RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CMTM2Q8TAZ6 248 aa1.49□□□□□ -2.17
VPS35-209ENST00000568642 DMAC1Q96GE9 116 aa1.49□□□□□ -2.17
VPS35-209ENST00000568642 MGST2Q99735 147 aa1.49□□□□□ -2.17
VPS35-209ENST00000568642 MRPL36Q9P0J6 103 aaKnown RBP1.49□□□□□ -2.17
VPS35-209ENST00000568642 TRBV6-7A0A0A0MS04 114 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 TRBV6-4A0A1B0GX49 114 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 FAM223BA6NKX1 122 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 NDUFC1O43677 76 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 KRTAP10-4P60372 401 aaPredicted RBP1.48□□□□□ -2.17
VPS35-209ENST00000568642 ADIRFQ15847 76 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 ZNF56Q15929 161 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 SPATA45Q537H7 98 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 C10orf55Q5SWW7 151 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 SFTA2Q6UW10 78 aa1.48□□□□□ -2.17
VPS35-209ENST00000568642 LINC00322Q6ZN03 302 aaPredicted RBP1.48□□□□□ -2.17
VPS35-209ENST00000568642 TRBV25-1A0A075B6N4 114 aa1.47□□□□□ -2.17
VPS35-209ENST00000568642 CCL3L1P16619 93 aa1.47□□□□□ -2.17
VPS35-209ENST00000568642 MANBALQ9NQG1 85 aa1.47□□□□□ -2.17
VPS35-209ENST00000568642 LINC00846Q9NV44 126 aa1.47□□□□□ -2.17
VPS35-209ENST00000568642 PLAC8Q9NZF1 115 aa1.47□□□□□ -2.17
VPS35-209ENST00000568642 PRO1854Q9UHT4 67 aa1.47□□□□□ -2.17
VPS35-209ENST00000568642 TMEM14DPA8MWL7 114 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 CHKB-CPT1BH3BT56 60 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 HMGN4O00479 90 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 BCE1O60756 84 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 PRB3Q04118 309 aaPredicted RBP1.46□□□□□ -2.18
VPS35-209ENST00000568642 ELOBQ15370 118 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 PMCHL1Q16048 86 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 KRTAP13-3Q3SY46 172 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 C10orf128Q5T292 105 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 LCE1CQ5T751 118 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 LCE1BQ5T7P3 118 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 LINC00304Q8N9R0 145 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 TMEM14BQ9NUH8 114 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 PSENENQ9NZ42 101 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 ORMDL1Q9P0S3 153 aa1.46□□□□□ -2.18
VPS35-209ENST00000568642 AHNAK2Q8IVF2 5795 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 IGKV2D-24A0A075B6R9 120 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 TRAV23DV6A0A075B6W5 121 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 IGLV3-32A0A0A0MS00 114 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 DEFB135Q30KP9 77 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 PRR9Q5T870 116 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 RPL7L1Q6DKI1 246 aaKnown RBP1.45□□□□□ -2.18
VPS35-209ENST00000568642 C20orf197Q8N268 126 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 AMELXQ99217 191 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 TP53TG3Q9ULZ0 132 aa1.45□□□□□ -2.18
VPS35-209ENST00000568642 IQCF6A8MYZ5 107 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 F8WEM9 126 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 MRPL33O75394 65 aaKnown RBP1.44□□□□□ -2.18
VPS35-209ENST00000568642 PPYP01298 95 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 EDDM3BP56851 147 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 XAF1Q6GPH4 301 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 LINC00643Q86TS7 51 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 ZNF563Q8TA94 476 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 LENEPQ9Y5L5 61 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 DSTQ03001 7570 aaKnown RBP1.44□□□□□ -2.18
VPS35-209ENST00000568642 MUC17Q685J3 4493 aa1.44□□□□□ -2.18
VPS35-209ENST00000568642 A6NIN4 97 aa1.43□□□□□ -2.18
VPS35-209ENST00000568642 JMJD7-PLA2G4BH0Y9G9 81 aa1.43□□□□□ -2.18
VPS35-209ENST00000568642 CCL18P55774 89 aa1.43□□□□□ -2.18
VPS35-209ENST00000568642 LCE3EQ5T5B0 92 aa1.43□□□□□ -2.18
VPS35-209ENST00000568642 HCP5Q6MZN7 132 aa1.43□□□□□ -2.18
VPS35-209ENST00000568642 C4orf3Q8WVX3 66 aa1.43□□□□□ -2.18
VPS35-209ENST00000568642 S100ZQ8WXG8 99 aa1.43□□□□□ -2.18
VPS35-209ENST00000568642 WFDC10AQ9H1F0 79 aa1.43□□□□□ -2.18
VPS35-209ENST00000568642 MDN1Q9NU22 5596 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 IGLV4-60A0A075B6I1 120 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 PIGBOS1A0A0B4J2F0 54 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 INE1O15225 51 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 ELOF1P60002 83 aaKnown RBP1.42□□□□□ -2.18
VPS35-209ENST00000568642 FXYD3Q14802 87 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 TMEM170BQ5T4T1 132 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 C5orf56Q8N8D9 126 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 ZNF625Q96I27 306 aaPredicted RBP1.42□□□□□ -2.18
VPS35-209ENST00000568642 Q96NJ1 140 aa1.42□□□□□ -2.18
VPS35-209ENST00000568642 IGKV2-29A2NJV5 120 aaPredicted RBP1.41□□□□□ -2.18
VPS35-209ENST00000568642 C7orf77A4D0Y5 90 aa1.41□□□□□ -2.18
VPS35-209ENST00000568642 H3BRN7 92 aa1.41□□□□□ -2.18
VPS35-209ENST00000568642 HMGN2P05204 90 aaKnown RBP1.41□□□□□ -2.18
VPS35-209ENST00000568642 COX6CP09669 75 aa1.41□□□□□ -2.18
VPS35-209ENST00000568642 RPL37AP61513 92 aaKnown RBP1.41□□□□□ -2.18
VPS35-209ENST00000568642 KRTAP5-10Q6L8G5 202 aa1.41□□□□□ -2.18
VPS35-209ENST00000568642 Q86TA4 180 aa1.41□□□□□ -2.18
VPS35-209ENST00000568642 COX7B2Q8TF08 81 aa1.41□□□□□ -2.18
VPS35-209ENST00000568642 TVP23CQ96ET8 276 aa1.41□□□□□ -2.18
VPS35-209ENST00000568642 LINC00472Q9H8W2 130 aa1.41□□□□□ -2.18
VPS35-209ENST00000568642 LOC110117498A0A087WWA1 95 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 A0A087WWC5 75 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 DEFB131BA0A096LNP1 70 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 HIGD1CA8MV81 97 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 DEFB4AO15263 64 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 IGLV6-57P01721 117 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 ZNF137PP52743 207 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 MT1HP80294 61 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 IGFL1Q6UW32 110 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 PP632Q6XCG6 107 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 SPRR4Q96PI1 79 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 KLK9Q9UKQ9 250 aa1.4□□□□□ -2.19
VPS35-209ENST00000568642 HMCN1Q96RW7 5635 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms