RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 ATP5EP2Q5VTU8 51 aa-0.32□□□□□ -2.46
SCFD1-217ENST00000555953 PLXNC1O60486 1568 aa-0.32□□□□□ -2.46
SCFD1-217ENST00000555953 LAMA5O15230 3695 aa-0.33□□□□□ -2.46
SCFD1-217ENST00000555953 SPRR2EP22531 72 aa-0.33□□□□□ -2.46
SCFD1-217ENST00000555953 CRIP1P50238 77 aa-0.33□□□□□ -2.46
SCFD1-217ENST00000555953 HECTD1Q9ULT8 2610 aa-0.33□□□□□ -2.46
SCFD1-217ENST00000555953 APOBP04114 4563 aaKnown RBP-0.33□□□□□ -2.46
SCFD1-217ENST00000555953 KMT2CQ8NEZ4 4911 aaKnown RBP-0.33□□□□□ -2.46
SCFD1-217ENST00000555953 DSTQ03001 7570 aaKnown RBP-0.34□□□□□ -2.46
SCFD1-217ENST00000555953 TIAM2Q8IVF5 1701 aa-0.34□□□□□ -2.46
SCFD1-217ENST00000555953 CFAP74Q9C0B2 1584 aa-0.34□□□□□ -2.46
SCFD1-217ENST00000555953 RRBP1Q9P2E9 1410 aaKnown RBP-0.34□□□□□ -2.46
SCFD1-217ENST00000555953 DSPP15924 2871 aaKnown RBP-0.34□□□□□ -2.46
SCFD1-217ENST00000555953 ABCA8O94911 1581 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 DIP2AQ14689 1571 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 TGP01266 2768 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 H0YGG7 62 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 H3BVH4 76 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 C3orf79P0CE67 100 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 KRTAP19-8Q3LI54 63 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 HILPDAQ9Y5L2 63 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 ABCC1P33527 1531 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 SPTBN4Q9H254 2564 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 NBEAL1Q6ZS30 2694 aa-0.35□□□□□ -2.47
SCFD1-217ENST00000555953 DNAH6Q9C0G6 4158 aa-0.36□□□□□ -2.47
SCFD1-217ENST00000555953 CFAP43Q8NDM7 1665 aa-0.36□□□□□ -2.47
SCFD1-217ENST00000555953 LYNX1G3V0Z9 82 aa-0.36□□□□□ -2.47
SCFD1-217ENST00000555953 IAPPP10997 89 aa-0.36□□□□□ -2.47
SCFD1-217ENST00000555953 ENHOQ6UWT2 76 aa-0.36□□□□□ -2.47
SCFD1-217ENST00000555953 SONP18583 2426 aaKnown RBP-0.36□□□□□ -2.47
SCFD1-217ENST00000555953 ANK3Q12955 4377 aaKnown RBP-0.37□□□□□ -2.47
SCFD1-217ENST00000555953 MAP3K1Q13233 1512 aa-0.37□□□□□ -2.47
SCFD1-217ENST00000555953 PKHD1L1Q86WI1 4243 aa-0.37□□□□□ -2.47
SCFD1-217ENST00000555953 H3BNG1 76 aa-0.37□□□□□ -2.47
SCFD1-217ENST00000555953 VPS13DQ5THJ4 4388 aa-0.37□□□□□ -2.47
SCFD1-217ENST00000555953 VPS13BQ7Z7G8 4022 aa-0.37□□□□□ -2.47
SCFD1-217ENST00000555953 DMXL1Q9Y485 3027 aa-0.37□□□□□ -2.47
SCFD1-217ENST00000555953 LMTK2Q8IWU2 1503 aa-0.38□□□□□ -2.47
SCFD1-217ENST00000555953 IQGAP3Q86VI3 1631 aa-0.38□□□□□ -2.47
SCFD1-217ENST00000555953 PCLOQ9Y6V0 5065 aa-0.38□□□□□ -2.47
SCFD1-217ENST00000555953 STARD9Q9P2P6 4700 aa-0.38□□□□□ -2.47
SCFD1-217ENST00000555953 CCDC88BA6NC98 1476 aa-0.38□□□□□ -2.47
SCFD1-217ENST00000555953 LRRIQ1Q96JM4 1722 aa-0.38□□□□□ -2.47
SCFD1-217ENST00000555953 ANKARQ7Z5J8 1434 aa-0.38□□□□□ -2.47
SCFD1-217ENST00000555953 KCNQ1DNQ9H478 68 aa-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 TJP1Q07157 1748 aa-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 DDX60LQ5H9U9 1706 aaKnown RBP-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 DEPDC5O75140 1603 aa-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 HERC1Q15751 4861 aa-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 NF1P21359 2839 aa-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 NBPF19A0A087WUL8 3843 aa-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 PDE4DIPQ5VU43 2346 aa-0.39□□□□□ -2.47
SCFD1-217ENST00000555953 CDC42BPGQ6DT37 1551 aa-0.4□□□□□ -2.47
SCFD1-217ENST00000555953 NBASA2RRP1 2371 aa-0.4□□□□□ -2.47
SCFD1-217ENST00000555953 DEFB131BA0A096LNP1 70 aa-0.4□□□□□ -2.47
SCFD1-217ENST00000555953 SPRR2FQ96RM1 72 aa-0.4□□□□□ -2.47
SCFD1-217ENST00000555953 CREBBPQ92793 2442 aa-0.4□□□□□ -2.47
SCFD1-217ENST00000555953 STAB2Q8WWQ8 2551 aa-0.41□□□□□ -2.47
SCFD1-217ENST00000555953 MYO5CQ9NQX4 1742 aa-0.41□□□□□ -2.47
SCFD1-217ENST00000555953 RNF17Q9BXT8 1623 aaKnown RBP-0.41□□□□□ -2.47
SCFD1-217ENST00000555953 PRLHP81277 87 aa-0.41□□□□□ -2.48
SCFD1-217ENST00000555953 NCBP2-AS2Q69YL0 99 aa-0.41□□□□□ -2.48
SCFD1-217ENST00000555953 DEFB106AQ8N104 65 aa-0.41□□□□□ -2.48
SCFD1-217ENST00000555953 S4R3F8 94 aa-0.41□□□□□ -2.48
SCFD1-217ENST00000555953 ANKRD50Q9ULJ7 1429 aa-0.41□□□□□ -2.48
SCFD1-217ENST00000555953 HTTP42858 3142 aa-0.41□□□□□ -2.48
SCFD1-217ENST00000555953 MT1AP04731 61 aa-0.42□□□□□ -2.48
SCFD1-217ENST00000555953 NRAPQ86VF7 1730 aa-0.42□□□□□ -2.48
SCFD1-217ENST00000555953 PARP4Q9UKK3 1724 aaKnown RBP-0.42□□□□□ -2.48
SCFD1-217ENST00000555953 AKAP9Q99996 3911 aa-0.43□□□□□ -2.48
SCFD1-217ENST00000555953 UGGT2Q9NYU1 1516 aa-0.43□□□□□ -2.48
SCFD1-217ENST00000555953 USH2AO75445 5202 aa-0.43□□□□□ -2.48
SCFD1-217ENST00000555953 ZZEF1O43149 2961 aa-0.43□□□□□ -2.48
SCFD1-217ENST00000555953 KRTAP20-2Q3LI61 65 aa-0.43□□□□□ -2.48
SCFD1-217ENST00000555953 DNAH11Q96DT5 4516 aa-0.43□□□□□ -2.48
SCFD1-217ENST00000555953 KALRNO60229 2985 aa-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 GCN1Q92616 2671 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 FASNP49327 2511 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 RPS27P42677 84 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 RPS27LQ71UM5 84 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 UBL5Q9BZL1 73 aa-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 SACSQ9NZJ4 4579 aa-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 RALGAPBQ86X10 1494 aa-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 ZC3H13Q5T200 1668 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 ASXL1Q8IXJ9 1541 aa-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 MUC17Q685J3 4493 aa-0.44□□□□□ -2.48
SCFD1-217ENST00000555953 MXRA5Q9NR99 2828 aa-0.45□□□□□ -2.48
SCFD1-217ENST00000555953 HFM1A2PYH4 1435 aa-0.45□□□□□ -2.48
SCFD1-217ENST00000555953 DNAH3Q8TD57 4116 aa-0.45□□□□□ -2.48
SCFD1-217ENST00000555953 UBR4Q5T4S7 5183 aa-0.45□□□□□ -2.48
SCFD1-217ENST00000555953 ETDCA0A1B0GVM5 59 aa-0.45□□□□□ -2.48
SCFD1-217ENST00000555953 ITSN1Q15811 1721 aa-0.45□□□□□ -2.48
SCFD1-217ENST00000555953 TACC2O95359 2948 aa-0.45□□□□□ -2.48
SCFD1-217ENST00000555953 FAT1Q14517 4588 aa-0.45□□□□□ -2.48
SCFD1-217ENST00000555953 ABCA9Q8IUA7 1624 aa-0.46□□□□□ -2.48
SCFD1-217ENST00000555953 ATXN8Q156A1 80 aa-0.46□□□□□ -2.48
SCFD1-217ENST00000555953 SMCO4Q9NRQ5 59 aa-0.46□□□□□ -2.48
SCFD1-217ENST00000555953 MADDQ8WXG6 1647 aa-0.46□□□□□ -2.48
SCFD1-217ENST00000555953 ITSN2Q9NZM3 1697 aa-0.46□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms