RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 M0R2N4 97 aa4.6□□□□□ -1.67
HERPUD1-209ENST00000564678 CXCL6P80162 114 aa4.6□□□□□ -1.67
HERPUD1-209ENST00000564678 Q9BRP9 147 aa4.6□□□□□ -1.67
HERPUD1-209ENST00000564678 STAB2Q8WWQ8 2551 aa4.6□□□□□ -1.67
HERPUD1-209ENST00000564678 A0A096LNI7 61 aa4.6□□□□□ -1.67
HERPUD1-209ENST00000564678 CCDC179H3BU77 68 aa4.6□□□□□ -1.67
HERPUD1-209ENST00000564678 UQCRQO14949 82 aa4.6□□□□□ -1.67
HERPUD1-209ENST00000564678 C9orf163Q8N9P6 203 aa4.6□□□□□ -1.67
HERPUD1-209ENST00000564678 COL7A1Q02388 2944 aa4.59□□□□□ -1.67
HERPUD1-209ENST00000564678 FBN3Q75N90 2809 aa4.59□□□□□ -1.67
HERPUD1-209ENST00000564678 LRCOL1A6NCL2 159 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 NDUFS5O43920 106 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 BCE1O60756 84 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 COX7CP15954 63 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 C3orf22Q8N5N4 141 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 RBM12B-AS1Q9P1G2 102 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 LINC00474Q9P2X8 69 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 A0A1W2PNN7 141 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 DEFB105AQ8NG35 78 aa4.58□□□□□ -1.68
HERPUD1-209ENST00000564678 PLECQ15149 4684 aaKnown RBP4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 A0A087WVE0 104 aa4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 UBE2BP63146 152 aa4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 HAMPP81172 84 aa4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 Q6ZRN7 208 aaPredicted RBP4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 DNAH10Q8IVF4 4471 aa4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 IGKV2-24A0A0C4DH68 120 aa4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 LYSTQ99698 3801 aa4.57□□□□□ -1.68
HERPUD1-209ENST00000564678 FAM236DA0A1B0GTK5 79 aa4.56□□□□□ -1.68
HERPUD1-209ENST00000564678 FAM236CP0DP71 79 aa4.56□□□□□ -1.68
HERPUD1-209ENST00000564678 SERP2Q8N6R1 65 aa4.56□□□□□ -1.68
HERPUD1-209ENST00000564678 FUSP35637 526 aaKnown RBP eCLIP4.55□□□□□ -1.68
HERPUD1-209ENST00000564678 NREPQ16612 68 aa4.55□□□□□ -1.68
HERPUD1-209ENST00000564678 ERC2-IT1O76042 136 aa4.55□□□□□ -1.68
HERPUD1-209ENST00000564678 CSMD3Q7Z407 3707 aa4.55□□□□□ -1.68
HERPUD1-209ENST00000564678 CRYGAP11844 174 aa4.54□□□□□ -1.68
HERPUD1-209ENST00000564678 C1orf137Q5JT78 98 aa4.54□□□□□ -1.68
HERPUD1-209ENST00000564678 C9orf153Q5TBE3 101 aa4.54□□□□□ -1.68
HERPUD1-209ENST00000564678 ST20-AS1Q8NBB2 130 aa4.54□□□□□ -1.68
HERPUD1-209ENST00000564678 SPRR4Q96PI1 79 aa4.54□□□□□ -1.68
HERPUD1-209ENST00000564678 PMAIP1Q13794 54 aa4.54□□□□□ -1.68
HERPUD1-209ENST00000564678 DNAH7Q8WXX0 4024 aa4.53□□□□□ -1.68
HERPUD1-209ENST00000564678 SMIM29Q86T20 159 aa4.53□□□□□ -1.68
HERPUD1-209ENST00000564678 Q8NBF4 154 aa4.53□□□□□ -1.68
HERPUD1-209ENST00000564678 VPS13DQ5THJ4 4388 aa4.53□□□□□ -1.68
HERPUD1-209ENST00000564678 EPM2AB3EWF7 344 aa4.53□□□□□ -1.68
HERPUD1-209ENST00000564678 F8WEM9 126 aa4.53□□□□□ -1.68
HERPUD1-209ENST00000564678 MEGF8Q7Z7M0 2845 aa4.52□□□□□ -1.69
HERPUD1-209ENST00000564678 IGLV8-61A0A075B6I0 122 aa4.52□□□□□ -1.69
HERPUD1-209ENST00000564678 A0A1W2PNM2 257 aa4.52□□□□□ -1.69
HERPUD1-209ENST00000564678 PHF5AQ7RTV0 110 aaKnown RBP4.52□□□□□ -1.69
HERPUD1-209ENST00000564678 CHTF8P0CG12 524 aa4.51□□□□□ -1.69
HERPUD1-209ENST00000564678 A0A087WTM6 91 aa4.51□□□□□ -1.69
HERPUD1-209ENST00000564678 A0A087X002 238 aa4.51□□□□□ -1.69
HERPUD1-209ENST00000564678 BPY2O14599 106 aa4.51□□□□□ -1.69
HERPUD1-209ENST00000564678 SPRR1BP22528 89 aa4.51□□□□□ -1.69
HERPUD1-209ENST00000564678 PRLHP81277 87 aa4.51□□□□□ -1.69
HERPUD1-209ENST00000564678 Q6ZR54 194 aa4.51□□□□□ -1.69
HERPUD1-209ENST00000564678 KRTAP4-11Q9BYQ6 195 aa4.51□□□□□ -1.69
HERPUD1-209ENST00000564678 STARD9Q9P2P6 4700 aa4.5□□□□□ -1.69
HERPUD1-209ENST00000564678 TRAV7A0A075B6U4 112 aa4.5□□□□□ -1.69
HERPUD1-209ENST00000564678 A0A0U1RQV1 116 aa4.5□□□□□ -1.69
HERPUD1-209ENST00000564678 C3orf84H3BNL1 204 aa4.5□□□□□ -1.69
HERPUD1-209ENST00000564678 HIGD2AQ9BW72 106 aa4.5□□□□□ -1.69
HERPUD1-209ENST00000564678 PSPHP1O15172 72 aa4.49□□□□□ -1.69
HERPUD1-209ENST00000564678 SPACA4Q8TDM5 124 aa4.49□□□□□ -1.69
HERPUD1-209ENST00000564678 DPH3Q96FX2 82 aa4.49□□□□□ -1.69
HERPUD1-209ENST00000564678 IGHV6-1A0A0B4J1U7 121 aa4.48□□□□□ -1.69
HERPUD1-209ENST00000564678 UBE2AP49459 152 aa4.48□□□□□ -1.69
HERPUD1-209ENST00000564678 KRTAP11-1Q8IUC1 163 aa4.48□□□□□ -1.69
HERPUD1-209ENST00000564678 TENM2Q9NT68 2774 aa4.48□□□□□ -1.69
HERPUD1-209ENST00000564678 IGKV4-1P06312 121 aa4.48□□□□□ -1.69
HERPUD1-209ENST00000564678 IGFL1Q6UW32 110 aa4.48□□□□□ -1.69
HERPUD1-209ENST00000564678 SCXQ7RTU7 201 aa4.48□□□□□ -1.69
HERPUD1-209ENST00000564678 NOTCH2NLQ7Z3S9 236 aa4.48□□□□□ -1.69
HERPUD1-209ENST00000564678 PRR4Q16378 134 aa4.47□□□□□ -1.69
HERPUD1-209ENST00000564678 KRTAP13-1Q8IUC0 172 aa4.47□□□□□ -1.69
HERPUD1-209ENST00000564678 PANO1I0J062 215 aa4.47□□□□□ -1.69
HERPUD1-209ENST00000564678 C1orf134Q5TEV5 83 aa4.47□□□□□ -1.69
HERPUD1-209ENST00000564678 RTL8CO15255 209 aa4.46□□□□□ -1.7
HERPUD1-209ENST00000564678 TMEM258P61165 79 aa4.46□□□□□ -1.7
HERPUD1-209ENST00000564678 ZNF706Q9Y5V0 76 aaPredicted RBP4.45□□□□□ -1.7
HERPUD1-209ENST00000564678 PLAC8Q9NZF1 115 aa4.44□□□□□ -1.7
HERPUD1-209ENST00000564678 KMT2AQ03164 3969 aa4.44□□□□□ -1.7
HERPUD1-209ENST00000564678 KLKP1Q107X0 134 aa4.44□□□□□ -1.7
HERPUD1-209ENST00000564678 C20orf197Q8N268 126 aa4.44□□□□□ -1.7
HERPUD1-209ENST00000564678 Q8N9L7 120 aa4.44□□□□□ -1.7
HERPUD1-209ENST00000564678 DSCR10P59022 87 aa4.43□□□□□ -1.7
HERPUD1-209ENST00000564678 RPL37AP61513 92 aaKnown RBP4.43□□□□□ -1.7
HERPUD1-209ENST00000564678 DNAH17Q9UFH2 4485 aa4.43□□□□□ -1.7
HERPUD1-209ENST00000564678 HECTD4Q9Y4D8 3996 aa4.42□□□□□ -1.7
HERPUD1-209ENST00000564678 A0A087WSZ3 146 aa4.42□□□□□ -1.7
HERPUD1-209ENST00000564678 CYSTM1Q9H1C7 97 aa4.42□□□□□ -1.7
HERPUD1-209ENST00000564678 DNAH2Q9P225 4427 aa4.42□□□□□ -1.7
HERPUD1-209ENST00000564678 NDUFC1O43677 76 aa4.41□□□□□ -1.7
HERPUD1-209ENST00000564678 LY6G6CO95867 125 aa4.41□□□□□ -1.7
HERPUD1-209ENST00000564678 MP68P56378 58 aa4.41□□□□□ -1.7
HERPUD1-209ENST00000564678 RPS28P62857 69 aaKnown RBP4.41□□□□□ -1.7
HERPUD1-209ENST00000564678 LINC00483Q53H64 154 aa4.41□□□□□ -1.7
HERPUD1-209ENST00000564678 DNAH6Q9C0G6 4158 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms