RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 PTPRQQ9UMZ3 2332 aa2.96□□□□□ -1.94
SYNE2-223ENST00000557005 ANK3Q12955 4377 aaKnown RBP2.95□□□□□ -1.94
SYNE2-223ENST00000557005 PLAC8Q9NZF1 115 aa2.95□□□□□ -1.94
SYNE2-223ENST00000557005 AKAP6Q13023 2319 aa2.95□□□□□ -1.94
SYNE2-223ENST00000557005 TNRC18O15417 2968 aaPredicted RBP2.95□□□□□ -1.94
SYNE2-223ENST00000557005 DMXL2Q8TDJ6 3036 aa2.95□□□□□ -1.94
SYNE2-223ENST00000557005 WNK1Q9H4A3 2382 aa2.95□□□□□ -1.94
SYNE2-223ENST00000557005 DMAC1Q96GE9 116 aa2.94□□□□□ -1.94
SYNE2-223ENST00000557005 A0A1B0GU33 70 aa2.94□□□□□ -1.94
SYNE2-223ENST00000557005 WWC2-AS2Q96NR7 200 aa2.94□□□□□ -1.94
SYNE2-223ENST00000557005 LRBAP50851 2863 aa2.94□□□□□ -1.94
SYNE2-223ENST00000557005 AKAP13Q12802 2813 aa2.93□□□□□ -1.94
SYNE2-223ENST00000557005 FRYQ5TBA9 3013 aa2.93□□□□□ -1.94
SYNE2-223ENST00000557005 RELNP78509 3460 aa2.92□□□□□ -1.94
SYNE2-223ENST00000557005 SPATA8Q6RVD6 105 aa2.91□□□□□ -1.94
SYNE2-223ENST00000557005 H1FX-AS1Q4G0G2 97 aa2.9□□□□□ -1.95
SYNE2-223ENST00000557005 CACNA1HO95180 2353 aa2.9□□□□□ -1.95
SYNE2-223ENST00000557005 LOC400499M0QZD8 3231 aa2.89□□□□□ -1.95
SYNE2-223ENST00000557005 KRTAP10-2P60368 255 aa2.88□□□□□ -1.95
SYNE2-223ENST00000557005 S4R3F8 94 aa2.88□□□□□ -1.95
SYNE2-223ENST00000557005 BOD1L1Q8NFC6 3051 aa2.88□□□□□ -1.95
SYNE2-223ENST00000557005 DSPP15924 2871 aaKnown RBP2.87□□□□□ -1.95
SYNE2-223ENST00000557005 KRTAP13-1Q8IUC0 172 aa2.87□□□□□ -1.95
SYNE2-223ENST00000557005 ANK2Q01484 3957 aa2.87□□□□□ -1.95
SYNE2-223ENST00000557005 NBEAQ8NFP9 2946 aa2.87□□□□□ -1.95
SYNE2-223ENST00000557005 ROMO1P60602 79 aa2.86□□□□□ -1.95
SYNE2-223ENST00000557005 MGAQ8IWI9 3026 aa2.86□□□□□ -1.95
SYNE2-223ENST00000557005 KALRNO60229 2985 aa2.86□□□□□ -1.95
SYNE2-223ENST00000557005 KRTAP10-1P60331 282 aa2.86□□□□□ -1.95
SYNE2-223ENST00000557005 HIVEP2P31629 2446 aa2.86□□□□□ -1.95
SYNE2-223ENST00000557005 KRTAP25-1Q3LHN0 102 aa2.85□□□□□ -1.95
SYNE2-223ENST00000557005 ASB16-AS1Q495Z4 193 aa2.85□□□□□ -1.95
SYNE2-223ENST00000557005 NOTCH3Q9UM47 2321 aa2.85□□□□□ -1.95
SYNE2-223ENST00000557005 GVINP1Q7Z2Y8 2422 aa2.85□□□□□ -1.95
SYNE2-223ENST00000557005 MUC6Q6W4X9 2439 aa2.84□□□□□ -1.95
SYNE2-223ENST00000557005 SPTAN1Q13813 2472 aaKnown RBP2.84□□□□□ -1.95
SYNE2-223ENST00000557005 ANKRD17O75179 2603 aaKnown RBP2.84□□□□□ -1.95
SYNE2-223ENST00000557005 Q6ZRN7 208 aaPredicted RBP2.84□□□□□ -1.96
SYNE2-223ENST00000557005 CUBNO60494 3623 aa2.84□□□□□ -1.96
SYNE2-223ENST00000557005 IGF2RP11717 2491 aa2.83□□□□□ -1.96
SYNE2-223ENST00000557005 DNAH1Q9P2D7 4330 aa2.83□□□□□ -1.96
SYNE2-223ENST00000557005 LCE2BO14633 110 aa2.83□□□□□ -1.96
SYNE2-223ENST00000557005 PTPN13Q12923 2485 aa2.83□□□□□ -1.96
SYNE2-223ENST00000557005 CMYA5Q8N3K9 4069 aa2.83□□□□□ -1.96
SYNE2-223ENST00000557005 HRNRQ86YZ3 2850 aaPredicted RBP2.83□□□□□ -1.96
SYNE2-223ENST00000557005 CSPG4Q6UVK1 2322 aa2.82□□□□□ -1.96
SYNE2-223ENST00000557005 PIEZO1Q92508 2521 aa2.82□□□□□ -1.96
SYNE2-223ENST00000557005 HIVEP3Q5T1R4 2406 aa2.82□□□□□ -1.96
SYNE2-223ENST00000557005 CACNA1AO00555 2505 aa2.82□□□□□ -1.96
SYNE2-223ENST00000557005 KRTAP13-2Q52LG2 175 aa2.81□□□□□ -1.96
SYNE2-223ENST00000557005 ANKRD11Q6UB99 2663 aaPredicted RBP2.81□□□□□ -1.96
SYNE2-223ENST00000557005 NBASA2RRP1 2371 aa2.81□□□□□ -1.96
SYNE2-223ENST00000557005 HUWE1Q7Z6Z7 4374 aaKnown RBP2.81□□□□□ -1.96
SYNE2-223ENST00000557005 SPG11Q96JI7 2443 aa2.8□□□□□ -1.96
SYNE2-223ENST00000557005 PRRC2CQ9Y520 2896 aaKnown RBP2.8□□□□□ -1.96
SYNE2-223ENST00000557005 RIF1Q5UIP0 2472 aaKnown RBP2.79□□□□□ -1.96
SYNE2-223ENST00000557005 NOTCH2Q04721 2471 aa2.79□□□□□ -1.96
SYNE2-223ENST00000557005 RPL37P61927 97 aaKnown RBP2.79□□□□□ -1.96
SYNE2-223ENST00000557005 ATMQ13315 3056 aa2.79□□□□□ -1.96
SYNE2-223ENST00000557005 DMXL1Q9Y485 3027 aa2.78□□□□□ -1.96
SYNE2-223ENST00000557005 ADGRG4Q8IZF6 3080 aa2.78□□□□□ -1.97
SYNE2-223ENST00000557005 MUC3AQ02505 3323 aa2.77□□□□□ -1.97
SYNE2-223ENST00000557005 A8MUU9 505 aa2.76□□□□□ -1.97
SYNE2-223ENST00000557005 TACC2O95359 2948 aa2.76□□□□□ -1.97
SYNE2-223ENST00000557005 ALMS1Q8TCU4 4167 aa2.76□□□□□ -1.97
SYNE2-223ENST00000557005 CSMD2Q7Z408 3487 aa2.76□□□□□ -1.97
SYNE2-223ENST00000557005 Q6ZSA8 131 aa2.75□□□□□ -1.97
SYNE2-223ENST00000557005 DCHS2Q6V1P9 2916 aa2.75□□□□□ -1.97
SYNE2-223ENST00000557005 DNAH3Q8TD57 4116 aa2.75□□□□□ -1.97
SYNE2-223ENST00000557005 COX6B2Q6YFQ2 88 aa2.75□□□□□ -1.97
SYNE2-223ENST00000557005 H0YAA0 97 aa2.75□□□□□ -1.97
SYNE2-223ENST00000557005 FAM208BQ5VWN6 2430 aa2.74□□□□□ -1.97
SYNE2-223ENST00000557005 TLN1Q9Y490 2541 aaKnown RBP2.74□□□□□ -1.97
SYNE2-223ENST00000557005 NAV2Q8IVL1 2488 aa2.74□□□□□ -1.97
SYNE2-223ENST00000557005 NCOR2Q9Y618 2525 aa2.73□□□□□ -1.97
SYNE2-223ENST00000557005 LRRK2Q5S007 2527 aa2.73□□□□□ -1.97
SYNE2-223ENST00000557005 BDP1A6H8Y1 2624 aa2.73□□□□□ -1.97
SYNE2-223ENST00000557005 KRTAP16-1A8MUX0 517 aa2.73□□□□□ -1.97
SYNE2-223ENST00000557005 J3QL48 77 aa2.72□□□□□ -1.97
SYNE2-223ENST00000557005 M0QZ58 72 aa2.72□□□□□ -1.97
SYNE2-223ENST00000557005 C10orf95Q9H7T3 257 aa2.71□□□□□ -1.97
SYNE2-223ENST00000557005 CREBBPQ92793 2442 aa2.71□□□□□ -1.98
SYNE2-223ENST00000557005 CELSR1Q9NYQ6 3014 aa2.71□□□□□ -1.98
SYNE2-223ENST00000557005 Q5VSD8 79 aa2.71□□□□□ -1.98
SYNE2-223ENST00000557005 NDUFAF8A1L188 74 aa2.71□□□□□ -1.98
SYNE2-223ENST00000557005 LUZP6Q538Z0 58 aa2.71□□□□□ -1.98
SYNE2-223ENST00000557005 TTC28Q96AY4 2481 aa2.71□□□□□ -1.98
SYNE2-223ENST00000557005 ZNF469Q96JG9 3925 aaPredicted RBP2.7□□□□□ -1.98
SYNE2-223ENST00000557005 KRTAP13-3Q3SY46 172 aa2.7□□□□□ -1.98
SYNE2-223ENST00000557005 CAMK2N1Q7Z7J9 78 aa2.7□□□□□ -1.98
SYNE2-223ENST00000557005 FN1P02751 2386 aaKnown RBP2.7□□□□□ -1.98
SYNE2-223ENST00000557005 ZNF462Q96JM2 2506 aa2.69□□□□□ -1.98
SYNE2-223ENST00000557005 SONP18583 2426 aaKnown RBP2.69□□□□□ -1.98
SYNE2-223ENST00000557005 DOPEY1Q5JWR5 2465 aa2.69□□□□□ -1.98
SYNE2-223ENST00000557005 C2CD3Q4AC94 2353 aa2.69□□□□□ -1.98
SYNE2-223ENST00000557005 POLQO75417 2590 aa2.69□□□□□ -1.98
SYNE2-223ENST00000557005 DNAH10Q8IVF4 4471 aa2.69□□□□□ -1.98
SYNE2-223ENST00000557005 RPS29P62273 56 aaKnown RBP2.69□□□□□ -1.98
SYNE2-223ENST00000557005 TRRAPQ9Y4A5 3859 aa2.68□□□□□ -1.98
SYNE2-223ENST00000557005 LCE2AQ5TA79 106 aaPredicted RBP2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms