RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 TLN1Q9Y490 2541 aaKnown RBP1.94□□□□□ -2.1
VPS35-203ENST00000562420 CACNA1BQ00975 2339 aa1.94□□□□□ -2.1
VPS35-203ENST00000562420 LOC400499M0QZD8 3231 aa1.94□□□□□ -2.1
VPS35-203ENST00000562420 K7EQZ3 153 aa1.94□□□□□ -2.1
VPS35-203ENST00000562420 P0C880 135 aa1.94□□□□□ -2.1
VPS35-203ENST00000562420 URB1O60287 2271 aaKnown RBP1.94□□□□□ -2.1
VPS35-203ENST00000562420 SPTBN4Q9H254 2564 aa1.94□□□□□ -2.1
VPS35-203ENST00000562420 PTPRQQ9UMZ3 2332 aa1.94□□□□□ -2.1
VPS35-203ENST00000562420 DEFB113Q30KQ7 82 aa1.93□□□□□ -2.1
VPS35-203ENST00000562420 RHPN1-AS1Q9BWJ2 59 aa1.93□□□□□ -2.1
VPS35-203ENST00000562420 TPRP12270 2363 aaKnown RBP1.93□□□□□ -2.1
VPS35-203ENST00000562420 DCHS1Q96JQ0 3298 aa1.93□□□□□ -2.1
VPS35-203ENST00000562420 PRRC2CQ9Y520 2896 aaKnown RBP1.92□□□□□ -2.1
VPS35-203ENST00000562420 IGKV2-24A0A0C4DH68 120 aa1.92□□□□□ -2.1
VPS35-203ENST00000562420 IGKV3OR2-268A0A0C4DH90 116 aa1.92□□□□□ -2.1
VPS35-203ENST00000562420 H3BUX3 64 aa1.92□□□□□ -2.1
VPS35-203ENST00000562420 COX6B2Q6YFQ2 88 aa1.92□□□□□ -2.1
VPS35-203ENST00000562420 SMG1Q96Q15 3661 aaKnown RBP1.92□□□□□ -2.1
VPS35-203ENST00000562420 SPTBN2O15020 2390 aa1.92□□□□□ -2.1
VPS35-203ENST00000562420 LY6G6CO95867 125 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 APELAP0DMC3 54 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 KRTAP10-10P60014 251 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 RPL37AP61513 92 aaKnown RBP1.91□□□□□ -2.1
VPS35-203ENST00000562420 PP632Q6XCG6 107 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 DEFB108BQ8NET1 73 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 LINC00472Q9H8W2 130 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 FRYQ5TBA9 3013 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 DMXL2Q8TDJ6 3036 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 KMT2BQ9UMN6 2715 aaPredicted RBP1.91□□□□□ -2.1
VPS35-203ENST00000562420 NCOR2Q9Y618 2525 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 BOD1L1Q8NFC6 3051 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 IGF2RP11717 2491 aa1.91□□□□□ -2.1
VPS35-203ENST00000562420 PLCE1Q9P212 2302 aa1.9□□□□□ -2.1
VPS35-203ENST00000562420 ACACBO00763 2458 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 NAV3Q8IVL0 2385 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 C6orf48Q9UBA6 75 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 COL6A6A6NMZ7 2263 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 ADGRG4Q8IZF6 3080 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 MGAQ8IWI9 3026 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 EPG5Q9HCE0 2579 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 CHD8Q9HCK8 2581 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 PKD1L2Q7Z442 2459 aa1.9□□□□□ -2.11
VPS35-203ENST00000562420 PIEZO2Q9H5I5 2752 aa1.89□□□□□ -2.11
VPS35-203ENST00000562420 ATMQ13315 3056 aa1.89□□□□□ -2.11
VPS35-203ENST00000562420 DOPEY1Q5JWR5 2465 aa1.89□□□□□ -2.11
VPS35-203ENST00000562420 WFDC10BQ8IUB3 73 aa1.89□□□□□ -2.11
VPS35-203ENST00000562420 CCL19Q99731 98 aa1.89□□□□□ -2.11
VPS35-203ENST00000562420 SORL1Q92673 2214 aa1.89□□□□□ -2.11
VPS35-203ENST00000562420 FAM208BQ5VWN6 2430 aa1.88□□□□□ -2.11
VPS35-203ENST00000562420 A0A087WTM6 91 aa1.88□□□□□ -2.11
VPS35-203ENST00000562420 SPRR1AP35321 89 aa1.88□□□□□ -2.11
VPS35-203ENST00000562420 Q6ZRX8 168 aa1.88□□□□□ -2.11
VPS35-203ENST00000562420 WFDC13Q8IUB5 93 aa1.88□□□□□ -2.11
VPS35-203ENST00000562420 BAHCC1Q9P281 2608 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 CREBBPQ92793 2442 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 A0A0G2JQZ4 141 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 PRB3Q04118 309 aaPredicted RBP1.87□□□□□ -2.11
VPS35-203ENST00000562420 SPINK13Q1W4C9 94 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 LINC00304Q8N9R0 145 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 DEFB104AQ8WTQ1 72 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 MRPL34Q9BQ48 92 aaKnown RBP1.87□□□□□ -2.11
VPS35-203ENST00000562420 PRO2289Q9P1D8 64 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 KALRNO60229 2985 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 NBASA2RRP1 2371 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 SPTBN1Q01082 2364 aaKnown RBP1.87□□□□□ -2.11
VPS35-203ENST00000562420 DSPP15924 2871 aaKnown RBP1.87□□□□□ -2.11
VPS35-203ENST00000562420 MYO18BQ8IUG5 2567 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 ABCA1O95477 2261 aa1.87□□□□□ -2.11
VPS35-203ENST00000562420 FASNP49327 2511 aaKnown RBP1.86□□□□□ -2.11
VPS35-203ENST00000562420 MED13LQ71F56 2210 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 CHD6Q8TD26 2715 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 HIVEP3Q5T1R4 2406 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 ABCA4P78363 2273 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 RELNP78509 3460 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 A0A1W2PNN7 141 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 C5orf56Q8N8D9 126 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 AKAP13Q12802 2813 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 ZZEF1O43149 2961 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 ZFHX3Q15911 3703 aa1.86□□□□□ -2.11
VPS35-203ENST00000562420 PCNX1Q96RV3 2341 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 COL12A1Q99715 3063 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 MMP24-AS1A0A0U1RRL7 71 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 PRB1P04280 392 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 SPRR1BP22528 89 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 CLPSL2Q6UWE3 100 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 Q96NJ1 140 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 PKDREJQ9NTG1 2253 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 LRRK2Q5S007 2527 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 ROS1P08922 2347 aa1.85□□□□□ -2.11
VPS35-203ENST00000562420 ITPR1Q14643 2758 aa1.84□□□□□ -2.11
VPS35-203ENST00000562420 PCOTHQ58A44 107 aa1.84□□□□□ -2.11
VPS35-203ENST00000562420 SPTAN1Q13813 2472 aaKnown RBP1.84□□□□□ -2.12
VPS35-203ENST00000562420 NAV2Q8IVL1 2488 aa1.84□□□□□ -2.12
VPS35-203ENST00000562420 WNK2Q9Y3S1 2297 aa1.84□□□□□ -2.12
VPS35-203ENST00000562420 USP24Q9UPU5 2620 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 NBDYA0A0U1RRE5 68 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 J3QKU1 62 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 IGFL1Q6UW32 110 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 UNQ6190/PRO20217Q6UXQ8 127 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 CRIPTQ9P021 101 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 319.1 ms