RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 BAHCC1Q9P281 2608 aa10.99□□□□□ -0.65
SYNE3-202ENST00000553340 RPL37AP61513 92 aaKnown RBP10.99□□□□□ -0.65
SYNE3-202ENST00000553340 DNAH1Q9P2D7 4330 aa10.98□□□□□ -0.65
SYNE3-202ENST00000553340 TRAV22A0A0B4J277 110 aa10.98□□□□□ -0.65
SYNE3-202ENST00000553340 KRTAP29-1A8MX34 341 aaPredicted RBP10.98□□□□□ -0.65
SYNE3-202ENST00000553340 LINC00208Q96KT6 92 aa10.98□□□□□ -0.65
SYNE3-202ENST00000553340 CNBPP62633 177 aaKnown RBP10.96□□□□□ -0.65
SYNE3-202ENST00000553340 KRTAP24-1Q3LI83 254 aa10.96□□□□□ -0.65
SYNE3-202ENST00000553340 C1orf195Q5TG92 126 aa10.96□□□□□ -0.65
SYNE3-202ENST00000553340 CASC2Q6XLA1 102 aa10.95□□□□□ -0.66
SYNE3-202ENST00000553340 PRR15Q8IV56 129 aa10.93□□□□□ -0.66
SYNE3-202ENST00000553340 H0Y9P7 68 aa10.92□□□□□ -0.66
SYNE3-202ENST00000553340 H3BPC8 53 aa10.92□□□□□ -0.66
SYNE3-202ENST00000553340 PSPHP1O15172 72 aa10.92□□□□□ -0.66
SYNE3-202ENST00000553340 B9D2Q9BPU9 175 aa10.92□□□□□ -0.66
SYNE3-202ENST00000553340 MAST4O15021 2626 aa10.92□□□□□ -0.66
SYNE3-202ENST00000553340 SPRR1BP22528 89 aa10.91□□□□□ -0.66
SYNE3-202ENST00000553340 A8MWP4 228 aa10.91□□□□□ -0.66
SYNE3-202ENST00000553340 PRB2P02812 416 aaPredicted RBP10.91□□□□□ -0.66
SYNE3-202ENST00000553340 H0Y9J4 135 aa10.9□□□□□ -0.66
SYNE3-202ENST00000553340 KRTAP1-5Q9BYS1 174 aa10.9□□□□□ -0.66
SYNE3-202ENST00000553340 STAB1Q9NY15 2570 aa10.9□□□□□ -0.66
SYNE3-202ENST00000553340 V9GYY9 64 aa10.9□□□□□ -0.66
SYNE3-202ENST00000553340 CMYA5Q8N3K9 4069 aa10.89□□□□□ -0.67
SYNE3-202ENST00000553340 PHF5AQ7RTV0 110 aaKnown RBP10.89□□□□□ -0.67
SYNE3-202ENST00000553340 SPANXA2-OT1Q8N9U9 137 aa10.89□□□□□ -0.67
SYNE3-202ENST00000553340 LINC00472Q9H8W2 130 aa10.89□□□□□ -0.67
SYNE3-202ENST00000553340 KRTAP11-1Q8IUC1 163 aa10.88□□□□□ -0.67
SYNE3-202ENST00000553340 NOTCH1P46531 2555 aa10.87□□□□□ -0.67
SYNE3-202ENST00000553340 DNAH3Q8TD57 4116 aa10.87□□□□□ -0.67
SYNE3-202ENST00000553340 CHTF8P0CG12 524 aa10.86□□□□□ -0.67
SYNE3-202ENST00000553340 C14orf177Q52M58 125 aa10.85□□□□□ -0.67
SYNE3-202ENST00000553340 A8MUN3 132 aa10.82□□□□□ -0.68
SYNE3-202ENST00000553340 K7EIL1 84 aa10.81□□□□□ -0.68
SYNE3-202ENST00000553340 FBN1P35555 2871 aaKnown RBP10.81□□□□□ -0.68
SYNE3-202ENST00000553340 UBE2DNLQ8IWF7 75 aa10.8□□□□□ -0.68
SYNE3-202ENST00000553340 C9orf163Q8N9P6 203 aa10.8□□□□□ -0.68
SYNE3-202ENST00000553340 MMP24-AS1A0A0U1RRL7 71 aa10.78□□□□□ -0.68
SYNE3-202ENST00000553340 SRRM2Q9UQ35 2752 aaKnown RBP10.77□□□□□ -0.69
SYNE3-202ENST00000553340 NBEAL1Q6ZS30 2694 aa10.77□□□□□ -0.69
SYNE3-202ENST00000553340 DNAH10Q8IVF4 4471 aa10.76□□□□□ -0.69
SYNE3-202ENST00000553340 HUWE1Q7Z6Z7 4374 aaKnown RBP10.76□□□□□ -0.69
SYNE3-202ENST00000553340 Q5VV11 94 aa10.75□□□□□ -0.69
SYNE3-202ENST00000553340 Q8N9P0 234 aaPredicted RBP10.75□□□□□ -0.69
SYNE3-202ENST00000553340 LIMD2Q9BT23 127 aa10.75□□□□□ -0.69
SYNE3-202ENST00000553340 COL6A5A8TX70 2615 aa10.72□□□□□ -0.69
SYNE3-202ENST00000553340 KRTAP13-1Q8IUC0 172 aa10.71□□□□□ -0.69
SYNE3-202ENST00000553340 IGLV7-46A0A075B6I9 117 aa10.71□□□□□ -0.7
SYNE3-202ENST00000553340 PMAIP1Q13794 54 aa10.7□□□□□ -0.7
SYNE3-202ENST00000553340 APLNQ9ULZ1 77 aa10.7□□□□□ -0.7
SYNE3-202ENST00000553340 TP53AIP1Q9HCN2 124 aa10.69□□□□□ -0.7
SYNE3-202ENST00000553340 CHKB-CPT1BH3BT56 60 aa10.68□□□□□ -0.7
SYNE3-202ENST00000553340 COA5Q86WW8 74 aa10.68□□□□□ -0.7
SYNE3-202ENST00000553340 IGLV9-49A0A0B4J1Y8 123 aa10.68□□□□□ -0.7
SYNE3-202ENST00000553340 MOBPQ13875 183 aa10.68□□□□□ -0.7
SYNE3-202ENST00000553340 Q96NJ1 140 aa10.68□□□□□ -0.7
SYNE3-202ENST00000553340 PRR15LQ9BU68 103 aa10.68□□□□□ -0.7
SYNE3-202ENST00000553340 ASB16-AS1Q495Z4 193 aa10.67□□□□□ -0.7
SYNE3-202ENST00000553340 PANO1I0J062 215 aa10.66□□□□□ -0.7
SYNE3-202ENST00000553340 LYSTQ99698 3801 aa10.66□□□□□ -0.7
SYNE3-202ENST00000553340 DNAH9Q9NYC9 4486 aa10.65□□□□□ -0.7
SYNE3-202ENST00000553340 PCOTHQ58A44 107 aa10.65□□□□□ -0.71
SYNE3-202ENST00000553340 C8orf17Q9NRJ1 99 aa10.63□□□□□ -0.71
SYNE3-202ENST00000553340 A8MU10 97 aa10.62□□□□□ -0.71
SYNE3-202ENST00000553340 STAB2Q8WWQ8 2551 aa10.61□□□□□ -0.71
SYNE3-202ENST00000553340 Q6ZR54 194 aa10.61□□□□□ -0.71
SYNE3-202ENST00000553340 CD164Q04900 197 aa10.6□□□□□ -0.71
SYNE3-202ENST00000553340 SEC61GP60059 68 aa10.6□□□□□ -0.71
SYNE3-202ENST00000553340 NBDYA0A0U1RRE5 68 aa10.59□□□□□ -0.71
SYNE3-202ENST00000553340 LOC101927531A0A1B0GV80 90 aa10.59□□□□□ -0.71
SYNE3-202ENST00000553340 LINC00483Q53H64 154 aa10.59□□□□□ -0.71
SYNE3-202ENST00000553340 Q75L30 129 aa10.59□□□□□ -0.71
SYNE3-202ENST00000553340 TENM2Q9NT68 2774 aa10.59□□□□□ -0.71
SYNE3-202ENST00000553340 NDUFS5O43920 106 aa10.58□□□□□ -0.72
SYNE3-202ENST00000553340 IGHV6-1A0A0B4J1U7 121 aa10.58□□□□□ -0.72
SYNE3-202ENST00000553340 A0A1B0GVX0 72 aa10.58□□□□□ -0.72
SYNE3-202ENST00000553340 SPACA4Q8TDM5 124 aa10.57□□□□□ -0.72
SYNE3-202ENST00000553340 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.57□□□□□ -0.72
SYNE3-202ENST00000553340 CDK2AP2O75956 126 aa10.56□□□□□ -0.72
SYNE3-202ENST00000553340 Q6ZRN7 208 aaPredicted RBP10.56□□□□□ -0.72
SYNE3-202ENST00000553340 ZNF706Q9Y5V0 76 aaPredicted RBP10.56□□□□□ -0.72
SYNE3-202ENST00000553340 A6NED7 52 aa10.54□□□□□ -0.72
SYNE3-202ENST00000553340 MRPL34Q9BQ48 92 aaKnown RBP10.54□□□□□ -0.72
SYNE3-202ENST00000553340 WWC2-AS2Q96NR7 200 aa10.53□□□□□ -0.72
SYNE3-202ENST00000553340 CSMD3Q7Z407 3707 aa10.53□□□□□ -0.72
SYNE3-202ENST00000553340 COL7A1Q02388 2944 aa10.52□□□□□ -0.73
SYNE3-202ENST00000553340 LCA10Q71F78 164 aa10.51□□□□□ -0.73
SYNE3-202ENST00000553340 MDFIQ99750 246 aa10.51□□□□□ -0.73
SYNE3-202ENST00000553340 MGAM2Q2M2H8 2515 aa10.5□□□□□ -0.73
SYNE3-202ENST00000553340 LINC01558Q9Y6Z2 57 aa10.5□□□□□ -0.73
SYNE3-202ENST00000553340 SPAG11AQ6PDA7 123 aa10.49□□□□□ -0.73
SYNE3-202ENST00000553340 SPTSSBQ8NFR3 76 aa10.49□□□□□ -0.73
SYNE3-202ENST00000553340 ATP11AUNQ6ZP68 121 aa10.48□□□□□ -0.73
SYNE3-202ENST00000553340 HRES1P13985 223 aa10.46□□□□□ -0.73
SYNE3-202ENST00000553340 PSORS1C2Q9UIG4 136 aa10.46□□□□□ -0.73
SYNE3-202ENST00000553340 IGLV5-52A0A0A0MRZ9 124 aa10.45□□□□□ -0.74
SYNE3-202ENST00000553340 PLAC8Q9NZF1 115 aa10.45□□□□□ -0.74
SYNE3-202ENST00000553340 DNAH7Q8WXX0 4024 aa10.45□□□□□ -0.74
SYNE3-202ENST00000553340 A0A087X002 238 aa10.45□□□□□ -0.74
SYNE3-202ENST00000553340 NOTCH2NLQ7Z3S9 236 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms