RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 H3BUT2 72 aa4.51□□□□□ -1.69
CD44-228ENST00000528455 UBE2AP49459 152 aa4.51□□□□□ -1.69
CD44-228ENST00000528455 RPL37AP61513 92 aaKnown RBP4.51□□□□□ -1.69
CD44-228ENST00000528455 LYRM7Q5U5X0 104 aa4.51□□□□□ -1.69
CD44-228ENST00000528455 MYCBP2O75592 4640 aa4.51□□□□□ -1.69
CD44-228ENST00000528455 DMBT1Q9UGM3 2413 aaPredicted RBP4.51□□□□□ -1.69
CD44-228ENST00000528455 FLG2Q5D862 2391 aaPredicted RBP4.5□□□□□ -1.69
CD44-228ENST00000528455 A0A1W2PPM0 123 aa4.5□□□□□ -1.69
CD44-228ENST00000528455 hADV29S1A0JD25 119 aa4.5□□□□□ -1.69
CD44-228ENST00000528455 FABP2P12104 132 aa4.5□□□□□ -1.69
CD44-228ENST00000528455 SMCR5Q8TEV8 140 aa4.5□□□□□ -1.69
CD44-228ENST00000528455 LCE1AQ5T7P2 110 aa4.49□□□□□ -1.69
CD44-228ENST00000528455 SPINK6Q6UWN8 80 aa4.49□□□□□ -1.69
CD44-228ENST00000528455 Q9BRP9 147 aa4.49□□□□□ -1.69
CD44-228ENST00000528455 H3BQ85 93 aa4.48□□□□□ -1.69
CD44-228ENST00000528455 TRACP01848 142 aa4.48□□□□□ -1.69
CD44-228ENST00000528455 KRTAP10-4P60372 401 aaPredicted RBP4.48□□□□□ -1.69
CD44-228ENST00000528455 PRLHP81277 87 aa4.48□□□□□ -1.69
CD44-228ENST00000528455 OCIAD2Q56VL3 154 aa4.48□□□□□ -1.69
CD44-228ENST00000528455 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.48□□□□□ -1.69
CD44-228ENST00000528455 NAA38Q9BRA0 125 aaKnown RBP4.48□□□□□ -1.69
CD44-228ENST00000528455 LST1O00453 97 aa4.47□□□□□ -1.69
CD44-228ENST00000528455 TCL1BO95988 128 aa4.47□□□□□ -1.69
CD44-228ENST00000528455 ATXN8Q156A1 80 aa4.47□□□□□ -1.69
CD44-228ENST00000528455 CLEC2BQ92478 149 aa4.47□□□□□ -1.69
CD44-228ENST00000528455 FAM218AQ96MZ4 157 aa4.47□□□□□ -1.69
CD44-228ENST00000528455 HIGD2AQ9BW72 106 aa4.47□□□□□ -1.69
CD44-228ENST00000528455 ERC2-IT1O76042 136 aa4.46□□□□□ -1.7
CD44-228ENST00000528455 PPDPFLQ8WWR9 84 aa4.46□□□□□ -1.7
CD44-228ENST00000528455 IGLV5-48A0A075B6I7 105 aa4.45□□□□□ -1.7
CD44-228ENST00000528455 KRTAP29-1A8MX34 341 aaPredicted RBP4.45□□□□□ -1.7
CD44-228ENST00000528455 TMEM256-PLSCR3K7ERE1 68 aa4.45□□□□□ -1.7
CD44-228ENST00000528455 DNAL4O96015 105 aa4.45□□□□□ -1.7
CD44-228ENST00000528455 ZNF706Q9Y5V0 76 aaPredicted RBP4.45□□□□□ -1.7
CD44-228ENST00000528455 IGKV2D-30A0A075B6S6 120 aa4.44□□□□□ -1.7
CD44-228ENST00000528455 TEX49A0A1B0GTD5 131 aa4.44□□□□□ -1.7
CD44-228ENST00000528455 SPRR1BP22528 89 aa4.44□□□□□ -1.7
CD44-228ENST00000528455 Q6ZQY7 126 aa4.44□□□□□ -1.7
CD44-228ENST00000528455 GTF2H5Q6ZYL4 71 aa4.44□□□□□ -1.7
CD44-228ENST00000528455 SPCS1Q9Y6A9 102 aa4.44□□□□□ -1.7
CD44-228ENST00000528455 H3BMG7 143 aa4.43□□□□□ -1.7
CD44-228ENST00000528455 K7EP34 96 aa4.43□□□□□ -1.7
CD44-228ENST00000528455 BAALC-AS2P0C853 105 aa4.43□□□□□ -1.7
CD44-228ENST00000528455 LINC01547P58512 204 aaPredicted RBP4.43□□□□□ -1.7
CD44-228ENST00000528455 LINC00483Q53H64 154 aa4.43□□□□□ -1.7
CD44-228ENST00000528455 Q8N377 158 aa4.43□□□□□ -1.7
CD44-228ENST00000528455 SPRR4Q96PI1 79 aa4.43□□□□□ -1.7
CD44-228ENST00000528455 ORMDL1Q9P0S3 153 aa4.43□□□□□ -1.7
CD44-228ENST00000528455 OXTP01178 125 aa4.42□□□□□ -1.7
CD44-228ENST00000528455 UBE2V1Q13404 147 aa4.42□□□□□ -1.7
CD44-228ENST00000528455 ST20-AS1Q8NBB2 130 aa4.42□□□□□ -1.7
CD44-228ENST00000528455 DEFB105AQ8NG35 78 aa4.42□□□□□ -1.7
CD44-228ENST00000528455 LINC01600Q96MT4 127 aa4.42□□□□□ -1.7
CD44-228ENST00000528455 PKHD1L1Q86WI1 4243 aa4.41□□□□□ -1.7
CD44-228ENST00000528455 C9JAW5 83 aa4.41□□□□□ -1.7
CD44-228ENST00000528455 F8W1H4 67 aa4.41□□□□□ -1.7
CD44-228ENST00000528455 FAM229BQ4G0N7 80 aa4.41□□□□□ -1.7
CD44-228ENST00000528455 GAGE2AQ6NT46 116 aa4.41□□□□□ -1.7
CD44-228ENST00000528455 LRP1Q07954 4544 aaKnown RBP4.41□□□□□ -1.7
CD44-228ENST00000528455 FAT3Q8TDW7 4589 aa4.4□□□□□ -1.7
CD44-228ENST00000528455 A0A1B0GV90 55 aa4.4□□□□□ -1.71
CD44-228ENST00000528455 H3BT86 120 aa4.4□□□□□ -1.71
CD44-228ENST00000528455 KRTAP1-4P0C5Y4 121 aa4.4□□□□□ -1.71
CD44-228ENST00000528455 NDUFV3P56181 108 aaKnown RBP4.4□□□□□ -1.71
CD44-228ENST00000528455 SMIM29Q86T20 159 aa4.4□□□□□ -1.71
CD44-228ENST00000528455 LAMTOR3Q9UHA4 124 aa4.4□□□□□ -1.71
CD44-228ENST00000528455 CRYGAP11844 174 aa4.39□□□□□ -1.71
CD44-228ENST00000528455 KRTAP5-3Q6L8H2 238 aa4.39□□□□□ -1.71
CD44-228ENST00000528455 SSBP3-AS1Q7Z2R9 100 aa4.39□□□□□ -1.71
CD44-228ENST00000528455 ANKRD29Q8N6D5 301 aa4.39□□□□□ -1.71
CD44-228ENST00000528455 IGLV8-61A0A075B6I0 122 aa4.37□□□□□ -1.71
CD44-228ENST00000528455 JMJD7-PLA2G4BH0Y9G9 81 aa4.37□□□□□ -1.71
CD44-228ENST00000528455 ANAPC11Q9NYG5 84 aa4.37□□□□□ -1.71
CD44-228ENST00000528455 PRO0461Q9UI25 63 aa4.37□□□□□ -1.71
CD44-228ENST00000528455 KRTAP10-8P60410 259 aa4.36□□□□□ -1.71
CD44-228ENST00000528455 RBM3P98179 157 aaKnown RBP4.36□□□□□ -1.71
CD44-228ENST00000528455 OBSCN-AS1Q96MR7 158 aa4.36□□□□□ -1.71
CD44-228ENST00000528455 A0A087X002 238 aa4.35□□□□□ -1.71
CD44-228ENST00000528455 F8WEM9 126 aa4.35□□□□□ -1.71
CD44-228ENST00000528455 SEC61BP60468 96 aaKnown RBP4.35□□□□□ -1.71
CD44-228ENST00000528455 Q6JHZ5 121 aa4.35□□□□□ -1.71
CD44-228ENST00000528455 C3orf22Q8N5N4 141 aa4.35□□□□□ -1.71
CD44-228ENST00000528455 HMCN2Q8NDA2 5059 aa4.34□□□□□ -1.71
CD44-228ENST00000528455 PDE6GP18545 87 aa4.34□□□□□ -1.71
CD44-228ENST00000528455 KRTAP13-2Q52LG2 175 aa4.34□□□□□ -1.71
CD44-228ENST00000528455 TYMSOSQ8TAI1 123 aa4.34□□□□□ -1.71
CD44-228ENST00000528455 KRTAP9-8Q9BYQ0 159 aa4.34□□□□□ -1.71
CD44-228ENST00000528455 IGLV9-49A0A0B4J1Y8 123 aa4.33□□□□□ -1.72
CD44-228ENST00000528455 Q8NBF4 154 aa4.33□□□□□ -1.72
CD44-228ENST00000528455 DSCR8Q96T75 97 aa4.33□□□□□ -1.72
CD44-228ENST00000528455 A0A1B0GW54 56 aa4.32□□□□□ -1.72
CD44-228ENST00000528455 CD164Q04900 197 aa4.32□□□□□ -1.72
CD44-228ENST00000528455 SPAG11AQ6PDA7 123 aa4.32□□□□□ -1.72
CD44-228ENST00000528455 TEN1Q86WV5 123 aa4.32□□□□□ -1.72
CD44-228ENST00000528455 MTURNQ8N3F0 131 aa4.32□□□□□ -1.72
CD44-228ENST00000528455 UBR4Q5T4S7 5183 aa4.31□□□□□ -1.72
CD44-228ENST00000528455 LOC110117498A0A087WWA1 95 aa4.31□□□□□ -1.72
CD44-228ENST00000528455 TRBV7-4A0A0J9YYF1 115 aa4.31□□□□□ -1.72
CD44-228ENST00000528455 MT1HL1P0DM35 61 aa4.31□□□□□ -1.72
CD44-228ENST00000528455 MOBPQ13875 183 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms