RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 ALMS1Q8TCU4 4167 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 BRWD1Q9NSI6 2320 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 LELP1Q5T871 98 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 MINOS1Q5TGZ0 78 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 COL6A5A8TX70 2615 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 NBEAL2Q6ZNJ1 2754 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 RYR3Q15413 4870 aa1.03□□□□□ -2.24
LIMA1-207ENST00000551486 ASCC3Q8N3C0 2202 aaKnown RBP1.03□□□□□ -2.25
LIMA1-207ENST00000551486 JMJD1CQ15652 2540 aa1.03□□□□□ -2.25
LIMA1-207ENST00000551486 HYDINQ4G0P3 5121 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 LAMA3Q16787 3333 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 USP34Q70CQ2 3546 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 IGKV2-24A0A0C4DH68 120 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 A0A0G2JMZ2 1700 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 LRRC37A2A6NM11 1700 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 LYNX1G3V0Z9 82 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 H0YAA0 97 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 M0QY20 66 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 TENM4Q6N022 2769 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 Q6ZSA8 131 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 COL27A1Q8IZC6 1860 aaPredicted RBP1.02□□□□□ -2.25
LIMA1-207ENST00000551486 MRPL34Q9BQ48 92 aaKnown RBP1.02□□□□□ -2.25
LIMA1-207ENST00000551486 TP53AIP1Q9HCN2 124 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 C6orf48Q9UBA6 75 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 KAAG1Q9UBP8 84 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 CRCT1Q9UGL9 99 aa1.02□□□□□ -2.25
LIMA1-207ENST00000551486 GPR98Q8WXG9 6306 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 DNAH12Q6ZR08 3092 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 BOD1L1Q8NFC6 3051 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 A8MTW9 85 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 KRTAP13-2Q52LG2 175 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 PRR9Q5T870 116 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 UBE2DNLQ8IWF7 75 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 CACNA1BQ00975 2339 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 CACNA1EQ15878 2313 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 PLCE1Q9P212 2302 aa1.01□□□□□ -2.25
LIMA1-207ENST00000551486 SSC5DA1L4H1 1573 aa1□□□□□ -2.25
LIMA1-207ENST00000551486 CFAP46Q8IYW2 2715 aa1□□□□□ -2.25
LIMA1-207ENST00000551486 IGLV5-48A0A075B6I7 105 aa1□□□□□ -2.25
LIMA1-207ENST00000551486 DEFB108AA8MXU0 73 aa1□□□□□ -2.25
LIMA1-207ENST00000551486 C10orf99Q6UWK7 81 aa1□□□□□ -2.25
LIMA1-207ENST00000551486 C5orf42Q9H799 3197 aa1□□□□□ -2.25
LIMA1-207ENST00000551486 MYO9AB2RTY4 2548 aa1□□□□□ -2.25
LIMA1-207ENST00000551486 UBR5O95071 2799 aaPredicted RBP1□□□□□ -2.25
LIMA1-207ENST00000551486 NOTCH1P46531 2555 aa1□□□□□ -2.25
LIMA1-207ENST00000551486 EPPK1P58107 5090 aaKnown RBP0.99□□□□□ -2.25
LIMA1-207ENST00000551486 COL6A6A6NMZ7 2263 aa0.99□□□□□ -2.25
LIMA1-207ENST00000551486 DEFB130BP0DP73 79 aa0.99□□□□□ -2.25
LIMA1-207ENST00000551486 DEFB130AP0DP74 79 aa0.99□□□□□ -2.25
LIMA1-207ENST00000551486 RPL37P61927 97 aaKnown RBP0.99□□□□□ -2.25
LIMA1-207ENST00000551486 RPL39P5Q59GN2 51 aa0.99□□□□□ -2.25
LIMA1-207ENST00000551486 DEFB105AQ8NG35 78 aa0.99□□□□□ -2.25
LIMA1-207ENST00000551486 KRTAP4-1Q9BYQ7 146 aa0.99□□□□□ -2.25
LIMA1-207ENST00000551486 TOMM7Q9P0U1 55 aa0.99□□□□□ -2.25
LIMA1-207ENST00000551486 PTPRQQ9UMZ3 2332 aa0.99□□□□□ -2.25
LIMA1-207ENST00000551486 KMT2CQ8NEZ4 4911 aaKnown RBP0.98□□□□□ -2.25
LIMA1-207ENST00000551486 COL4A2P08572 1712 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 KNL1Q8NG31 2342 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 ICE1Q9Y2F5 2266 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 WNK2Q9Y3S1 2297 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 LYNX1P0DP58 116 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 WT1-ASQ06250 92 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 TENM1Q9UKZ4 2725 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 CNOT1A5YKK6 2376 aaKnown RBP0.98□□□□□ -2.25
LIMA1-207ENST00000551486 NAV3Q8IVL0 2385 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 FBN2P35556 2912 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 IGSF10Q6WRI0 2623 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 BIRC6Q9NR09 4857 aa0.98□□□□□ -2.25
LIMA1-207ENST00000551486 CFAP54Q96N23 3096 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 SPINK13Q1W4C9 94 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 KRTAP13-4Q3LI77 160 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 H1FX-AS1Q4G0G2 97 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 COX6B2Q6YFQ2 88 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 TMEM167AQ8TBQ9 72 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 LRRK2Q5S007 2527 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 ANKHD1Q8IWZ3 2542 aaKnown RBP0.97□□□□□ -2.25
LIMA1-207ENST00000551486 CCDC168Q8NDH2 2452 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 EP400Q96L91 3159 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 HTTP42858 3142 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 PDZD2O15018 2839 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 PKD1L1Q8TDX9 2849 aa0.97□□□□□ -2.25
LIMA1-207ENST00000551486 CDH23Q9H251 3354 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 FBN1P35555 2871 aaKnown RBP0.96□□□□□ -2.26
LIMA1-207ENST00000551486 TEX15Q9BXT5 2789 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 MMP24-AS1A0A0U1RRL7 71 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 USMG5Q96IX5 58 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 APLNQ9ULZ1 77 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 OTOGLQ3ZCN5 2332 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 NCOR2Q9Y618 2525 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 DOPEY2Q9Y3R5 2298 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 TTC28Q96AY4 2481 aa0.96□□□□□ -2.26
LIMA1-207ENST00000551486 DCHS1Q96JQ0 3298 aa0.95□□□□□ -2.26
LIMA1-207ENST00000551486 XIRP2A4UGR9 3374 aa0.95□□□□□ -2.26
LIMA1-207ENST00000551486 TNRC6CQ9HCJ0 1690 aaKnown RBP0.95□□□□□ -2.26
LIMA1-207ENST00000551486 SMG1Q96Q15 3661 aaKnown RBP0.95□□□□□ -2.26
LIMA1-207ENST00000551486 K7EIM0 57 aa0.95□□□□□ -2.26
LIMA1-207ENST00000551486 STATHP02808 62 aa0.95□□□□□ -2.26
LIMA1-207ENST00000551486 CLPSL2Q6UWE3 100 aa0.95□□□□□ -2.26
LIMA1-207ENST00000551486 DEFB123Q8N688 67 aa0.95□□□□□ -2.26
LIMA1-207ENST00000551486 HIVEP2P31629 2446 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms