RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 XP32Q5T750 250 aa10.63□□□□□ -0.71
PTCH1-227ENST00000553256 LIMD2Q9BT23 127 aa10.63□□□□□ -0.71
PTCH1-227ENST00000553256 BVES-AS1Q5T3Y7 98 aa10.61□□□□□ -0.71
PTCH1-227ENST00000553256 H7C2G1 150 aa10.6□□□□□ -0.71
PTCH1-227ENST00000553256 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.6□□□□□ -0.71
PTCH1-227ENST00000553256 CEND1Q8N111 149 aa10.6□□□□□ -0.71
PTCH1-227ENST00000553256 KRTAP4-1Q9BYQ7 146 aa10.6□□□□□ -0.71
PTCH1-227ENST00000553256 FXYD2P54710 66 aa10.58□□□□□ -0.72
PTCH1-227ENST00000553256 LCE2AQ5TA79 106 aaPredicted RBP10.57□□□□□ -0.72
PTCH1-227ENST00000553256 C1orf195Q5TG92 126 aa10.57□□□□□ -0.72
PTCH1-227ENST00000553256 FAM218AQ96MZ4 157 aa10.57□□□□□ -0.72
PTCH1-227ENST00000553256 LCE2DQ5TA82 110 aaPredicted RBP10.56□□□□□ -0.72
PTCH1-227ENST00000553256 PPDPFLQ8WWR9 84 aa10.55□□□□□ -0.72
PTCH1-227ENST00000553256 RAB37Q96AX2 223 aa10.55□□□□□ -0.72
PTCH1-227ENST00000553256 OCIAD2Q56VL3 154 aa10.53□□□□□ -0.72
PTCH1-227ENST00000553256 IGFL1Q6UW32 110 aa10.53□□□□□ -0.72
PTCH1-227ENST00000553256 H0YGX0 51 aa10.52□□□□□ -0.73
PTCH1-227ENST00000553256 TMA7Q9Y2S6 64 aaKnown RBP10.52□□□□□ -0.73
PTCH1-227ENST00000553256 Q6JHZ5 121 aa10.51□□□□□ -0.73
PTCH1-227ENST00000553256 PRO1854Q9UHT4 67 aa10.51□□□□□ -0.73
PTCH1-227ENST00000553256 CLEC2BQ92478 149 aa10.5□□□□□ -0.73
PTCH1-227ENST00000553256 A0A0U1RQV1 116 aa10.49□□□□□ -0.73
PTCH1-227ENST00000553256 F8WEM9 126 aa10.49□□□□□ -0.73
PTCH1-227ENST00000553256 SEC61BP60468 96 aaKnown RBP10.49□□□□□ -0.73
PTCH1-227ENST00000553256 HSD52Q0P140 79 aa10.48□□□□□ -0.73
PTCH1-227ENST00000553256 TRBV7-7A0A0K0K1E9 115 aa10.47□□□□□ -0.73
PTCH1-227ENST00000553256 TMEM238LA0A1B0GVL6 79 aa10.47□□□□□ -0.73
PTCH1-227ENST00000553256 A6NJY4 79 aa10.47□□□□□ -0.73
PTCH1-227ENST00000553256 A0A1B0GX51 115 aa10.46□□□□□ -0.73
PTCH1-227ENST00000553256 TRIAP1O43715 76 aa10.46□□□□□ -0.73
PTCH1-227ENST00000553256 C9orf92A6NGG3 77 aa10.44□□□□□ -0.74
PTCH1-227ENST00000553256 H3BUT2 72 aa10.44□□□□□ -0.74
PTCH1-227ENST00000553256 UQCR10Q9UDW1 63 aa10.43□□□□□ -0.74
PTCH1-227ENST00000553256 K7ERJ3 54 aa10.42□□□□□ -0.74
PTCH1-227ENST00000553256 TCL1BO95988 128 aa10.42□□□□□ -0.74
PTCH1-227ENST00000553256 SNHG12Q9BXW3 62 aa10.42□□□□□ -0.74
PTCH1-227ENST00000553256 Q6Q795 121 aa10.41□□□□□ -0.74
PTCH1-227ENST00000553256 NDUFV3P56181 108 aaKnown RBP10.39□□□□□ -0.75
PTCH1-227ENST00000553256 KRTAP19-2Q3LHN2 52 aa10.37□□□□□ -0.75
PTCH1-227ENST00000553256 PCOTHQ58A44 107 aa10.35□□□□□ -0.75
PTCH1-227ENST00000553256 SNCGO76070 127 aa10.34□□□□□ -0.75
PTCH1-227ENST00000553256 LCE2CQ5TA81 110 aa10.34□□□□□ -0.75
PTCH1-227ENST00000553256 RPL37P61927 97 aaKnown RBP10.32□□□□□ -0.76
PTCH1-227ENST00000553256 TEN1Q86WV5 123 aa10.31□□□□□ -0.76
PTCH1-227ENST00000553256 H3BMG7 143 aa10.3□□□□□ -0.76
PTCH1-227ENST00000553256 A0A1W2PNM2 257 aa10.29□□□□□ -0.76
PTCH1-227ENST00000553256 GHRHP01286 108 aa10.28□□□□□ -0.76
PTCH1-227ENST00000553256 FABP2P12104 132 aa10.28□□□□□ -0.76
PTCH1-227ENST00000553256 Q96NJ1 140 aa10.28□□□□□ -0.76
PTCH1-227ENST00000553256 PSMB2P49721 201 aa10.26□□□□□ -0.77
PTCH1-227ENST00000553256 LST1O00453 97 aa10.25□□□□□ -0.77
PTCH1-227ENST00000553256 ORMDL1Q9P0S3 153 aa10.25□□□□□ -0.77
PTCH1-227ENST00000553256 A0A087WSZ3 146 aa10.24□□□□□ -0.77
PTCH1-227ENST00000553256 H3BQ85 93 aa10.23□□□□□ -0.77
PTCH1-227ENST00000553256 TRACP01848 142 aa10.23□□□□□ -0.77
PTCH1-227ENST00000553256 COX6CP09669 75 aa10.23□□□□□ -0.77
PTCH1-227ENST00000553256 SS18L2Q9UHA2 77 aa10.23□□□□□ -0.77
PTCH1-227ENST00000553256 TMEM256-PLSCR3K7ERE1 68 aa10.21□□□□□ -0.77
PTCH1-227ENST00000553256 DNAL4O96015 105 aa10.21□□□□□ -0.77
PTCH1-227ENST00000553256 SMIM6P0DI80 62 aa10.21□□□□□ -0.77
PTCH1-227ENST00000553256 UBE2V1Q13404 147 aa10.2□□□□□ -0.78
PTCH1-227ENST00000553256 OBSCN-AS1Q96MR7 158 aa10.19□□□□□ -0.78
PTCH1-227ENST00000553256 TRBV7-4A0A0J9YYF1 115 aa10.18□□□□□ -0.78
PTCH1-227ENST00000553256 Q75L30 129 aa10.18□□□□□ -0.78
PTCH1-227ENST00000553256 FLGP20930 4061 aaPredicted RBP10.16□□□□□ -0.78
PTCH1-227ENST00000553256 ANKRD29Q8N6D5 301 aa10.16□□□□□ -0.78
PTCH1-227ENST00000553256 C20orf166-AS1Q96NR2 134 aa10.13□□□□□ -0.79
PTCH1-227ENST00000553256 KRTAP9-2Q9BYQ4 174 aa10.13□□□□□ -0.79
PTCH1-227ENST00000553256 A0A1B0GV72 72 aa10.12□□□□□ -0.79
PTCH1-227ENST00000553256 LOC105371267A0A1B0GV96 52 aa10.12□□□□□ -0.79
PTCH1-227ENST00000553256 SCGB1C2P0DMR2 95 aa10.12□□□□□ -0.79
PTCH1-227ENST00000553256 MT1HP80294 61 aa10.12□□□□□ -0.79
PTCH1-227ENST00000553256 M0R143 59 aa10.11□□□□□ -0.79
PTCH1-227ENST00000553256 LINC00472Q9H8W2 130 aa10.11□□□□□ -0.79
PTCH1-227ENST00000553256 A8MUU9 505 aa10.1□□□□□ -0.79
PTCH1-227ENST00000553256 CCKP06307 115 aa10.08□□□□□ -0.8
PTCH1-227ENST00000553256 NAA38Q9BRA0 125 aaKnown RBP10.08□□□□□ -0.8
PTCH1-227ENST00000553256 KRTAP16-1A8MUX0 517 aa10.06□□□□□ -0.8
PTCH1-227ENST00000553256 BAALC-AS2P0C853 105 aa10.06□□□□□ -0.8
PTCH1-227ENST00000553256 RBM3P98179 157 aaKnown RBP10.05□□□□□ -0.8
PTCH1-227ENST00000553256 DSCR10P59022 87 aa10.03□□□□□ -0.8
PTCH1-227ENST00000553256 NOTCH2NLQ7Z3S9 236 aa10.02□□□□□ -0.81
PTCH1-227ENST00000553256 IGKV4-1P06312 121 aa10.01□□□□□ -0.81
PTCH1-227ENST00000553256 ATXN8Q156A1 80 aa10.01□□□□□ -0.81
PTCH1-227ENST00000553256 ATP11AUNQ6ZP68 121 aa10.01□□□□□ -0.81
PTCH1-227ENST00000553256 KRTAP3-3Q9BYR6 98 aa10.01□□□□□ -0.81
PTCH1-227ENST00000553256 KRTAP3-2Q9BYR7 98 aa10.01□□□□□ -0.81
PTCH1-227ENST00000553256 TSTD3H0UI37 97 aa9.99□□□□□ -0.81
PTCH1-227ENST00000553256 DEFB116Q30KQ4 102 aa9.99□□□□□ -0.81
PTCH1-227ENST00000553256 SIGMAR1Q99720 223 aa9.99□□□□□ -0.81
PTCH1-227ENST00000553256 DSCR8Q96T75 97 aa9.98□□□□□ -0.81
PTCH1-227ENST00000553256 LINC00313P59037 77 aa9.96□□□□□ -0.82
PTCH1-227ENST00000553256 Q6ZQT0 140 aa9.95□□□□□ -0.82
PTCH1-227ENST00000553256 LOC110117498A0A087WWA1 95 aa9.94□□□□□ -0.82
PTCH1-227ENST00000553256 C9JAW5 83 aa9.94□□□□□ -0.82
PTCH1-227ENST00000553256 LORP23490 312 aaPredicted RBP9.94□□□□□ -0.82
PTCH1-227ENST00000553256 VPS25Q9BRG1 176 aa9.92□□□□□ -0.82
PTCH1-227ENST00000553256 TRBV20-1A0A075B6N2 111 aa9.91□□□□□ -0.82
PTCH1-227ENST00000553256 JMJD7-PLA2G4BH0Y9G9 81 aa9.91□□□□□ -0.82
PTCH1-227ENST00000553256 TAX1BP3O14907 124 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms