RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PTPRQ	Q9UMZ3	2332 aa		2.96	□□□□□ -1.94
SYNE2-223	ENST00000557005	ANK3	Q12955	4377 aa	Known RBP	2.95	□□□□□ -1.94
SYNE2-223	ENST00000557005	PLAC8	Q9NZF1	115 aa		2.95	□□□□□ -1.94
SYNE2-223	ENST00000557005	AKAP6	Q13023	2319 aa		2.95	□□□□□ -1.94
SYNE2-223	ENST00000557005	TNRC18	O15417	2968 aa	Predicted RBP	2.95	□□□□□ -1.94
SYNE2-223	ENST00000557005	DMXL2	Q8TDJ6	3036 aa		2.95	□□□□□ -1.94
SYNE2-223	ENST00000557005	WNK1	Q9H4A3	2382 aa		2.95	□□□□□ -1.94
SYNE2-223	ENST00000557005	DMAC1	Q96GE9	116 aa		2.94	□□□□□ -1.94
SYNE2-223	ENST00000557005		A0A1B0GU33	70 aa		2.94	□□□□□ -1.94
SYNE2-223	ENST00000557005	WWC2-AS2	Q96NR7	200 aa		2.94	□□□□□ -1.94
SYNE2-223	ENST00000557005	LRBA	P50851	2863 aa		2.94	□□□□□ -1.94
SYNE2-223	ENST00000557005	AKAP13	Q12802	2813 aa		2.93	□□□□□ -1.94
SYNE2-223	ENST00000557005	FRY	Q5TBA9	3013 aa		2.93	□□□□□ -1.94
SYNE2-223	ENST00000557005	RELN	P78509	3460 aa		2.92	□□□□□ -1.94
SYNE2-223	ENST00000557005	SPATA8	Q6RVD6	105 aa		2.91	□□□□□ -1.94
SYNE2-223	ENST00000557005	H1FX-AS1	Q4G0G2	97 aa		2.9	□□□□□ -1.95
SYNE2-223	ENST00000557005	CACNA1H	O95180	2353 aa		2.9	□□□□□ -1.95
SYNE2-223	ENST00000557005	LOC400499	M0QZD8	3231 aa		2.89	□□□□□ -1.95
SYNE2-223	ENST00000557005	KRTAP10-2	P60368	255 aa		2.88	□□□□□ -1.95
SYNE2-223	ENST00000557005		S4R3F8	94 aa		2.88	□□□□□ -1.95
SYNE2-223	ENST00000557005	BOD1L1	Q8NFC6	3051 aa		2.88	□□□□□ -1.95
SYNE2-223	ENST00000557005	DSP	P15924	2871 aa	Known RBP	2.87	□□□□□ -1.95
SYNE2-223	ENST00000557005	KRTAP13-1	Q8IUC0	172 aa		2.87	□□□□□ -1.95
SYNE2-223	ENST00000557005	ANK2	Q01484	3957 aa		2.87	□□□□□ -1.95
SYNE2-223	ENST00000557005	NBEA	Q8NFP9	2946 aa		2.87	□□□□□ -1.95
SYNE2-223	ENST00000557005	ROMO1	P60602	79 aa		2.86	□□□□□ -1.95
SYNE2-223	ENST00000557005	MGA	Q8IWI9	3026 aa		2.86	□□□□□ -1.95
SYNE2-223	ENST00000557005	KALRN	O60229	2985 aa		2.86	□□□□□ -1.95
SYNE2-223	ENST00000557005	KRTAP10-1	P60331	282 aa		2.86	□□□□□ -1.95
SYNE2-223	ENST00000557005	HIVEP2	P31629	2446 aa		2.86	□□□□□ -1.95
SYNE2-223	ENST00000557005	KRTAP25-1	Q3LHN0	102 aa		2.85	□□□□□ -1.95
SYNE2-223	ENST00000557005	ASB16-AS1	Q495Z4	193 aa		2.85	□□□□□ -1.95
SYNE2-223	ENST00000557005	NOTCH3	Q9UM47	2321 aa		2.85	□□□□□ -1.95
SYNE2-223	ENST00000557005	GVINP1	Q7Z2Y8	2422 aa		2.85	□□□□□ -1.95
SYNE2-223	ENST00000557005	MUC6	Q6W4X9	2439 aa		2.84	□□□□□ -1.95
SYNE2-223	ENST00000557005	SPTAN1	Q13813	2472 aa	Known RBP	2.84	□□□□□ -1.95
SYNE2-223	ENST00000557005	ANKRD17	O75179	2603 aa	Known RBP	2.84	□□□□□ -1.95
SYNE2-223	ENST00000557005		Q6ZRN7	208 aa	Predicted RBP	2.84	□□□□□ -1.96
SYNE2-223	ENST00000557005	CUBN	O60494	3623 aa		2.84	□□□□□ -1.96
SYNE2-223	ENST00000557005	IGF2R	P11717	2491 aa		2.83	□□□□□ -1.96
SYNE2-223	ENST00000557005	DNAH1	Q9P2D7	4330 aa		2.83	□□□□□ -1.96
SYNE2-223	ENST00000557005	LCE2B	O14633	110 aa		2.83	□□□□□ -1.96
SYNE2-223	ENST00000557005	PTPN13	Q12923	2485 aa		2.83	□□□□□ -1.96
SYNE2-223	ENST00000557005	CMYA5	Q8N3K9	4069 aa		2.83	□□□□□ -1.96
SYNE2-223	ENST00000557005	HRNR	Q86YZ3	2850 aa	Predicted RBP	2.83	□□□□□ -1.96
SYNE2-223	ENST00000557005	CSPG4	Q6UVK1	2322 aa		2.82	□□□□□ -1.96
SYNE2-223	ENST00000557005	PIEZO1	Q92508	2521 aa		2.82	□□□□□ -1.96
SYNE2-223	ENST00000557005	HIVEP3	Q5T1R4	2406 aa		2.82	□□□□□ -1.96
SYNE2-223	ENST00000557005	CACNA1A	O00555	2505 aa		2.82	□□□□□ -1.96
SYNE2-223	ENST00000557005	KRTAP13-2	Q52LG2	175 aa		2.81	□□□□□ -1.96
SYNE2-223	ENST00000557005	ANKRD11	Q6UB99	2663 aa	Predicted RBP	2.81	□□□□□ -1.96
SYNE2-223	ENST00000557005	NBAS	A2RRP1	2371 aa		2.81	□□□□□ -1.96
SYNE2-223	ENST00000557005	HUWE1	Q7Z6Z7	4374 aa	Known RBP	2.81	□□□□□ -1.96
SYNE2-223	ENST00000557005	SPG11	Q96JI7	2443 aa		2.8	□□□□□ -1.96
SYNE2-223	ENST00000557005	PRRC2C	Q9Y520	2896 aa	Known RBP	2.8	□□□□□ -1.96
SYNE2-223	ENST00000557005	RIF1	Q5UIP0	2472 aa	Known RBP	2.79	□□□□□ -1.96
SYNE2-223	ENST00000557005	NOTCH2	Q04721	2471 aa		2.79	□□□□□ -1.96
SYNE2-223	ENST00000557005	RPL37	P61927	97 aa	Known RBP	2.79	□□□□□ -1.96
SYNE2-223	ENST00000557005	ATM	Q13315	3056 aa		2.79	□□□□□ -1.96
SYNE2-223	ENST00000557005	DMXL1	Q9Y485	3027 aa		2.78	□□□□□ -1.96
SYNE2-223	ENST00000557005	ADGRG4	Q8IZF6	3080 aa		2.78	□□□□□ -1.97
SYNE2-223	ENST00000557005	MUC3A	Q02505	3323 aa		2.77	□□□□□ -1.97
SYNE2-223	ENST00000557005		A8MUU9	505 aa		2.76	□□□□□ -1.97
SYNE2-223	ENST00000557005	TACC2	O95359	2948 aa		2.76	□□□□□ -1.97
SYNE2-223	ENST00000557005	ALMS1	Q8TCU4	4167 aa		2.76	□□□□□ -1.97
SYNE2-223	ENST00000557005	CSMD2	Q7Z408	3487 aa		2.76	□□□□□ -1.97
SYNE2-223	ENST00000557005		Q6ZSA8	131 aa		2.75	□□□□□ -1.97
SYNE2-223	ENST00000557005	DCHS2	Q6V1P9	2916 aa		2.75	□□□□□ -1.97
SYNE2-223	ENST00000557005	DNAH3	Q8TD57	4116 aa		2.75	□□□□□ -1.97
SYNE2-223	ENST00000557005	COX6B2	Q6YFQ2	88 aa		2.75	□□□□□ -1.97
SYNE2-223	ENST00000557005		H0YAA0	97 aa		2.75	□□□□□ -1.97
SYNE2-223	ENST00000557005	FAM208B	Q5VWN6	2430 aa		2.74	□□□□□ -1.97
SYNE2-223	ENST00000557005	TLN1	Q9Y490	2541 aa	Known RBP	2.74	□□□□□ -1.97
SYNE2-223	ENST00000557005	NAV2	Q8IVL1	2488 aa		2.74	□□□□□ -1.97
SYNE2-223	ENST00000557005	NCOR2	Q9Y618	2525 aa		2.73	□□□□□ -1.97
SYNE2-223	ENST00000557005	LRRK2	Q5S007	2527 aa		2.73	□□□□□ -1.97
SYNE2-223	ENST00000557005	BDP1	A6H8Y1	2624 aa		2.73	□□□□□ -1.97
SYNE2-223	ENST00000557005	KRTAP16-1	A8MUX0	517 aa		2.73	□□□□□ -1.97
SYNE2-223	ENST00000557005		J3QL48	77 aa		2.72	□□□□□ -1.97
SYNE2-223	ENST00000557005		M0QZ58	72 aa		2.72	□□□□□ -1.97
SYNE2-223	ENST00000557005	C10orf95	Q9H7T3	257 aa		2.71	□□□□□ -1.97
SYNE2-223	ENST00000557005	CREBBP	Q92793	2442 aa		2.71	□□□□□ -1.98
SYNE2-223	ENST00000557005	CELSR1	Q9NYQ6	3014 aa		2.71	□□□□□ -1.98
SYNE2-223	ENST00000557005		Q5VSD8	79 aa		2.71	□□□□□ -1.98
SYNE2-223	ENST00000557005	NDUFAF8	A1L188	74 aa		2.71	□□□□□ -1.98
SYNE2-223	ENST00000557005	LUZP6	Q538Z0	58 aa		2.71	□□□□□ -1.98
SYNE2-223	ENST00000557005	TTC28	Q96AY4	2481 aa		2.71	□□□□□ -1.98
SYNE2-223	ENST00000557005	ZNF469	Q96JG9	3925 aa	Predicted RBP	2.7	□□□□□ -1.98
SYNE2-223	ENST00000557005	KRTAP13-3	Q3SY46	172 aa		2.7	□□□□□ -1.98
SYNE2-223	ENST00000557005	CAMK2N1	Q7Z7J9	78 aa		2.7	□□□□□ -1.98
SYNE2-223	ENST00000557005	FN1	P02751	2386 aa	Known RBP	2.7	□□□□□ -1.98
SYNE2-223	ENST00000557005	ZNF462	Q96JM2	2506 aa		2.69	□□□□□ -1.98
SYNE2-223	ENST00000557005	SON	P18583	2426 aa	Known RBP	2.69	□□□□□ -1.98
SYNE2-223	ENST00000557005	DOPEY1	Q5JWR5	2465 aa		2.69	□□□□□ -1.98
SYNE2-223	ENST00000557005	C2CD3	Q4AC94	2353 aa		2.69	□□□□□ -1.98
SYNE2-223	ENST00000557005	POLQ	O75417	2590 aa		2.69	□□□□□ -1.98
SYNE2-223	ENST00000557005	DNAH10	Q8IVF4	4471 aa		2.69	□□□□□ -1.98
SYNE2-223	ENST00000557005	RPS29	P62273	56 aa	Known RBP	2.69	□□□□□ -1.98
SYNE2-223	ENST00000557005	TRRAP	Q9Y4A5	3859 aa		2.68	□□□□□ -1.98
SYNE2-223	ENST00000557005	LCE2A	Q5TA79	106 aa	Predicted RBP	2.68	□□□□□ -1.98

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