RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 VAMP3Q15836 100 aa5.73□□□□□ -1.49
CPSF1-203ENST00000527916 PCOTHQ58A44 107 aa5.72□□□□□ -1.49
CPSF1-203ENST00000527916 S100A6P06703 90 aa5.71□□□□□ -1.5
CPSF1-203ENST00000527916 LINC00575Q6W349 94 aa5.7□□□□□ -1.5
CPSF1-203ENST00000527916 FLGP20930 4061 aaPredicted RBP5.69□□□□□ -1.5
CPSF1-203ENST00000527916 C1orf195Q5TG92 126 aa5.69□□□□□ -1.5
CPSF1-203ENST00000527916 COX6B2Q6YFQ2 88 aa5.69□□□□□ -1.5
CPSF1-203ENST00000527916 hADV29S1A0JD25 119 aa5.68□□□□□ -1.5
CPSF1-203ENST00000527916 TCL1BO95988 128 aa5.67□□□□□ -1.5
CPSF1-203ENST00000527916 A0A0G2JQZ4 141 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 C9orf92A6NGG3 77 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 F8WEM9 126 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 DLEU1O43261 78 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 COX8AP10176 69 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 BVES-AS1Q5T3Y7 98 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 Q6JHZ5 121 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 Q6ZQY7 126 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 PPDPFLQ8WWR9 84 aa5.66□□□□□ -1.5
CPSF1-203ENST00000527916 SCGB1D1O95968 90 aa5.65□□□□□ -1.5
CPSF1-203ENST00000527916 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.65□□□□□ -1.5
CPSF1-203ENST00000527916 HIST1H4GQ99525 98 aa5.65□□□□□ -1.5
CPSF1-203ENST00000527916 OCIAD2Q56VL3 154 aa5.63□□□□□ -1.51
CPSF1-203ENST00000527916 SSPOA2VEC9 5147 aa5.62□□□□□ -1.51
CPSF1-203ENST00000527916 IGFL1Q6UW32 110 aa5.62□□□□□ -1.51
CPSF1-203ENST00000527916 CLEC2BQ92478 149 aa5.62□□□□□ -1.51
CPSF1-203ENST00000527916 TRBV7-7A0A0K0K1E9 115 aa5.61□□□□□ -1.51
CPSF1-203ENST00000527916 CFC1P0CG37 223 aa5.61□□□□□ -1.51
CPSF1-203ENST00000527916 RPL37P61927 97 aaKnown RBP5.61□□□□□ -1.51
CPSF1-203ENST00000527916 HIGD1BQ9P298 99 aa5.61□□□□□ -1.51
CPSF1-203ENST00000527916 TMA7Q9Y2S6 64 aaKnown RBP5.61□□□□□ -1.51
CPSF1-203ENST00000527916 USH2AO75445 5202 aa5.6□□□□□ -1.51
CPSF1-203ENST00000527916 C12orf57Q99622 126 aa5.6□□□□□ -1.51
CPSF1-203ENST00000527916 H0YGX0 51 aa5.59□□□□□ -1.51
CPSF1-203ENST00000527916 SNCGO76070 127 aa5.59□□□□□ -1.51
CPSF1-203ENST00000527916 C14orf144Q96I85 54 aa5.59□□□□□ -1.51
CPSF1-203ENST00000527916 SNHG12Q9BXW3 62 aa5.59□□□□□ -1.51
CPSF1-203ENST00000527916 A0A0B4J2C4 111 aa5.58□□□□□ -1.52
CPSF1-203ENST00000527916 FCGBPQ9Y6R7 5405 aaPredicted RBP5.58□□□□□ -1.52
CPSF1-203ENST00000527916 SPATA45Q537H7 98 aa5.57□□□□□ -1.52
CPSF1-203ENST00000527916 RAB37Q96AX2 223 aa5.57□□□□□ -1.52
CPSF1-203ENST00000527916 Q6Q795 121 aa5.56□□□□□ -1.52
CPSF1-203ENST00000527916 PAM16Q9Y3D7 125 aa5.56□□□□□ -1.52
CPSF1-203ENST00000527916 LOC105371267A0A1B0GV96 52 aa5.55□□□□□ -1.52
CPSF1-203ENST00000527916 A0A1B0GX51 115 aa5.55□□□□□ -1.52
CPSF1-203ENST00000527916 GHRHP01286 108 aa5.55□□□□□ -1.52
CPSF1-203ENST00000527916 C2orf91Q6ZV80 131 aa5.55□□□□□ -1.52
CPSF1-203ENST00000527916 VAMP8Q9BV40 100 aa5.55□□□□□ -1.52
CPSF1-203ENST00000527916 LST1O00453 97 aa5.54□□□□□ -1.52
CPSF1-203ENST00000527916 CEND1Q8N111 149 aa5.54□□□□□ -1.52
CPSF1-203ENST00000527916 TMEM238LA0A1B0GVL6 79 aa5.53□□□□□ -1.52
CPSF1-203ENST00000527916 A6NJY4 79 aa5.53□□□□□ -1.52
CPSF1-203ENST00000527916 H3BUT2 72 aa5.53□□□□□ -1.52
CPSF1-203ENST00000527916 NDUFV3P56181 108 aaKnown RBP5.53□□□□□ -1.52
CPSF1-203ENST00000527916 TEN1Q86WV5 123 aa5.53□□□□□ -1.52
CPSF1-203ENST00000527916 FAM218AQ96MZ4 157 aa5.53□□□□□ -1.52
CPSF1-203ENST00000527916 PRO1854Q9UHT4 67 aa5.53□□□□□ -1.52
CPSF1-203ENST00000527916 Q75L30 129 aa5.52□□□□□ -1.53
CPSF1-203ENST00000527916 SS18L2Q9UHA2 77 aa5.52□□□□□ -1.53
CPSF1-203ENST00000527916 OBSCN-AS1Q96MR7 158 aa5.5□□□□□ -1.53
CPSF1-203ENST00000527916 SYNE2Q8WXH0 6885 aaKnown RBP5.5□□□□□ -1.53
CPSF1-203ENST00000527916 H3BMG7 143 aa5.49□□□□□ -1.53
CPSF1-203ENST00000527916 ATP11AUNQ6ZP68 121 aa5.49□□□□□ -1.53
CPSF1-203ENST00000527916 H3BQ85 93 aa5.48□□□□□ -1.53
CPSF1-203ENST00000527916 FXYD2P54710 66 aa5.48□□□□□ -1.53
CPSF1-203ENST00000527916 TRIAP1O43715 76 aa5.47□□□□□ -1.53
CPSF1-203ENST00000527916 FABP2P12104 132 aa5.47□□□□□ -1.53
CPSF1-203ENST00000527916 MACF1Q9UPN3 7388 aaKnown RBP5.46□□□□□ -1.54
CPSF1-203ENST00000527916 A0A087WSZ3 146 aa5.46□□□□□ -1.54
CPSF1-203ENST00000527916 KRTAP19-1Q8IUB9 90 aa5.46□□□□□ -1.54
CPSF1-203ENST00000527916 Q96NJ1 140 aa5.46□□□□□ -1.54
CPSF1-203ENST00000527916 C20orf166-AS1Q96NR2 134 aa5.46□□□□□ -1.54
CPSF1-203ENST00000527916 KRTAP9-8Q9BYQ0 159 aa5.46□□□□□ -1.54
CPSF1-203ENST00000527916 HSD52Q0P140 79 aa5.45□□□□□ -1.54
CPSF1-203ENST00000527916 PYY3Q5JQD4 70 aa5.45□□□□□ -1.54
CPSF1-203ENST00000527916 A0A1W2PNM2 257 aa5.44□□□□□ -1.54
CPSF1-203ENST00000527916 A8MUU9 505 aa5.44□□□□□ -1.54
CPSF1-203ENST00000527916 ORMDL1Q9P0S3 153 aa5.44□□□□□ -1.54
CPSF1-203ENST00000527916 TRBV7-4A0A0J9YYF1 115 aa5.43□□□□□ -1.54
CPSF1-203ENST00000527916 TMEM256-PLSCR3K7ERE1 68 aa5.43□□□□□ -1.54
CPSF1-203ENST00000527916 DNAL4O96015 105 aa5.43□□□□□ -1.54
CPSF1-203ENST00000527916 COX6CP09669 75 aa5.43□□□□□ -1.54
CPSF1-203ENST00000527916 PSMB2P49721 201 aa5.42□□□□□ -1.54
CPSF1-203ENST00000527916 ANKRD29Q8N6D5 301 aa5.42□□□□□ -1.54
CPSF1-203ENST00000527916 LINC00846Q9NV44 126 aa5.41□□□□□ -1.54
CPSF1-203ENST00000527916 UBE2V1Q13404 147 aa5.4□□□□□ -1.54
CPSF1-203ENST00000527916 UQCR10Q9UDW1 63 aa5.4□□□□□ -1.54
CPSF1-203ENST00000527916 K7ERJ3 54 aa5.39□□□□□ -1.55
CPSF1-203ENST00000527916 LINC00313P59037 77 aa5.39□□□□□ -1.55
CPSF1-203ENST00000527916 TRACP01848 142 aa5.38□□□□□ -1.55
CPSF1-203ENST00000527916 IGKV4-1P06312 121 aa5.37□□□□□ -1.55
CPSF1-203ENST00000527916 DSCR10P59022 87 aa5.37□□□□□ -1.55
CPSF1-203ENST00000527916 LINC00472Q9H8W2 130 aa5.37□□□□□ -1.55
CPSF1-203ENST00000527916 LCE2BO14633 110 aa5.36□□□□□ -1.55
CPSF1-203ENST00000527916 CCKP06307 115 aa5.36□□□□□ -1.55
CPSF1-203ENST00000527916 SIGMAR1Q99720 223 aa5.36□□□□□ -1.55
CPSF1-203ENST00000527916 TRBV20-1A0A075B6N2 111 aa5.35□□□□□ -1.55
CPSF1-203ENST00000527916 KRTAP16-1A8MUX0 517 aa5.35□□□□□ -1.55
CPSF1-203ENST00000527916 MT2AP02795 61 aa5.34□□□□□ -1.55
CPSF1-203ENST00000527916 SCGB1C2P0DMR2 95 aa5.33□□□□□ -1.56
CPSF1-203ENST00000527916 RBM3P98179 157 aaKnown RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms