa9.07□□□□□ -0.96
CIITA-204ENST00000570546 KRTAP11-1Q8IUC1 163 aa9.07□□□□□ -0.96
CIITA-204ENST00000570546 KRTAP10-2P60368 255 aa9.07□□□□□ -0.96
CIITA-204ENST00000570546 ADGRG4Q8IZF6 3080 aa9.06□□□□□ -0.96
CIITA-204ENST00000570546 SETXQ7Z333 2677 aaKnown RBP9.06□□□□□ -0.96
CIITA-204ENST00000570546 KRTAP10-1P60331 282 aa9.06□□□□□ -0.96
CIITA-204ENST00000570546 H3BS24 57 aa9.05□□□□□ -0.96
CIITA-204ENST00000570546 ATMQ13315 3056 aa9.03□□□□□ -0.96
CIITA-204ENST00000570546 Q6ZSA8 131 aa9.02□□□□□ -0.97
CIITA-204ENST00000570546 LCE6AA0A183 80 aa9.02□□□□□ -0.97
CIITA-204ENST00000570546 SPEGQ15772 3267 aa8.99□□□□□ -0.97
CIITA-204ENST00000570546 A0A087X002 238 aa8.99□□□□□ -0.97
CIITA-204ENST00000570546 NOTCH2NLQ7Z3S9 236 aa8.99□□□□□ -0.97
CIITA-204ENST00000570546 REV3LO60673 3130 aa8.98□□□□□ -0.97
CIITA-204ENST00000570546 TEP1Q99973 2627 aaKnown RBP8.97□□□□□ -0.97
CIITA-204ENST00000570546 S4R3F8 94 aa8.97□□□□□ -0.97
CIITA-204ENST00000570546 Q6ZRN7 208 aaPredicted RBP8.94□□□□□ -0.98
CIITA-204ENST00000570546 CSAG1Q6PB30 78 aa8.94□□□□□ -0.98
CIITA-204ENST00000570546 USP34Q70CQ2 3546 aa8.94□□□□□ -0.98
CIITA-204ENST00000570546 DMXL2Q8TDJ6 3036 aa8.91□□□□□ -0.98
CIITA-204ENST00000570546 ITPR1Q14643 2758 aa8.91□□□□□ -0.98
CIITA-204ENST00000570546 STAB1Q9NY15 2570 aa8.89□□□□□ -0.99
CIITA-204ENST00000570546 KRTAP13-1Q8IUC0 172 aa8.89□□□□□ -0.99
CIITA-204ENST00000570546 COL12A1Q99715 3063 aa8.87□□□□□ -0.99
CIITA-204ENST00000570546 NOTCH1P46531 2555 aa8.87□□□□□ -0.99
CIITA-204ENST00000570546 ZZEF1O43149 2961 aa8.87□□□□□ -0.99
CIITA-204ENST00000570546 ASB16-AS1Q495Z4 193 aa8.87□□□□□ -0.99
CIITA-204ENST00000570546 NBEAL1Q6ZS30 2694 aa8.87□□□□□ -0.99
CIITA-204ENST00000570546 TNRC18O15417 2968 aaPredicted RBP8.86□□□□□ -0.99
CIITA-204ENST00000570546 FLNCQ14315 2725 aa8.86□□□□□ -0.99
CIITA-204ENST00000570546 COL6A5A8TX70 2615 aa8.86□□□□□ -0.99
CIITA-204ENST00000570546 UBR5O95071 2799 aaPredicted RBP8.86□□□□□ -0.99
CIITA-204ENST00000570546 EYSQ5T1H1 3165 aa8.85□□□□□ -0.99
CIITA-204ENST00000570546 H1FX-AS1Q4G0G2 97 aa8.84□□□□□ -0.99
CIITA-204ENST00000570546 LUZP6Q538Z0 58 aa8.84□□□□□ -0.99
CIITA-204ENST00000570546 TACC2O95359 2948 aa8.83□□□□□ -1
CIITA-204ENST00000570546 UTP20O75691 2785 aaKnown RBP8.83□□□□□ -1
CIITA-204ENST00000570546 Q5VSD8 79 aa8.79□□□□□ -1
CIITA-204ENST00000570546 SPATA8Q6RVD6 105 aa8.78□□□□□ -1
CIITA-204ENST00000570546 CAMK2N1Q7Z7J9 78 aa8.77□□□□□ -1.01
CIITA-204ENST00000570546 RPL37P61927 97 aaKnown RBP8.77□□□□□ -1.01
CIITA-204ENST00000570546 ITPR2Q14571 2701 aa8.77□□□□□ -1.01
CIITA-204ENST00000570546 HRNRQ86YZ3 2850 aaPredicted RBP8.76□□□□□ -1.01
CIITA-204ENST00000570546 MYO15AQ9UKN7 3530 aa8.74□□□□□ -1.01
CIITA-204ENST00000570546 A6NN06 94 aa8.74□□□□□ -1.01
CIITA-204ENST00000570546 ROMO1P60602 79 aa8.74□□□□□ -1.01
CIITA-204ENST00000570546 KRTAP13-2Q52LG2 175 aa8.74□□□□□ -1.01
CIITA-204ENST00000570546 CFAP47Q6ZTR5 3102 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms