RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 FAM104AQ969W3 186 aa7□□□□□ -1.29
CLIP1-209ENST00000537178 FLNBO75369 2602 aaKnown RBP7□□□□□ -1.29
CLIP1-209ENST00000537178 IGLV5-37A0A075B6J1 123 aa6.99□□□□□ -1.29
CLIP1-209ENST00000537178 CDC42SE1Q9NRR8 79 aa6.99□□□□□ -1.29
CLIP1-209ENST00000537178 ITPR1Q14643 2758 aa6.98□□□□□ -1.29
CLIP1-209ENST00000537178 KTN1-AS1Q86SY8 53 aa6.98□□□□□ -1.29
CLIP1-209ENST00000537178 H7BZZ5 65 aa6.98□□□□□ -1.29
CLIP1-209ENST00000537178 EPG5Q9HCE0 2579 aa6.98□□□□□ -1.29
CLIP1-209ENST00000537178 RBM12B-AS1Q9P1G2 102 aa6.97□□□□□ -1.29
CLIP1-209ENST00000537178 ATRQ13535 2644 aa6.97□□□□□ -1.29
CLIP1-209ENST00000537178 CSNK1G2-AS1Q8NCQ2 148 aa6.97□□□□□ -1.29
CLIP1-209ENST00000537178 C15orf56Q8N910 161 aa6.97□□□□□ -1.29
CLIP1-209ENST00000537178 C9orf163Q8N9P6 203 aa6.96□□□□□ -1.29
CLIP1-209ENST00000537178 PLA2G2DQ9UNK4 145 aa6.96□□□□□ -1.29
CLIP1-209ENST00000537178 C9orf92A6NGG3 77 aa6.96□□□□□ -1.29
CLIP1-209ENST00000537178 ZNF469Q96JG9 3925 aaPredicted RBP6.96□□□□□ -1.3
CLIP1-209ENST00000537178 TLX1NBP0CAT3 122 aa6.96□□□□□ -1.3
CLIP1-209ENST00000537178 CUBNO60494 3623 aa6.96□□□□□ -1.3
CLIP1-209ENST00000537178 MAST4O15021 2626 aa6.96□□□□□ -1.3
CLIP1-209ENST00000537178 SPANXA2-OT1Q8N9U9 137 aa6.95□□□□□ -1.3
CLIP1-209ENST00000537178 LUZP6Q538Z0 58 aa6.95□□□□□ -1.3
CLIP1-209ENST00000537178 A0A087WTM6 91 aa6.93□□□□□ -1.3
CLIP1-209ENST00000537178 LINC01554Q52M75 96 aa6.93□□□□□ -1.3
CLIP1-209ENST00000537178 MXRA5Q9NR99 2828 aa6.93□□□□□ -1.3
CLIP1-209ENST00000537178 FLG2Q5D862 2391 aaPredicted RBP6.93□□□□□ -1.3
CLIP1-209ENST00000537178 IGLV7-43P04211 117 aa6.91□□□□□ -1.3
CLIP1-209ENST00000537178 IGLV5-48A0A075B6I7 105 aa6.91□□□□□ -1.3
CLIP1-209ENST00000537178 A0A0D9SG42 100 aa6.91□□□□□ -1.3
CLIP1-209ENST00000537178 K7EIL1 84 aa6.91□□□□□ -1.3
CLIP1-209ENST00000537178 A0A0G2JQZ4 141 aa6.9□□□□□ -1.3
CLIP1-209ENST00000537178 A0A1W2PNN7 141 aa6.9□□□□□ -1.3
CLIP1-209ENST00000537178 C19orf73Q9NVV2 129 aa6.9□□□□□ -1.3
CLIP1-209ENST00000537178 SPRR4Q96PI1 79 aa6.9□□□□□ -1.31
CLIP1-209ENST00000537178 A0A1W2PNM2 257 aa6.89□□□□□ -1.31
CLIP1-209ENST00000537178 LINC00612Q8N6U2 182 aa6.89□□□□□ -1.31
CLIP1-209ENST00000537178 CYSTM1Q9H1C7 97 aa6.88□□□□□ -1.31
CLIP1-209ENST00000537178 Q5XG85 94 aa6.88□□□□□ -1.31
CLIP1-209ENST00000537178 ANAPC11Q9NYG5 84 aa6.88□□□□□ -1.31
CLIP1-209ENST00000537178 PSORS1C2Q9UIG4 136 aa6.88□□□□□ -1.31
CLIP1-209ENST00000537178 Q8N1X5 172 aa6.87□□□□□ -1.31
CLIP1-209ENST00000537178 SMR3BP02814 79 aaPredicted RBP6.87□□□□□ -1.31
CLIP1-209ENST00000537178 ANK3Q12955 4377 aaKnown RBP6.86□□□□□ -1.31
CLIP1-209ENST00000537178 Q1T7F1 81 aa6.85□□□□□ -1.31
CLIP1-209ENST00000537178 CNBPP62633 177 aaKnown RBP6.85□□□□□ -1.31
CLIP1-209ENST00000537178 GIG44P09565 113 aaPredicted RBP6.84□□□□□ -1.31
CLIP1-209ENST00000537178 FBN2P35556 2912 aa6.84□□□□□ -1.31
CLIP1-209ENST00000537178 KRTAP10-11P60412 298 aa6.84□□□□□ -1.31
CLIP1-209ENST00000537178 HECTD1Q9ULT8 2610 aa6.84□□□□□ -1.31
CLIP1-209ENST00000537178 ZANQ9Y493 2812 aa6.84□□□□□ -1.32
CLIP1-209ENST00000537178 NIPBLQ6KC79 2804 aaeCLIP6.83□□□□□ -1.321e-6■□□□□ 9
CLIP1-209ENST00000537178 STAB1Q9NY15 2570 aa6.82□□□□□ -1.32
CLIP1-209ENST00000537178 MAP1AP78559 2803 aaPredicted RBP6.82□□□□□ -1.32
CLIP1-209ENST00000537178 PRR26Q8N8Z3 221 aa6.82□□□□□ -1.32
CLIP1-209ENST00000537178 UTP20O75691 2785 aaKnown RBP6.81□□□□□ -1.32
CLIP1-209ENST00000537178 CAMK2N1Q7Z7J9 78 aa6.8□□□□□ -1.32
CLIP1-209ENST00000537178 OXTP01178 125 aa6.8□□□□□ -1.32
CLIP1-209ENST00000537178 LINC00483Q53H64 154 aa6.78□□□□□ -1.32
CLIP1-209ENST00000537178 Q6ZSA8 131 aa6.77□□□□□ -1.33
CLIP1-209ENST00000537178 OCR1Q9BZK8 76 aa6.77□□□□□ -1.33
CLIP1-209ENST00000537178 CFAP46Q8IYW2 2715 aa6.77□□□□□ -1.33
CLIP1-209ENST00000537178 A0A1B0GU33 70 aa6.77□□□□□ -1.33
CLIP1-209ENST00000537178 CASC10Q5T4H9 136 aa6.76□□□□□ -1.33
CLIP1-209ENST00000537178 IGLV7-46A0A075B6I9 117 aa6.74□□□□□ -1.33
CLIP1-209ENST00000537178 CR1P17927 2039 aa6.74□□□□□ -1.33
CLIP1-209ENST00000537178 A0A096LNT2 108 aa6.73□□□□□ -1.33
CLIP1-209ENST00000537178 FP248Q71RG6 208 aaPredicted RBP6.73□□□□□ -1.33
CLIP1-209ENST00000537178 KRTAP10-3P60369 221 aa6.71□□□□□ -1.34
CLIP1-209ENST00000537178 FLNCQ14315 2725 aa6.71□□□□□ -1.34
CLIP1-209ENST00000537178 HRES1P13985 223 aa6.71□□□□□ -1.34
CLIP1-209ENST00000537178 Q75L30 129 aa6.7□□□□□ -1.34
CLIP1-209ENST00000537178 SETXQ7Z333 2677 aaKnown RBP6.69□□□□□ -1.34
CLIP1-209ENST00000537178 FAM229BQ4G0N7 80 aa6.69□□□□□ -1.34
CLIP1-209ENST00000537178 CSAG1Q6PB30 78 aa6.67□□□□□ -1.34
CLIP1-209ENST00000537178 DMAC1Q96GE9 116 aa6.66□□□□□ -1.34
CLIP1-209ENST00000537178 LINC01558Q9Y6Z2 57 aa6.66□□□□□ -1.34
CLIP1-209ENST00000537178 A0A0A0MQY5 61 aa6.65□□□□□ -1.34
CLIP1-209ENST00000537178 M0R2T5 61 aa6.65□□□□□ -1.34
CLIP1-209ENST00000537178 NF1P21359 2839 aa6.64□□□□□ -1.35
CLIP1-209ENST00000537178 TNP2Q05952 138 aa6.64□□□□□ -1.35
CLIP1-209ENST00000537178 Q8N9P0 234 aaPredicted RBP6.63□□□□□ -1.35
CLIP1-209ENST00000537178 ZCCHC13Q8WW36 166 aaKnown RBP6.63□□□□□ -1.35
CLIP1-209ENST00000537178 CHD6Q8TD26 2715 aa6.61□□□□□ -1.35
CLIP1-209ENST00000537178 MMP24-AS1A0A0U1RRL7 71 aa6.61□□□□□ -1.35
CLIP1-209ENST00000537178 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-209ENST00000537178 TEX15Q9BXT5 2789 aa6.6□□□□□ -1.35
CLIP1-209ENST00000537178 S4R3F8 94 aa6.57□□□□□ -1.36
CLIP1-209ENST00000537178 ITPR3Q14573 2671 aa6.57□□□□□ -1.36
CLIP1-209ENST00000537178 FLNAP21333 2647 aaKnown RBP6.57□□□□□ -1.36
CLIP1-209ENST00000537178 UBR5O95071 2799 aaPredicted RBP6.56□□□□□ -1.36
CLIP1-209ENST00000537178 R4GN34 69 aa6.56□□□□□ -1.36
CLIP1-209ENST00000537178 PRAC1Q96KF2 57 aa6.55□□□□□ -1.36
CLIP1-209ENST00000537178 PLAC8Q9NZF1 115 aa6.54□□□□□ -1.36
CLIP1-209ENST00000537178 CENPEQ02224 2701 aa6.54□□□□□ -1.36
CLIP1-209ENST00000537178 SPRR1AP35321 89 aa6.54□□□□□ -1.36
CLIP1-209ENST00000537178 Q5W150 140 aa6.53□□□□□ -1.36
CLIP1-209ENST00000537178 DMBT1Q9UGM3 2413 aaPredicted RBP6.53□□□□□ -1.36
CLIP1-209ENST00000537178 IGSF10Q6WRI0 2623 aa6.53□□□□□ -1.36
CLIP1-209ENST00000537178 STAB2Q8WWQ8 2551 aa6.53□□□□□ -1.36
CLIP1-209ENST00000537178 KRTAP1-3Q8IUG1 177 aa6.52□□□□□ -1.37
CLIP1-209ENST00000537178 NBEAL1Q6ZS30 2694 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms