RNA–Protein interactions for RNA: ENST00000519489.1

CTNNA1-216, Transcript of catenin alpha 1, humanhuman

TSL 2

Gene CTNNA1, Length 358 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-216ENST00000519489 TEX49A0A1B0GTD5 131 aa2.66□□□□□ -1.98
CTNNA1-216ENST00000519489 ZNF22P17026 224 aaPredicted RBP2.66□□□□□ -1.98
CTNNA1-216ENST00000519489 KRTAP20-2Q3LI61 65 aa2.66□□□□□ -1.98
CTNNA1-216ENST00000519489 SFTA2Q6UW10 78 aa2.66□□□□□ -1.98
CTNNA1-216ENST00000519489 LINC00299Q6ZSB3 139 aa2.66□□□□□ -1.98
CTNNA1-216ENST00000519489 ERASQ7Z444 233 aa2.66□□□□□ -1.98
CTNNA1-216ENST00000519489 TOMM6Q96B49 74 aa2.66□□□□□ -1.98
CTNNA1-216ENST00000519489 TRBV10-2A0A0K0K1G8 114 aa2.65□□□□□ -1.99
CTNNA1-216ENST00000519489 S100A8P05109 93 aa2.65□□□□□ -1.99
CTNNA1-216ENST00000519489 G0S2P27469 103 aa2.65□□□□□ -1.99
CTNNA1-216ENST00000519489 IFITM3Q01628 133 aa2.65□□□□□ -1.99
CTNNA1-216ENST00000519489 PET117Q6UWS5 81 aa2.65□□□□□ -1.99
CTNNA1-216ENST00000519489 H1FX-AS1Q4G0G2 97 aa2.64□□□□□ -1.99
CTNNA1-216ENST00000519489 SMIM7Q9BQ49 75 aa2.64□□□□□ -1.99
CTNNA1-216ENST00000519489 DHRS4-AS1Q9P1J3 65 aa2.64□□□□□ -1.99
CTNNA1-216ENST00000519489 KANTRA0A1W2PQU2 76 aa2.63□□□□□ -1.99
CTNNA1-216ENST00000519489 SMIM27A0A1W2PRY6 76 aa2.63□□□□□ -1.99
CTNNA1-216ENST00000519489 NDUFAF8A1L188 74 aa2.63□□□□□ -1.99
CTNNA1-216ENST00000519489 KRTAP5-8O75690 187 aa2.63□□□□□ -1.99
CTNNA1-216ENST00000519489 LCE3AQ5TA76 89 aa2.63□□□□□ -1.99
CTNNA1-216ENST00000519489 NXT2Q9NPJ8 142 aaKnown RBP2.63□□□□□ -1.99
CTNNA1-216ENST00000519489 LAMTOR2Q9Y2Q5 125 aa2.63□□□□□ -1.99
CTNNA1-216ENST00000519489 IGLV5-48A0A075B6I7 105 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 A0A1B0GWB2 263 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 A0A1B0GXF2 115 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 TMEM250H0YL14 139 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 K7EMI3 77 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 IGLC3P0DOY3 106 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 TMEM170BQ5T4T1 132 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 LCE3EQ5T5B0 92 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 SPANXB1Q9NS25 103 aaPredicted RBP2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 PRO2289Q9P1D8 64 aa2.62□□□□□ -1.99
CTNNA1-216ENST00000519489 SMLR1H3BR10 107 aa2.61□□□□□ -1.99
CTNNA1-216ENST00000519489 LST1O00453 97 aa2.61□□□□□ -1.99
CTNNA1-216ENST00000519489 FA2HQ7L5A8 372 aa2.61□□□□□ -1.99
CTNNA1-216ENST00000519489 KRTAP19-3Q7Z4W3 81 aa2.61□□□□□ -1.99
CTNNA1-216ENST00000519489 S100ZQ8WXG8 99 aa2.6□□□□□ -1.99
CTNNA1-216ENST00000519489 A4D1N5 150 aa2.59□□□□□ -1.99
CTNNA1-216ENST00000519489 COLCA2A8K830 154 aa2.59□□□□□ -1.99
CTNNA1-216ENST00000519489 SNRPEP62304 92 aaKnown RBP2.59□□□□□ -1.99
CTNNA1-216ENST00000519489 KLKP1Q107X0 134 aa2.59□□□□□ -1.99
CTNNA1-216ENST00000519489 MIEN1Q9BRT3 115 aa2.59□□□□□ -1.99
CTNNA1-216ENST00000519489 MAP1LC3CQ9BXW4 147 aa2.59□□□□□ -1.99
CTNNA1-216ENST00000519489 CYSTM1Q9H1C7 97 aa2.59□□□□□ -1.99
CTNNA1-216ENST00000519489 C11orf86A6NJI1 115 aa2.58□□□□□ -2
CTNNA1-216ENST00000519489 LINC00587B1AMM8 73 aa2.58□□□□□ -2
CTNNA1-216ENST00000519489 COX7BP24311 80 aa2.58□□□□□ -2
CTNNA1-216ENST00000519489 ELOF1P60002 83 aaKnown RBP2.58□□□□□ -2
CTNNA1-216ENST00000519489 UBE2V1Q13404 147 aa2.58□□□□□ -2
CTNNA1-216ENST00000519489 ADIRFQ15847 76 aa2.58□□□□□ -2
CTNNA1-216ENST00000519489 SOSTDC1Q6X4U4 206 aa2.58□□□□□ -2
CTNNA1-216ENST00000519489 COMMD7Q86VX2 200 aa2.58□□□□□ -2
CTNNA1-216ENST00000519489 F8WEM9 126 aa2.57□□□□□ -2
CTNNA1-216ENST00000519489 C5orf47Q569G3 176 aa2.57□□□□□ -2
CTNNA1-216ENST00000519489 OR13C6PQ8NH95 151 aa2.57□□□□□ -2
CTNNA1-216ENST00000519489 CBY1Q9Y3M2 126 aa2.57□□□□□ -2
CTNNA1-216ENST00000519489 SYNE1Q8NF91 8797 aaKnown RBP2.57□□□□□ -2
CTNNA1-216ENST00000519489 LINC00313P59037 77 aa2.56□□□□□ -2
CTNNA1-216ENST00000519489 NPC2P61916 151 aa2.56□□□□□ -2
CTNNA1-216ENST00000519489 HERV-K104P63124 156 aa2.56□□□□□ -2
CTNNA1-216ENST00000519489 RPS10P5Q9NQ39 176 aa2.56□□□□□ -2
CTNNA1-216ENST00000519489 LINC01549A6NIU2 74 aa2.55□□□□□ -2
CTNNA1-216ENST00000519489 NDUFC2O95298 119 aa2.55□□□□□ -2
CTNNA1-216ENST00000519489 RHEBQ15382 184 aa2.55□□□□□ -2
CTNNA1-216ENST00000519489 KRTAP5-2Q701N4 177 aa2.55□□□□□ -2
CTNNA1-216ENST00000519489 ATP5L2Q7Z4Y8 100 aa2.55□□□□□ -2
CTNNA1-216ENST00000519489 MYMXA0A1B0GTQ4 84 aa2.54□□□□□ -2
CTNNA1-216ENST00000519489 KRTAP19-7Q3SYF9 63 aa2.54□□□□□ -2
CTNNA1-216ENST00000519489 BAGE3Q86Y29 109 aa2.54□□□□□ -2
CTNNA1-216ENST00000519489 CLEC2BQ92478 149 aa2.54□□□□□ -2
CTNNA1-216ENST00000519489 TMEM223A0PJW6 202 aa2.53□□□□□ -2
CTNNA1-216ENST00000519489 HBDP02042 147 aa2.53□□□□□ -2
CTNNA1-216ENST00000519489 MT1EP04732 61 aa2.53□□□□□ -2
CTNNA1-216ENST00000519489 SRP19P09132 144 aaKnown RBP2.52□□□□□ -2.01
CTNNA1-216ENST00000519489 ADAMTSL4-AS1Q5T5F5 129 aa2.52□□□□□ -2.01
CTNNA1-216ENST00000519489 Q6JHZ5 121 aa2.51□□□□□ -2.01
CTNNA1-216ENST00000519489 LCA10Q71F78 164 aa2.51□□□□□ -2.01
CTNNA1-216ENST00000519489 SIGMAR1Q99720 223 aa2.51□□□□□ -2.01
CTNNA1-216ENST00000519489 A0A0J9YXY3 114 aa2.5□□□□□ -2.01
CTNNA1-216ENST00000519489 TSPEAR-AS2P59090 65 aa2.5□□□□□ -2.01
CTNNA1-216ENST00000519489 SLC7A5P1Q8MH63 180 aa2.5□□□□□ -2.01
CTNNA1-216ENST00000519489 LINC00518Q8N0U6 118 aa2.5□□□□□ -2.01
CTNNA1-216ENST00000519489 SMCO4Q9NRQ5 59 aa2.5□□□□□ -2.01
CTNNA1-216ENST00000519489 SS18L2Q9UHA2 77 aa2.5□□□□□ -2.01
CTNNA1-216ENST00000519489 NAT8Q9UHE5 227 aa2.5□□□□□ -2.01
CTNNA1-216ENST00000519489 ZNF815PA8K554 130 aa2.49□□□□□ -2.01
CTNNA1-216ENST00000519489 A0A096LNJ9 63 aa2.48□□□□□ -2.01
CTNNA1-216ENST00000519489 TRAV13-2A0A0B4J235 113 aa2.48□□□□□ -2.01
CTNNA1-216ENST00000519489 LINC01546A6NGU7 62 aa2.48□□□□□ -2.01
CTNNA1-216ENST00000519489 A8MU10 97 aa2.48□□□□□ -2.01
CTNNA1-216ENST00000519489 NMUP48645 174 aa2.47□□□□□ -2.01
CTNNA1-216ENST00000519489 OCIAD2Q56VL3 154 aa2.47□□□□□ -2.01
CTNNA1-216ENST00000519489 IFITM2Q01629 132 aa2.46□□□□□ -2.02
CTNNA1-216ENST00000519489 PMCHL1Q16048 86 aa2.46□□□□□ -2.02
CTNNA1-216ENST00000519489 SPANXDQ9BXN6 97 aa2.46□□□□□ -2.02
CTNNA1-216ENST00000519489 NHP2Q9NX24 153 aaKnown RBP2.46□□□□□ -2.02
CTNNA1-216ENST00000519489 TRBV7-6A0A0J9YX20 115 aa2.45□□□□□ -2.02
CTNNA1-216ENST00000519489 H3BUT2 72 aa2.45□□□□□ -2.02
CTNNA1-216ENST00000519489 KRTAP5-5Q701N2 237 aaPredicted RBP2.45□□□□□ -2.02
CTNNA1-216ENST00000519489 MT1MQ8N339 61 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms