RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 SPRR1AP35321 89 aa8.21□□□□□ -1.09
CSPG4P11-201ENST00000560634 KRTAP1-1Q07627 177 aa8.21□□□□□ -1.09
CSPG4P11-201ENST00000560634 DMAC1Q96GE9 116 aa8.21□□□□□ -1.1
CSPG4P11-201ENST00000560634 TNP2Q05952 138 aa8.2□□□□□ -1.1
CSPG4P11-201ENST00000560634 FP248Q71RG6 208 aaPredicted RBP8.2□□□□□ -1.1
CSPG4P11-201ENST00000560634 FLNAP21333 2647 aaKnown RBP8.2□□□□□ -1.1
CSPG4P11-201ENST00000560634 CENPEQ02224 2701 aa8.19□□□□□ -1.1
CSPG4P11-201ENST00000560634 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.19□□□□□ -1.1
CSPG4P11-201ENST00000560634 ZCCHC13Q8WW36 166 aaKnown RBP8.19□□□□□ -1.1
CSPG4P11-201ENST00000560634 CFAP46Q8IYW2 2715 aa8.18□□□□□ -1.1
CSPG4P11-201ENST00000560634 SPRR1BP22528 89 aa8.18□□□□□ -1.1
CSPG4P11-201ENST00000560634 ITPR3Q14573 2671 aa8.17□□□□□ -1.1
CSPG4P11-201ENST00000560634 CSAG1Q6PB30 78 aa8.17□□□□□ -1.1
CSPG4P11-201ENST00000560634 PLAC8Q9NZF1 115 aa8.15□□□□□ -1.1
CSPG4P11-201ENST00000560634 ZNF292O60281 2723 aa8.15□□□□□ -1.1
CSPG4P11-201ENST00000560634 Q5VV11 94 aa8.14□□□□□ -1.11
CSPG4P11-201ENST00000560634 LINC00472Q9H8W2 130 aa8.13□□□□□ -1.11
CSPG4P11-201ENST00000560634 H3BS24 57 aa8.13□□□□□ -1.11
CSPG4P11-201ENST00000560634 A0A0A0MQY5 61 aa8.13□□□□□ -1.11
CSPG4P11-201ENST00000560634 DNAH14Q0VDD8 3507 aa8.11□□□□□ -1.11
CSPG4P11-201ENST00000560634 Q5W150 140 aa8.1□□□□□ -1.11
CSPG4P11-201ENST00000560634 PRAC1Q96KF2 57 aa8.09□□□□□ -1.11
CSPG4P11-201ENST00000560634 PRUNE2Q8WUY3 3088 aa8.08□□□□□ -1.12
CSPG4P11-201ENST00000560634 CYSTM1Q9H1C7 97 aa8.08□□□□□ -1.12
CSPG4P11-201ENST00000560634 SZT2Q5T011 3432 aa8.08□□□□□ -1.12
CSPG4P11-201ENST00000560634 Q8NDZ9 215 aa8.08□□□□□ -1.12
CSPG4P11-201ENST00000560634 XIRP2A4UGR9 3374 aa8.07□□□□□ -1.12
CSPG4P11-201ENST00000560634 S4R3F8 94 aa8.06□□□□□ -1.12
CSPG4P11-201ENST00000560634 AKAP13Q12802 2813 aa8.06□□□□□ -1.12
CSPG4P11-201ENST00000560634 SPINK7P58062 85 aa8.04□□□□□ -1.12
CSPG4P11-201ENST00000560634 TEP1Q99973 2627 aaKnown RBP8.03□□□□□ -1.12
CSPG4P11-201ENST00000560634 NBEAL1Q6ZS30 2694 aa8.02□□□□□ -1.13
CSPG4P11-201ENST00000560634 ASB16-AS1Q495Z4 193 aa8.02□□□□□ -1.13
CSPG4P11-201ENST00000560634 TRIOO75962 3097 aa8.02□□□□□ -1.13
CSPG4P11-201ENST00000560634 M0R2T5 61 aa8.02□□□□□ -1.13
CSPG4P11-201ENST00000560634 R4GN34 69 aa8□□□□□ -1.13
CSPG4P11-201ENST00000560634 RPL37P61927 97 aaKnown RBP7.99□□□□□ -1.13
CSPG4P11-201ENST00000560634 VPS13AQ96RL7 3174 aa7.98□□□□□ -1.13
CSPG4P11-201ENST00000560634 MGAQ8IWI9 3026 aa7.98□□□□□ -1.13
CSPG4P11-201ENST00000560634 NBEAQ8NFP9 2946 aa7.96□□□□□ -1.14
CSPG4P11-201ENST00000560634 CELSR3Q9NYQ7 3312 aa7.95□□□□□ -1.14
CSPG4P11-201ENST00000560634 DMBT1Q9UGM3 2413 aaPredicted RBP7.95□□□□□ -1.14
CSPG4P11-201ENST00000560634 VCANP13611 3396 aa7.94□□□□□ -1.14
CSPG4P11-201ENST00000560634 OXTP01178 125 aa7.94□□□□□ -1.14
CSPG4P11-201ENST00000560634 SEC61BP60468 96 aaKnown RBP7.94□□□□□ -1.14
CSPG4P11-201ENST00000560634 KRTAP26-1Q6PEX3 210 aa7.93□□□□□ -1.14
CSPG4P11-201ENST00000560634 SPTBN5Q9NRC6 3674 aaKnown RBP7.93□□□□□ -1.14
CSPG4P11-201ENST00000560634 ROMO1P60602 79 aa7.93□□□□□ -1.14
CSPG4P11-201ENST00000560634 FREM2Q5SZK8 3169 aa7.93□□□□□ -1.14
CSPG4P11-201ENST00000560634 CHD6Q8TD26 2715 aa7.92□□□□□ -1.14
CSPG4P11-201ENST00000560634 NOTCH1P46531 2555 aa7.92□□□□□ -1.14
CSPG4P11-201ENST00000560634 REV3LO60673 3130 aa7.91□□□□□ -1.14
CSPG4P11-201ENST00000560634 LAMA1P25391 3075 aa7.9□□□□□ -1.14
CSPG4P11-201ENST00000560634 Q6ZR54 194 aa7.9□□□□□ -1.15
CSPG4P11-201ENST00000560634 H1FX-AS1Q4G0G2 97 aa7.88□□□□□ -1.15
CSPG4P11-201ENST00000560634 WDFY4Q6ZS81 3184 aa7.87□□□□□ -1.15
CSPG4P11-201ENST00000560634 EYSQ5T1H1 3165 aa7.87□□□□□ -1.15
CSPG4P11-201ENST00000560634 STAB2Q8WWQ8 2551 aa7.87□□□□□ -1.15
CSPG4P11-201ENST00000560634 TNRC18O15417 2968 aaPredicted RBP7.87□□□□□ -1.15
CSPG4P11-201ENST00000560634 DSPP15924 2871 aaKnown RBP7.86□□□□□ -1.15
CSPG4P11-201ENST00000560634 KRTAP1-5Q9BYS1 174 aa7.86□□□□□ -1.15
CSPG4P11-201ENST00000560634 UNC79Q9P2D8 2635 aa7.84□□□□□ -1.15
CSPG4P11-201ENST00000560634 KRTAP29-1A8MX34 341 aaPredicted RBP7.84□□□□□ -1.15
CSPG4P11-201ENST00000560634 BAHCC1Q9P281 2608 aa7.84□□□□□ -1.15
CSPG4P11-201ENST00000560634 TEX15Q9BXT5 2789 aa7.83□□□□□ -1.16
CSPG4P11-201ENST00000560634 COL6A5A8TX70 2615 aa7.83□□□□□ -1.16
CSPG4P11-201ENST00000560634 KRTAP4-16G5E9R7 235 aaPredicted RBP7.82□□□□□ -1.16
CSPG4P11-201ENST00000560634 IGSF10Q6WRI0 2623 aa7.82□□□□□ -1.16
CSPG4P11-201ENST00000560634 SPEGQ15772 3267 aa7.81□□□□□ -1.16
CSPG4P11-201ENST00000560634 FRYQ5TBA9 3013 aa7.81□□□□□ -1.16
CSPG4P11-201ENST00000560634 M0QZ58 72 aa7.81□□□□□ -1.16
CSPG4P11-201ENST00000560634 KRTAP10-1P60331 282 aa7.76□□□□□ -1.17
CSPG4P11-201ENST00000560634 SPATA8Q6RVD6 105 aa7.76□□□□□ -1.17
CSPG4P11-201ENST00000560634 FRYLO94915 3013 aa7.76□□□□□ -1.17
CSPG4P11-201ENST00000560634 Q5VSD8 79 aa7.75□□□□□ -1.17
CSPG4P11-201ENST00000560634 MYO15AQ9UKN7 3530 aa7.74□□□□□ -1.17
CSPG4P11-201ENST00000560634 COL6A3P12111 3177 aa7.74□□□□□ -1.17
CSPG4P11-201ENST00000560634 GCN1Q92616 2671 aaKnown RBP7.73□□□□□ -1.17
CSPG4P11-201ENST00000560634 MAP1AP78559 2803 aaPredicted RBP7.72□□□□□ -1.17
CSPG4P11-201ENST00000560634 PANO1I0J062 215 aa7.71□□□□□ -1.17
CSPG4P11-201ENST00000560634 LCE6AA0A183 80 aa7.7□□□□□ -1.18
CSPG4P11-201ENST00000560634 KRTAP10-2P60368 255 aa7.7□□□□□ -1.18
CSPG4P11-201ENST00000560634 KRTAP16-1A8MUX0 517 aa7.69□□□□□ -1.18
CSPG4P11-201ENST00000560634 USP34Q70CQ2 3546 aa7.69□□□□□ -1.18
CSPG4P11-201ENST00000560634 ADM2Q7Z4H4 148 aa7.69□□□□□ -1.18
CSPG4P11-201ENST00000560634 PLAC4Q8WY50 150 aa7.68□□□□□ -1.18
CSPG4P11-201ENST00000560634 A6NN06 94 aa7.67□□□□□ -1.18
CSPG4P11-201ENST00000560634 KALRNO60229 2985 aa7.65□□□□□ -1.18
CSPG4P11-201ENST00000560634 UBR5O95071 2799 aaPredicted RBP7.63□□□□□ -1.19
CSPG4P11-201ENST00000560634 RPS29P62273 56 aaKnown RBP7.63□□□□□ -1.19
CSPG4P11-201ENST00000560634 A0A087X002 238 aa7.62□□□□□ -1.19
CSPG4P11-201ENST00000560634 KRTAP25-1Q3LHN0 102 aa7.62□□□□□ -1.19
CSPG4P11-201ENST00000560634 NOTCH2NLQ7Z3S9 236 aa7.59□□□□□ -1.19
CSPG4P11-201ENST00000560634 FLNCQ14315 2725 aa7.59□□□□□ -1.19
CSPG4P11-201ENST00000560634 BOD1L1Q8NFC6 3051 aa7.55□□□□□ -1.2
CSPG4P11-201ENST00000560634 ADGRG4Q8IZF6 3080 aa7.54□□□□□ -1.2
CSPG4P11-201ENST00000560634 NBEAL2Q6ZNJ1 2754 aa7.53□□□□□ -1.2
CSPG4P11-201ENST00000560634 NSD1Q96L73 2696 aaPredicted RBP7.52□□□□□ -1.21
CSPG4P11-201ENST00000560634 TACC2O95359 2948 aa7.51□□□□□ -1.21
CSPG4P11-201ENST00000560634 A8MUU9 505 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms