RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 XIRP2A4UGR9 3374 aa6.74□□□□□ -1.33
ACTN1-216ENST00000556083 TEP1Q99973 2627 aaKnown RBP6.73□□□□□ -1.33
ACTN1-216ENST00000556083 ZFHX4Q86UP3 3567 aa6.73□□□□□ -1.33
ACTN1-216ENST00000556083 SMR3BP02814 79 aaPredicted RBP6.73□□□□□ -1.33
ACTN1-216ENST00000556083 HRES1P13985 223 aa6.73□□□□□ -1.33
ACTN1-216ENST00000556083 LUZP6Q538Z0 58 aa6.73□□□□□ -1.33
ACTN1-216ENST00000556083 TNP2Q05952 138 aa6.71□□□□□ -1.33
ACTN1-216ENST00000556083 CASC10Q5T4H9 136 aa6.71□□□□□ -1.33
ACTN1-216ENST00000556083 LINC00483Q53H64 154 aa6.7□□□□□ -1.34
ACTN1-216ENST00000556083 CSAG1Q6PB30 78 aa6.7□□□□□ -1.34
ACTN1-216ENST00000556083 ZCCHC13Q8WW36 166 aaKnown RBP6.7□□□□□ -1.34
ACTN1-216ENST00000556083 WDFY4Q6ZS81 3184 aa6.69□□□□□ -1.34
ACTN1-216ENST00000556083 DMAC1Q96GE9 116 aa6.68□□□□□ -1.34
ACTN1-216ENST00000556083 A0A1B0GU33 70 aa6.68□□□□□ -1.34
ACTN1-216ENST00000556083 MAST4O15021 2626 aa6.68□□□□□ -1.34
ACTN1-216ENST00000556083 SEC61BP60468 96 aaKnown RBP6.68□□□□□ -1.34
ACTN1-216ENST00000556083 IGSF10Q6WRI0 2623 aa6.67□□□□□ -1.34
ACTN1-216ENST00000556083 Q75L30 129 aa6.67□□□□□ -1.34
ACTN1-216ENST00000556083 ANAPC11Q9NYG5 84 aa6.67□□□□□ -1.34
ACTN1-216ENST00000556083 LINC01558Q9Y6Z2 57 aa6.66□□□□□ -1.34
ACTN1-216ENST00000556083 GCN1Q92616 2671 aaKnown RBP6.66□□□□□ -1.34
ACTN1-216ENST00000556083 MGAM2Q2M2H8 2515 aa6.66□□□□□ -1.34
ACTN1-216ENST00000556083 MGAQ8IWI9 3026 aa6.65□□□□□ -1.35
ACTN1-216ENST00000556083 Q8N1X5 172 aa6.64□□□□□ -1.35
ACTN1-216ENST00000556083 MMP24-AS1A0A0U1RRL7 71 aa6.64□□□□□ -1.35
ACTN1-216ENST00000556083 FP248Q71RG6 208 aaPredicted RBP6.64□□□□□ -1.35
ACTN1-216ENST00000556083 CAMK2N1Q7Z7J9 78 aa6.64□□□□□ -1.35
ACTN1-216ENST00000556083 ITPR3Q14573 2671 aa6.63□□□□□ -1.35
ACTN1-216ENST00000556083 FREM2Q5SZK8 3169 aa6.63□□□□□ -1.35
ACTN1-216ENST00000556083 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.63□□□□□ -1.35
ACTN1-216ENST00000556083 PRR26Q8N8Z3 221 aa6.63□□□□□ -1.35
ACTN1-216ENST00000556083 ATRQ13535 2644 aa6.63□□□□□ -1.35
ACTN1-216ENST00000556083 AKAP13Q12802 2813 aa6.63□□□□□ -1.35
ACTN1-216ENST00000556083 DNAH14Q0VDD8 3507 aa6.62□□□□□ -1.35
ACTN1-216ENST00000556083 A0A0G2JQZ4 141 aa6.61□□□□□ -1.35
ACTN1-216ENST00000556083 LINC00472Q9H8W2 130 aa6.6□□□□□ -1.35
ACTN1-216ENST00000556083 A0A0A0MQY5 61 aa6.6□□□□□ -1.35
ACTN1-216ENST00000556083 LINC01554Q52M75 96 aa6.59□□□□□ -1.35
ACTN1-216ENST00000556083 BPTFQ12830 3046 aa6.58□□□□□ -1.36
ACTN1-216ENST00000556083 S4R3F8 94 aa6.57□□□□□ -1.36
ACTN1-216ENST00000556083 FLNAP21333 2647 aaKnown RBP6.56□□□□□ -1.36
ACTN1-216ENST00000556083 UNC79Q9P2D8 2635 aa6.56□□□□□ -1.36
ACTN1-216ENST00000556083 A0A0D9SG42 100 aa6.56□□□□□ -1.36
ACTN1-216ENST00000556083 VPS13AQ96RL7 3174 aa6.56□□□□□ -1.36
ACTN1-216ENST00000556083 LCE6AA0A183 80 aa6.55□□□□□ -1.36
ACTN1-216ENST00000556083 OXTP01178 125 aa6.55□□□□□ -1.36
ACTN1-216ENST00000556083 MAP1AP78559 2803 aaPredicted RBP6.55□□□□□ -1.36
ACTN1-216ENST00000556083 EYSQ5T1H1 3165 aa6.54□□□□□ -1.36
ACTN1-216ENST00000556083 CR1P17927 2039 aa6.54□□□□□ -1.36
ACTN1-216ENST00000556083 ASB16-AS1Q495Z4 193 aa6.53□□□□□ -1.36
ACTN1-216ENST00000556083 Q8N9P0 234 aaPredicted RBP6.53□□□□□ -1.36
ACTN1-216ENST00000556083 RPS29P62273 56 aaKnown RBP6.52□□□□□ -1.37
ACTN1-216ENST00000556083 Q5W150 140 aa6.52□□□□□ -1.37
ACTN1-216ENST00000556083 M0R2T5 61 aa6.52□□□□□ -1.37
ACTN1-216ENST00000556083 FRYLO94915 3013 aa6.51□□□□□ -1.37
ACTN1-216ENST00000556083 NBPF19A0A087WUL8 3843 aa6.51□□□□□ -1.37
ACTN1-216ENST00000556083 STAB1Q9NY15 2570 aa6.51□□□□□ -1.37
ACTN1-216ENST00000556083 SPINK7P58062 85 aa6.5□□□□□ -1.37
ACTN1-216ENST00000556083 KRTAP26-1Q6PEX3 210 aa6.5□□□□□ -1.37
ACTN1-216ENST00000556083 R4GN34 69 aa6.48□□□□□ -1.37
ACTN1-216ENST00000556083 SMG1Q96Q15 3661 aaKnown RBP6.47□□□□□ -1.37
ACTN1-216ENST00000556083 FRYQ5TBA9 3013 aa6.45□□□□□ -1.38
ACTN1-216ENST00000556083 COL6A5A8TX70 2615 aa6.45□□□□□ -1.38
ACTN1-216ENST00000556083 FLNCQ14315 2725 aa6.45□□□□□ -1.38
ACTN1-216ENST00000556083 Q6ZR54 194 aa6.44□□□□□ -1.38
ACTN1-216ENST00000556083 REV3LO60673 3130 aa6.44□□□□□ -1.38
ACTN1-216ENST00000556083 RPL37P61927 97 aaKnown RBP6.44□□□□□ -1.38
ACTN1-216ENST00000556083 Q5VSD8 79 aa6.43□□□□□ -1.38
ACTN1-216ENST00000556083 CELSR3Q9NYQ7 3312 aa6.43□□□□□ -1.38
ACTN1-216ENST00000556083 DMXL2Q8TDJ6 3036 aa6.42□□□□□ -1.38
ACTN1-216ENST00000556083 RELNP78509 3460 aa6.41□□□□□ -1.38
ACTN1-216ENST00000556083 DMXL1Q9Y485 3027 aa6.41□□□□□ -1.38
ACTN1-216ENST00000556083 KRTAP4-16G5E9R7 235 aaPredicted RBP6.4□□□□□ -1.39
ACTN1-216ENST00000556083 Q8NDZ9 215 aa6.39□□□□□ -1.39
ACTN1-216ENST00000556083 Q5XG85 94 aa6.38□□□□□ -1.39
ACTN1-216ENST00000556083 KRTAP21-3Q3LHN1 58 aa6.37□□□□□ -1.39
ACTN1-216ENST00000556083 NBEAL1Q6ZS30 2694 aa6.37□□□□□ -1.39
ACTN1-216ENST00000556083 KRTAP1-5Q9BYS1 174 aa6.37□□□□□ -1.39
ACTN1-216ENST00000556083 LAMA1P25391 3075 aa6.37□□□□□ -1.39
ACTN1-216ENST00000556083 Q5VV11 94 aa6.36□□□□□ -1.39
ACTN1-216ENST00000556083 KRTAP10-1P60331 282 aa6.35□□□□□ -1.39
ACTN1-216ENST00000556083 ROMO1P60602 79 aa6.35□□□□□ -1.39
ACTN1-216ENST00000556083 NBEAQ8NFP9 2946 aa6.35□□□□□ -1.39
ACTN1-216ENST00000556083 UBR5O95071 2799 aaPredicted RBP6.35□□□□□ -1.39
ACTN1-216ENST00000556083 TEX15Q9BXT5 2789 aa6.34□□□□□ -1.39
ACTN1-216ENST00000556083 H1FX-AS1Q4G0G2 97 aa6.34□□□□□ -1.39
ACTN1-216ENST00000556083 KRTAP29-1A8MX34 341 aaPredicted RBP6.34□□□□□ -1.4
ACTN1-216ENST00000556083 ITPR2Q14571 2701 aa6.32□□□□□ -1.4
ACTN1-216ENST00000556083 ITPR1Q14643 2758 aa6.31□□□□□ -1.4
ACTN1-216ENST00000556083 KALRNO60229 2985 aa6.31□□□□□ -1.4
ACTN1-216ENST00000556083 COL12A1Q99715 3063 aa6.31□□□□□ -1.4
ACTN1-216ENST00000556083 PLAC4Q8WY50 150 aa6.3□□□□□ -1.4
ACTN1-216ENST00000556083 KRTAP16-1A8MUX0 517 aa6.29□□□□□ -1.4
ACTN1-216ENST00000556083 FLG2Q5D862 2391 aaPredicted RBP6.29□□□□□ -1.4
ACTN1-216ENST00000556083 ATMQ13315 3056 aa6.29□□□□□ -1.4
ACTN1-216ENST00000556083 CFAP47Q6ZTR5 3102 aa6.28□□□□□ -1.4
ACTN1-216ENST00000556083 M0QZ58 72 aa6.28□□□□□ -1.4
ACTN1-216ENST00000556083 LAMA5O15230 3695 aa6.27□□□□□ -1.41
ACTN1-216ENST00000556083 PANO1I0J062 215 aa6.27□□□□□ -1.41
ACTN1-216ENST00000556083 KRTAP10-2P60368 255 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms