RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 A0A1B0GUV1 79 aa6.74□□□□□ -1.33
CDH3-208ENST00000569036 C14orf132Q9NPU4 83 aa6.74□□□□□ -1.33
CDH3-208ENST00000569036 PRR34Q9NV39 138 aa6.74□□□□□ -1.33
CDH3-208ENST00000569036 IGLV10-54A0A075B6I4 117 aa6.73□□□□□ -1.33
CDH3-208ENST00000569036 A0A096LNI7 61 aa6.73□□□□□ -1.33
CDH3-208ENST00000569036 FAM19A5Q7Z5A7 132 aaPredicted RBP6.73□□□□□ -1.33
CDH3-208ENST00000569036 UBL5Q9BZL1 73 aa6.73□□□□□ -1.33
CDH3-208ENST00000569036 LOC110117498A0A087WWA1 95 aa6.72□□□□□ -1.33
CDH3-208ENST00000569036 LOC107984640A0A0U1RRK4 108 aa6.72□□□□□ -1.33
CDH3-208ENST00000569036 SS18Q15532 418 aa6.72□□□□□ -1.33
CDH3-208ENST00000569036 ATP5EP56381 51 aaPredicted RBP6.71□□□□□ -1.34
CDH3-208ENST00000569036 C6orf226Q5I0X4 101 aa6.7□□□□□ -1.34
CDH3-208ENST00000569036 LINC00269Q8N2A0 174 aa6.7□□□□□ -1.34
CDH3-208ENST00000569036 TOMM7Q9P0U1 55 aa6.7□□□□□ -1.34
CDH3-208ENST00000569036 TRAV7A0A075B6U4 112 aa6.69□□□□□ -1.34
CDH3-208ENST00000569036 LINC00959A0A1B0GUT2 108 aa6.69□□□□□ -1.34
CDH3-208ENST00000569036 ZNF561-AS1K7EIQ3 104 aa6.69□□□□□ -1.34
CDH3-208ENST00000569036 NDUFC1O43677 76 aa6.69□□□□□ -1.34
CDH3-208ENST00000569036 DIRC1Q969H9 104 aa6.69□□□□□ -1.34
CDH3-208ENST00000569036 IGKV3D-7A0A0C4DH55 119 aa6.68□□□□□ -1.34
CDH3-208ENST00000569036 KRTAP1-4P0C5Y4 121 aa6.68□□□□□ -1.34
CDH3-208ENST00000569036 CXCL6P80162 114 aa6.68□□□□□ -1.34
CDH3-208ENST00000569036 LINC00474Q9P2X8 69 aa6.68□□□□□ -1.34
CDH3-208ENST00000569036 H0Y9J4 135 aa6.67□□□□□ -1.34
CDH3-208ENST00000569036 NCR3O14931 201 aa6.67□□□□□ -1.34
CDH3-208ENST00000569036 C15orf56Q8N910 161 aa6.67□□□□□ -1.34
CDH3-208ENST00000569036 KLKP1Q107X0 134 aa6.66□□□□□ -1.34
CDH3-208ENST00000569036 SERP1Q9Y6X1 66 aa6.66□□□□□ -1.34
CDH3-208ENST00000569036 IGLV4-60A0A075B6I1 120 aa6.65□□□□□ -1.34
CDH3-208ENST00000569036 FAM236DA0A1B0GTK5 79 aa6.65□□□□□ -1.34
CDH3-208ENST00000569036 FAM236CP0DP71 79 aa6.65□□□□□ -1.34
CDH3-208ENST00000569036 PFN2P35080 140 aa6.65□□□□□ -1.34
CDH3-208ENST00000569036 TPRXLQ17RH7 258 aa6.65□□□□□ -1.34
CDH3-208ENST00000569036 C1orf137Q5JT78 98 aa6.65□□□□□ -1.34
CDH3-208ENST00000569036 CD164L2Q6UWJ8 174 aa6.65□□□□□ -1.34
CDH3-208ENST00000569036 TRBV7-6A0A0J9YX20 115 aa6.64□□□□□ -1.35
CDH3-208ENST00000569036 RBM3P98179 157 aaKnown RBP6.64□□□□□ -1.35
CDH3-208ENST00000569036 REG3AQ06141 175 aa6.64□□□□□ -1.35
CDH3-208ENST00000569036 HIGD2BQ4VC39 106 aa6.64□□□□□ -1.35
CDH3-208ENST00000569036 C9orf129Q5T035 196 aaKnown RBP6.64□□□□□ -1.35
CDH3-208ENST00000569036 LINC00575Q6W349 94 aa6.64□□□□□ -1.35
CDH3-208ENST00000569036 Q6ZQT0 140 aa6.64□□□□□ -1.35
CDH3-208ENST00000569036 ERC2-IT1O76042 136 aa6.63□□□□□ -1.35
CDH3-208ENST00000569036 IGLV7-43P04211 117 aa6.63□□□□□ -1.35
CDH3-208ENST00000569036 KRTAP4-1Q9BYQ7 146 aa6.63□□□□□ -1.35
CDH3-208ENST00000569036 SSPOA2VEC9 5147 aa6.62□□□□□ -1.35
CDH3-208ENST00000569036 A0A087WVE0 104 aa6.62□□□□□ -1.35
CDH3-208ENST00000569036 GVQW2A0A096LPI5 108 aaPredicted RBP6.62□□□□□ -1.35
CDH3-208ENST00000569036 XCL1P47992 114 aa6.61□□□□□ -1.35
CDH3-208ENST00000569036 KIAA0087Q14695 138 aa6.61□□□□□ -1.35
CDH3-208ENST00000569036 LCE2CQ5TA81 110 aa6.61□□□□□ -1.35
CDH3-208ENST00000569036 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.61□□□□□ -1.35
CDH3-208ENST00000569036 DSCR8Q96T75 97 aa6.61□□□□□ -1.35
CDH3-208ENST00000569036 LORP23490 312 aaPredicted RBP6.6□□□□□ -1.35
CDH3-208ENST00000569036 RETNLBQ9BQ08 111 aa6.6□□□□□ -1.35
CDH3-208ENST00000569036 A0A1B0GW54 56 aa6.59□□□□□ -1.35
CDH3-208ENST00000569036 IGLV6-57P01721 117 aa6.59□□□□□ -1.35
CDH3-208ENST00000569036 PKIGQ9Y2B9 76 aa6.59□□□□□ -1.35
CDH3-208ENST00000569036 IGKV3OR2-268A0A0C4DH90 116 aa6.58□□□□□ -1.36
CDH3-208ENST00000569036 A0A1W2PNN7 141 aa6.58□□□□□ -1.36
CDH3-208ENST00000569036 C6orf99Q4VX62 202 aa6.58□□□□□ -1.36
CDH3-208ENST00000569036 Q5XG85 94 aa6.58□□□□□ -1.36
CDH3-208ENST00000569036 CYSTM1Q9H1C7 97 aa6.58□□□□□ -1.36
CDH3-208ENST00000569036 TRAV23DV6A0A075B6W5 121 aa6.57□□□□□ -1.36
CDH3-208ENST00000569036 SMIM26A0A096LP01 95 aa6.57□□□□□ -1.36
CDH3-208ENST00000569036 H7BZZ5 65 aa6.57□□□□□ -1.36
CDH3-208ENST00000569036 MT1HP80294 61 aa6.57□□□□□ -1.36
CDH3-208ENST00000569036 C20orf197Q8N268 126 aa6.57□□□□□ -1.36
CDH3-208ENST00000569036 USH2AO75445 5202 aa6.57□□□□□ -1.36
CDH3-208ENST00000569036 FCGBPQ9Y6R7 5405 aaPredicted RBP6.56□□□□□ -1.36
CDH3-208ENST00000569036 F8WDY8 70 aa6.56□□□□□ -1.36
CDH3-208ENST00000569036 KRTAP10-6P60371 365 aaPredicted RBP6.56□□□□□ -1.36
CDH3-208ENST00000569036 Q6ZVQ6 151 aa6.56□□□□□ -1.36
CDH3-208ENST00000569036 FAM19A1Q7Z5A9 133 aa6.56□□□□□ -1.36
CDH3-208ENST00000569036 CHCHD10Q8WYQ3 142 aaPredicted RBP6.56□□□□□ -1.36
CDH3-208ENST00000569036 LAMTOR3Q9UHA4 124 aa6.56□□□□□ -1.36
CDH3-208ENST00000569036 TRBV7-4A0A0J9YYF1 115 aa6.55□□□□□ -1.36
CDH3-208ENST00000569036 PHF5AQ7RTV0 110 aaKnown RBP6.55□□□□□ -1.36
CDH3-208ENST00000569036 IGLV7-46A0A075B6I9 117 aa6.54□□□□□ -1.36
CDH3-208ENST00000569036 ASB16-AS1Q495Z4 193 aa6.54□□□□□ -1.36
CDH3-208ENST00000569036 SPAG11BQ08648 103 aa6.53□□□□□ -1.36
CDH3-208ENST00000569036 PRO0628Q9UI54 55 aa6.53□□□□□ -1.36
CDH3-208ENST00000569036 SYNE2Q8WXH0 6885 aaKnown RBP6.52□□□□□ -1.37
CDH3-208ENST00000569036 COX7BP24311 80 aa6.52□□□□□ -1.37
CDH3-208ENST00000569036 C9orf116Q5BN46 136 aaPredicted RBP6.52□□□□□ -1.37
CDH3-208ENST00000569036 KRTAP11-1Q8IUC1 163 aa6.52□□□□□ -1.37
CDH3-208ENST00000569036 ELOF1P60002 83 aaKnown RBP6.51□□□□□ -1.37
CDH3-208ENST00000569036 KRTAP19-2Q3LHN2 52 aa6.5□□□□□ -1.37
CDH3-208ENST00000569036 Q6ZQY7 126 aa6.5□□□□□ -1.37
CDH3-208ENST00000569036 A0A087X002 238 aa6.48□□□□□ -1.37
CDH3-208ENST00000569036 ZNF73O43830 326 aaPredicted RBP6.48□□□□□ -1.37
CDH3-208ENST00000569036 C4orf26Q17RF5 130 aa6.48□□□□□ -1.37
CDH3-208ENST00000569036 HRCT1Q6UXD1 115 aa6.48□□□□□ -1.37
CDH3-208ENST00000569036 M0R378 163 aa6.47□□□□□ -1.37
CDH3-208ENST00000569036 NREPQ16612 68 aa6.47□□□□□ -1.37
CDH3-208ENST00000569036 MACF1Q9UPN3 7388 aaKnown RBP6.47□□□□□ -1.37
CDH3-208ENST00000569036 F8WEM9 126 aa6.46□□□□□ -1.38
CDH3-208ENST00000569036 SYCNQ0VAF6 134 aa6.46□□□□□ -1.38
CDH3-208ENST00000569036 TYMSOSQ8TAI1 123 aa6.46□□□□□ -1.38
CDH3-208ENST00000569036 TMEM254Q8TBM7 123 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms