RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SPTBN4Q9H254 2564 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 MAST4O15021 2626 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 ETDCA0A1B0GVM5 59 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 MRPL33O75394 65 aaKnown RBP0.3□□□□□ -2.36
VPS35-207ENST00000568191 NDUFA3O95167 84 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 SPRR1BP22528 89 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 FCER1GP30273 86 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 SPRR1AP35321 89 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 LELP1Q5T871 98 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 COX6B2Q6YFQ2 88 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 DEFB105AQ8NG35 78 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 FXYD6Q9H0Q3 95 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 DEPDC5O75140 1603 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 ABCA5Q8WWZ7 1642 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 CDC42BPAQ5VT25 1732 aa0.3□□□□□ -2.36
VPS35-207ENST00000568191 SETXQ7Z333 2677 aaKnown RBP0.3□□□□□ -2.36
VPS35-207ENST00000568191 ANKHD1Q8IWZ3 2542 aaKnown RBP0.29□□□□□ -2.36
VPS35-207ENST00000568191 KIAA0586Q9BVV6 1533 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 ABCC8Q09428 1581 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 CSMD3Q7Z407 3707 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 K7EMI3 77 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 M0R1W7 72 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 H1FX-AS1Q4G0G2 97 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 KRTAP19-3Q7Z4W3 81 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 CDKN2A-AS1Q9UH64 79 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 APLNQ9ULZ1 77 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 MTORP42345 2549 aa0.29□□□□□ -2.36
VPS35-207ENST00000568191 AGLP35573 1532 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 EFCAB6Q5THR3 1501 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 FLNAP21333 2647 aaKnown RBP0.28□□□□□ -2.36
VPS35-207ENST00000568191 IGIPA6NJ69 53 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 H0YAA0 97 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 CRIP1P50238 77 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 LINC00158P58513 81 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 SERF2P84101 59 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 KLK9Q2XQG4 91 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 NCBP2-AS2Q69YL0 99 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 NMES1Q9C002 83 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 PRO3102Q9H379 93 aa0.28□□□□□ -2.36
VPS35-207ENST00000568191 IQGAP2Q13576 1575 aa0.28□□□□□ -2.37
VPS35-207ENST00000568191 IQGAP1P46940 1657 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 DDX60Q8IY21 1712 aaKnown RBP0.27□□□□□ -2.37
VPS35-207ENST00000568191 CCDC168Q8NDH2 2452 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 STAB2Q8WWQ8 2551 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 SNRPGP15A8MWD9 76 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 LOC730098B7Z3J9 87 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 KMT2DO14686 5537 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 DEFB109BQ30KR1 87 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 WFDC13Q8IUB5 93 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 FASNP49327 2511 aaKnown RBP0.27□□□□□ -2.37
VPS35-207ENST00000568191 LMO7Q8WWI1 1683 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 FAM208AQ9UK61 1670 aaKnown RBP0.27□□□□□ -2.37
VPS35-207ENST00000568191 AKAP13Q12802 2813 aa0.27□□□□□ -2.37
VPS35-207ENST00000568191 TLN2Q9Y4G6 2542 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 USP9XQ93008 2570 aaPredicted RBP0.26□□□□□ -2.37
VPS35-207ENST00000568191 FLNBO75369 2602 aaKnown RBP0.26□□□□□ -2.37
VPS35-207ENST00000568191 TENM4Q6N022 2769 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 OTOGQ6ZRI0 2925 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 GPR98Q8WXG9 6306 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 PHGR1C9JFL3 82 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 LYNX1G3V0Z9 82 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 SPINK4O60575 86 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 IAPPP10997 89 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 PLNP26678 52 aa0.26□□□□□ -2.37
VPS35-207ENST00000568191 TOP2AP11388 1531 aaKnown RBP0.26□□□□□ -2.37
VPS35-207ENST00000568191 GCN1Q92616 2671 aaKnown RBP0.26□□□□□ -2.37
VPS35-207ENST00000568191 ANK2Q01484 3957 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 PRRC2CQ9Y520 2896 aaKnown RBP0.25□□□□□ -2.37
VPS35-207ENST00000568191 NSD1Q96L73 2696 aaPredicted RBP0.25□□□□□ -2.37
VPS35-207ENST00000568191 SPTAN1Q13813 2472 aaKnown RBP0.25□□□□□ -2.37
VPS35-207ENST00000568191 SONP18583 2426 aaKnown RBP0.25□□□□□ -2.37
VPS35-207ENST00000568191 CEP250Q9BV73 2442 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 KRTAP2-3P0C7H8 128 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 DEFB130BP0DP73 79 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 DEFB130AP0DP74 79 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 KRTAP21-1Q3LI58 79 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 MINOS1Q5TGZ0 78 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 SPINK6Q6UWN8 80 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 KRTAP2-4Q9BYR9 128 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 KRTAP2-1Q9BYU5 128 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 CMC2Q9NRP2 79 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 PKD1L1Q8TDX9 2849 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 SRRM2Q9UQ35 2752 aaKnown RBP0.25□□□□□ -2.37
VPS35-207ENST00000568191 FLNCQ14315 2725 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 FRAS1Q86XX4 4008 aa0.25□□□□□ -2.37
VPS35-207ENST00000568191 H0YGX0 51 aa0.24□□□□□ -2.37
VPS35-207ENST00000568191 PRH1P02810 166 aa0.24□□□□□ -2.37
VPS35-207ENST00000568191 SMR3AQ99954 134 aa0.24□□□□□ -2.37
VPS35-207ENST00000568191 TMEM167BQ9NRX6 74 aa0.24□□□□□ -2.37
VPS35-207ENST00000568191 ABRACLQ9P1F3 81 aa0.24□□□□□ -2.37
VPS35-207ENST00000568191 C6orf48Q9UBA6 75 aa0.24□□□□□ -2.37
VPS35-207ENST00000568191 UTP20O75691 2785 aaKnown RBP0.24□□□□□ -2.37
VPS35-207ENST00000568191 MYO18BQ8IUG5 2567 aa0.24□□□□□ -2.37
VPS35-207ENST00000568191 TNXBP22105 4242 aa0.24□□□□□ -2.37
VPS35-207ENST00000568191 NF1P21359 2839 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 DOPEY1Q5JWR5 2465 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 SMIM27A0A1W2PRY6 76 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 SPINK1P00995 79 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 RPS27P42677 84 aaKnown RBP0.23□□□□□ -2.37
VPS35-207ENST00000568191 RPS27LQ71UM5 84 aaKnown RBP0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms